B number Gene name mRNA intensity mRNA present # of tryptic peptides predicted Protein detected - total list # of tryptic peptides detected (total list) Proteins detected - membrane sample # of tryptic peptides detected (membrane sample) Membrane protein assignment Gene description Functional category b0002 thrA 13624 P 39 P 18 P(m) 2 "aspartokinase I, homoserine dehydrogenase I" Metabolism of small molecules b0003 thrB 6781 P 9 P 3 0 homoserine kinase Metabolism of small molecules b0004 thrC 15039 P 18 P 10 0 threonine synthase Metabolism of small molecules b0008 talB 20561 P 20 P 13 0 transaldolase B Metabolism of small molecules b0014 dnaK 13283 P 32 P 23 0 chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins Cell processes b0015 dnaJ 4492 P 13 P 4 P(m) 1 chaperone with DnaK; heat shock protein Cell processes b0029 lytB 1331 P 16 P 2 0 control of stringent response; involved in penicillin tolerance Global functions b0032 carA 9312 P 14 P 8 0 "carbamoyl-phosphate synthetase, glutamine (small) subunit" Metabolism of small molecules b0033 carB 7656 P 48 P 17 0 carbamoyl-phosphate synthase large subunit Metabolism of small molecules b0048 folA 1588 P 7 P 1 0 dihydrofolate reductase type I; trimethoprim resistance Metabolism of small molecules b0053 surA 3825 P 19 P 4 P(m) 1 GenProt "peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins (1st module)" Cell processes b0054 imp 2737 P 42 P 5 P(m) 5 GenProt organic solvent tolerance Cell processes b0071 leuD 4770 P 10 P 9 0 isopropylmalate isomerase subunit Metabolism of small molecules b0072 leuC 10437 P 18 P 9 0 3-isopropylmalate isomerase (dehydratase) subunit Metabolism of small molecules b0090 murG 1052 P 17 P 1 P(m) 1 GenProt-PHD UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Structural elements b0094 ftsA 4248 P 18 0 0 GenProt "ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes" Cell processes b0095 ftsZ 9268 P 22 P 6 P(m) 2 cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase Cell processes b0103 yacE 884 P 7 0 0 putative DNA repair protein Miscellaneous b0104 guaC 3117 P 13 P 3 0 GMP reductase Metabolism of small molecules b0109 nadC 273 P 15 0 0 quinolinate phosphoribosyltransferase Metabolism of small molecules b0113 pdhR 311 P 8 0 0 transcriptional regulator for pyruvate dehydrogenase complex Metabolism of small molecules b0114 aceE 15349 P 44 P 24 P(m) 1 pyruvate dehydrogenase (decarboxylase component) Metabolism of small molecules b0115 aceF 8150 P 34 P 13 0 pyruvate dehydrogenase (dihydrolipoyltransacetylase component) Metabolism of small molecules b0116 lpdA 21822 P 17 P 15 P(m) 4 lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex Metabolism of small molecules b0118 acnB 4087 P 41 P 22 0 aconitate hydrase B Metabolism of small molecules b0121 speE 11091 P 8 P 2 0 spermidine synthase = putrescine aminopropyltransferase Metabolism of small molecules b0124 gcd 408 P 32 P 1 P(m) 1 GenProt-PHD glucose dehydrogenase Metabolism of small molecules b0125 hpt 2328 P 8 0 0 hypoxanthine phosphoribosyltransferase Metabolism of small molecules b0127 yadG 952 P 16 0 0 putative ATP-binding component of a transport system Cell processes b0133 panC 1978 P 15 P 5 0 pantothenate synthetase Metabolism of small molecules b0134 panB 5716 P 6 P 3 0 3-methyl-2-oxobutanoate hydroxymethyltransferase Metabolism of small molecules b0145 dksA 5687 P 5 0 0 dnaK suppressor protein Macromolecule metabolism b0150 fhuA 1105 P 38 P 3 P(m) 3 MP-GenProt "outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80" Structural elements b0156 yadR 1779 P 4 P 2 0 "orf, hypothetical protein" Open reading frames b0159 pfs 1457 P 8 P 1 0 PHD "orf, hypothetical protein" Metabolism of small molecules b0161 htrA 1016 P 17 P 4 P(m) 1 periplasmic serine protease Do; heat shock protein HtrA Macromolecule metabolism b0163 yaeH 1127 P 7 P 5 0 putative structural protein Miscellaneous b0166 dapD 4162 P 13 P 9 0 "2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase" Metabolism of small molecules b0168 map 3407 P 16 P 2 0 methionine aminopeptidase Macromolecule metabolism b0169 rpsB 22176 P 11 P 10 0 30S ribosomal subunit protein S2 Structural elements b0170 tsf 9865 P 18 P 13 0 protein chain elongation factor EF-Ts Macromolecule metabolism b0171 pyrH 8142 P 11 0 0 uridylate kinase Metabolism of small molecules b0172 frr 3673 P 9 P 3 0 ribosome releasing factor Macromolecule metabolism b0177 yaeT 4380 P 40 P 12 P(m) 12 GenProt "orf, hypothetical protein" Open reading frames b0180 fabZ 7246 P 6 0 0 (3R)-hydroxymyristol acyl carrier protein dehydratase Metabolism of small molecules b0185 accA 1969 P 18 P 6 0 "acetylCoA carboxylase, carboxytransferase component, alpha subunit" Metabolism of small molecules b0194 proS 1361 P 29 P 11 0 proline tRNA synthetase Macromolecule metabolism b0197 yaeC 16241 P 13 P 7 P(m) 7 putative lipoprotein Miscellaneous b0200 yaeD 1976 P 9 0 0 putative phosphatase Miscellaneous b0220 ykfE 3358 P 8 P 1 0 "orf, hypothetical protein" Open reading frames b0222 gmhA 3000 P 10 P 4 0 phosphoheptose isomerase Structural elements b0237 pepD 1500 P 19 P 8 0 aminoacyl-histidine dipeptidase (peptidase D) Macromolecule metabolism b0243 proA 794 P 20 P 4 0 gamma-glutamylphosphate reductase Metabolism of small molecules b0325 yahK 2065 P 16 P 5 0 putative oxidoreductase Miscellaneous b0381 ddlA 465 P 15 P 1 0 D-alanine-D-alanine ligase A Structural elements b0386 proC 1126 P 8 0 0 pyrroline-5-carboxylate reductase Metabolism of small molecules b0410 yajD 1429 P 4 0 0 "orf, hypothetical protein" Open reading frames b0411 tsx 2270 P 10 P 1 P(m) 1 GenProt nucleoside channel; receptor of phage T6 and colicin K Cell processes b0415 ribH 3781 P 5 P 2 0 "riboflavin synthase, beta chain" Metabolism of small molecules b0416 nusB 3916 P 8 P 1 0 transcription termination; L factor Macromolecule metabolism b0419 yajO 1747 P 19 P 2 0 putative NAD(P)H-dependent xylose reductase Open reading frames b0421 ispA 2792 P 12 0 0 geranyltranstransferase (farnesyldiphosphate synthase) Metabolism of small molecules b0424 thiJ 512 P 7 P 1 0 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis Metabolism of small molecules b0426 yajQ 3822 P 10 P 3 0 "orf, hypothetical protein" Open reading frames b0434 yajG 3525 P 7 P 4 P(m) 4 putative polymerase/proteinase Miscellaneous b0436 tig 7545 P 24 P 17 0 trigger factor; a molecular chaperone involved in cell division Cell processes b0437 clpP 4300 P 7 0 0 "ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5" Macromolecule metabolism b0438 clpX 2012 P 22 P 8 0 "ATP-dependent specificity component of clpP serine protease, chaperone" Macromolecule metabolism b0439 lon 3719 P 37 P 8 0 "DNA-binding, ATP-dependent protease La; heat shock K-protein" Global functions b0441 ybaU 1170 P 33 P 7 P(m) 7 putative protease maturation protein Open reading frames b0450 glnK 98 A 7 P 2 0 nitrogen regulatory protein P-II 2 Metabolism of small molecules b0463 acrA 5723 P 21 P 5 P(m) 5 GenProt acridine efflux pump Cell processes b0469 apt 3354 P 8 P 4 0 adenine phosphoribosyltransferase Metabolism of small molecules b0473 htpG 970 P 37 P 14 0 "chaperone Hsp90, heat shock protein C 62.5" Cell processes b0474 adk 7814 P 13 P 4 0 adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity Metabolism of small molecules b0480 ushA 1930 P 21 P 4 0 UDP-sugar hydrolase (5'-nucleotidase) Metabolism of small molecules b0490 ybbL 442 P 12 0 0 putative ATP-binding component of a transport system Cell processes b0492 ybbN 2692 P 12 P 4 0 putative thioredoxin-like protein Miscellaneous b0523 purE 3543 P 5 0 0 PHD "phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit" Metabolism of small molecules b0525 ppiB 8209 P 7 P 1 0 peptidyl-prolyl cis-trans isomerase B (rotamase B) Macromolecule metabolism b0565 ompT 47106 P 17 P 6 P(m) 6 MP-GenProt "outer membrane protein 3b (a), protease VII" Structural elements b0578 nfnB 2638 P 11 P 4 0 oxygen-insensitive NAD(P)H nitroreductase Cell processes b0596 entA 371 P 11 0 0 "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis" Metabolism of small molecules b0605 ahpC 38698 P 9 P 9 0 "alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides" Cell processes b0606 ahpF 3105 P 24 P 6 0 "alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides" Cell processes b0607 ybdQ 1709 P 6 P 1 0 "orf, hypothetical protein" Open reading frames b0623 cspE 6086 P 5 P 4 P(m) 1 cold shock protein Miscellaneous b0632 dacA 2227 P 22 P 5 P(m) 5 GenProt "D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5" Cell processes b0633 rlpA 1907 P 10 P 3 P(m) 3 GenProt a minor lipoprotein Macromolecule metabolism b0655 gltI 5452 P 14 P 5 0 glutamate/aspartate transport system periplasmic binding transport protein Cell processes b0660 ybeZ 3091 P 18 P 5 0 putative ATP-binding protein in pho regulon Cell processes b0674 asnB 736 P 30 P 5 0 asparagine synthetase B Metabolism of small molecules b0679 nagE 892 P 17 P 5 P(m) 5 GenProt-PHD "PTS system, N-acetylglucosamine-specific enzyme IIABC" Cell processes b0680 glnS 1254 P 31 P 6 0 glutamine tRNA synthetase Macromolecule metabolism b0683 fur 4618 P 8 P 4 0 negative regulator Global functions b0684 fldA 6895 P 7 P 2 0 flavodoxin 1 Metabolism of small molecules b0686 ybfF 386 P 13 P 1 0 "orf, hypothetical protein" Open reading frames b0688 pgm 1043 P 24 P 6 0 phosphoglucomutase Metabolism of small molecules b0710 ybgI 3721 P 9 P 4 0 "orf, hypothetical protein" Open reading frames b0720 gltA 11527 P 17 P 12 P(m) 2 PHD citrate synthase Metabolism of small molecules b0723 sdhA 18927 P 29 P 12 P(m) 11 "succinate dehydrogenase, flavoprotein subunit" Metabolism of small molecules b0724 sdhB 5467 P 15 P 11 P(m) 11 "succinate dehydrogenase, iron sulfur protein" Metabolism of small molecules b0727 sucB 20532 P 15 P 5 0 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) Metabolism of small molecules b0729 sucD 7268 P 15 P 5 0 "succinyl-CoA synthetase, alpha subunit" Metabolism of small molecules b0740 tolB 6246 P 15 P 5 0 periplasmic protein involved in the tonb-independent uptake of group A colicins Extrachromosomal b0741 pal 13638 P 7 P 5 P(m) 5 GenProt peptidoglycan-associated lipoprotein Macromolecule metabolism b0742 ybgF 6035 P 8 P 3 0 "orf, hypothetical protein" Open reading frames b0750 nadA 2364 P 9 0 0 "quinolinate synthetase, A protein" Metabolism of small molecules b0754 aroG 5196 P 17 P 5 0 "3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible)" Metabolism of small molecules b0755 gpmA 5169 P 13 P 13 0 phosphoglyceromutase 1 Metabolism of small molecules b0756 galM 4960 P 13 P 6 0 galactose-1-epimerase (mutarotase) Metabolism of small molecules b0759 galE 1742 P 15 P 2 0 UDP-galactose-4-epimerase Metabolism of small molecules b0763 modA 999 P 17 0 0 molybdate-binding periplasmic protein; permease Cell processes b0772 ybhC 2605 P 12 P 4 P(m) 4 putative pectinesterase Miscellaneous b0775 bioB 3252 P 16 0 0 "biotin synthesis, sulfur insertion?" Metabolism of small molecules b0778 bioD 1308 P 7 P 2 0 dethiobiotin synthetase Metabolism of small molecules b0782 moaB 3559 P 9 P 4 0 "molybdopterin biosynthesis, protein B" Metabolism of small molecules b0805 b0805 366 P 29 0 0 MP-GenProt putative outer membrane receptor for iron transport Miscellaneous b0809 glnQ 3281 P 6 P 2 P(m) 2 ATP-binding component of glutamine high-affinity transport system Cell processes b0811 glnH 16120 P 14 P 5 0 periplasmic glutamine-binding protein; permease Cell processes b0812 dps 22609 P 12 P 6 0 "global regulator, starvation conditions" Global functions b0814 ompX 6175 P 6 P 2 P(m) 2 MP-GenProt outer membrane protein X Structural elements b0819 ybiS 2262 P 12 P 1 0 "orf, hypothetical protein" Open reading frames b0826 moeB 193 A 9 0 0 PHD molybdopterin biosynthesis Metabolism of small molecules b0830 b0830 1054 P 21 P 3 0 putative transport protein Cell processes b0854 potF 2781 P 14 0 0 periplasmic putrescine-binding protein; permease protein Cell processes b0863 artI 4421 P 12 P 2 0 arginine 3rd transport system periplasmic binding protein Cell processes b0864 artP 4200 P 5 0 0 ATP-binding component of 3rd arginine transport system Cell processes b0865 ybjP 2647 P 7 P 4 P(m) 4 putative enzyme Miscellaneous b0878 b0878 514 P 21 0 0 MP-GenProt putative membrane protein Miscellaneous b0888 trxB 1462 P 12 P 4 0 thioredoxin reductase Metabolism of small molecules b0891 lolA 2667 P 12 P 3 0 periplasmic protein effects translocation of lipoproteins from inner membrane to outer Cell processes b0893 serS 643 P 22 P 9 0 serine tRNA synthetase; also charges selenocystein tRNA with serine Macromolecule metabolism b0902 pflA 875 P 14 0 0 pyruvate formate lyase activating enzyme 1 Metabolism of small molecules b0903 pflB 5044 P 38 P 15 P(m) 1 formate acetyltransferase 1 Metabolism of small molecules b0907 serC 5838 P 17 P 10 0 3-phosphoserine aminotransferase Metabolism of small molecules b0910 cmk 2547 P 10 P 3 0 cytidylate kinase Metabolism of small molecules b0911 rpsA 29325 P 23 P 20 P(m) 3 30S ribosomal subunit protein S1 Structural elements b0914 msbA 751 P 26 P 3 P(m) 3 GenProt-PHD ATP-binding transport protein; multicopy suppressor of htrB Cell processes b0927 ycbL 1614 P 8 P 1 0 "orf, hypothetical protein" Open reading frames b0928 aspC 8281 P 23 P 16 0 aspartate aminotransferase Metabolism of small molecules b0929 ompF 32813 P 16 P 6 P(m) 6 MP-GenProt outer membrane protein 1a (Ia;b;F) Structural elements b0945 pyrD 1955 P 20 P 2 P(m) 2 dihydro-orotate dehydrogenase Metabolism of small molecules b0948 ycbY 794 P 36 P 1 0 putative oxidoreductase Open reading frames b0957 ompA 36891 P 16 P 19 P(m) 19 MP-GenProt outer membrane protein 3a (II*;G;d) Structural elements b0963 mgsA 3808 P 6 0 0 methylglyoxal synthase Metabolism of small molecules b0965 b0965 730 P 8 P 2 0 "orf, hypothetical protein" Open reading frames b1002 agp 2197 P 15 P 6 P(m) 1 periplasmic glucose-1-phosphatase Metabolism of small molecules b1004 wrbA 6589 P 9 P 7 0 trp repressor binding protein; affects association of trp repressor and operator Metabolism of small molecules b1014 putA 358 P 57 P 2 0 "proline dehydrogenase, P5C dehydrogenase" Metabolism of small molecules b1018 ycdO 1237 P 21 0 0 "orf, hypothetical protein" Open reading frames b1048 mdoG 3791 P 25 P 7 0 periplasmic glucans biosynthesis protein Cell processes b1062 pyrC 4514 P 16 P 5 0 dihydro-orotase Metabolism of small molecules b1075 flgD 216 P 2 0 0 "flagellar biosynthesis, initiation of hook assembly" Structural elements b1076 flgE 63 A 9 0 0 "flagellar biosynthesis, hook protein" Structural elements b1077 flgF 175 P 9 0 0 "flagellar biosynthesis, cell-proximal portion of basal-body rod" Structural elements b1078 flgG 253 A 8 0 0 "flagellar biosynthesis, cell-distal portion of basal-body rod" Structural elements b1083 flgL 68 A 17 0 0 flagellar biosynthesis; hook-filament junction protein Structural elements b1084 rne 1642 P 43 P 5 P(m) 3 MP "RNase E, membrane attachment, mRNA turnover, maturation 5S RNA" Macromolecule metabolism b1088 yceD 23085 P 6 P 2 0 "orf, hypothetical protein" Open reading frames b1091 fabH 5633 P 13 P 4 0 PHD 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase Metabolism of small molecules b1092 fabD 8101 P 11 P 2 0 malonyl-CoA-[acyl-carrier-protein] transacylase Metabolism of small molecules b1093 fabG 24478 P 10 P 4 0 3-oxoacyl-[acyl-carrier-protein] reductase Metabolism of small molecules b1094 acpP 42769 P 3 P 3 0 acyl carrier protein Metabolism of small molecules b1095 fabF 645 A 14 P 3 0 3-oxoacyl-[acyl-carrier-protein] synthase II Metabolism of small molecules b1100 ycfH 598 P 15 0 0 "orf, hypothetical protein" Open reading frames b1107 ycfO 3089 P 14 P 1 0 "orf, hypothetical protein" Open reading frames b1108 ycfP 4100 P 11 P 3 0 "orf, hypothetical protein" Open reading frames b1123 potD 5107 P 14 P 2 0 spermidine/putrescine periplasmic transport protein Cell processes b1126 potA 1171 P 19 0 0 ATP-binding component of spermidine/putrescine transport Cell processes b1130 phoP 6704 P 11 P 8 0 transcriptional regulatory protein Global functions b1131 purB 2271 P 22 P 7 0 adenylosuccinate lyase Metabolism of small molecules b1174 minE 2930 P 6 P 2 0 "cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation" Cell processes b1175 minD 5617 P 14 P 5 0 MP-GenProt "cell division inhibitor, a membrane ATPase, activates minC" Cell processes b1189 dadA 1825 P 20 P 2 0 D-amino acid dehydrogenase subunit Metabolism of small molecules b1197 treA 1352 P 27 P 3 0 "trehalase, periplasmic" Cell processes b1198 ycgC 618 P 21 P 7 0 putative PTS system enzyme I Miscellaneous b1199 dhaK2 3006 P 10 P 2 0 putative dihydroxyacetone kinase (EC 2.7.1.2) Metabolism of small molecules b1203 ychF 1146 P 19 P 6 0 putative GTP-binding protein Miscellaneous b1207 prsA 2638 P 12 P 4 0 phosphoribosylpyrophosphate synthetase Metabolism of small molecules b1209 hemM 3419 P 16 P 2 P(m) 2 GenProt "an enzyme in main pathway of synthesis of 5-aminolevulinate, possibly glutamyl-tRNA dehydrogenase" Metabolism of small molecules b1215 kdsA 2855 P 15 P 4 0 2-dehydro-3-deoxyphosphooctulonate aldolase Structural elements b1225 narH 295 P 25 0 0 GenProt "nitrate reductase 1, beta subunit" Metabolism of small molecules b1236 galU 1036 P 13 P 4 0 glucose-1-phosphate uridylyltransferase Metabolism of small molecules b1237 hns 34541 P 7 P 4 0 "DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator" Macromolecule metabolism b1241 adhE 4865 P 41 P 24 P(m) 1 CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase Metabolism of small molecules b1243 oppA 7098 P 26 P 18 0 oligopeptide transport; periplasmic binding protein Cell processes b1246 oppD 1533 P 20 0 0 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system Cell processes b1251 yciI 2853 P 2 P 1 0 "orf, hypothetical protein" Open reading frames b1256 yciD 341 P 8 0 0 MP-GenProt putative outer membrane protein Miscellaneous b1258 yciF 943 P 8 P 1 0 putative structural proteins Open reading frames b1260 trpA 1889 P 14 P 9 0 "tryptophan synthase, alpha protein" Metabolism of small molecules b1261 trpB 7588 P 18 P 4 0 "tryptophan synthase, beta protein" Metabolism of small molecules b1263 trpD 3403 P 15 P 2 0 "anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase" Metabolism of small molecules b1267 yciO 2495 P 8 P 3 0 "orf, hypothetical protein" Open reading frames b1272 sohB 1147 P 18 P 1 0 PHD putative protease Miscellaneous b1281 pyrF 982 P 10 P 2 0 orotidine-5'-phosphate decarboxylase Metabolism of small molecules b1284 b1284 248 P 15 0 0 putative DEOR-type transcriptional regulator Miscellaneous b1288 fabI 5468 P 11 P 5 0 enoyl-[acyl-carrier-protein] reductase (NADH) Metabolism of small molecules b1323 tyrR 662 P 27 0 0 "transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport" Cell processes b1324 tpx 7051 P 7 P 9 0 thiol peroxidase Cell processes b1329 mppA 457 P 27 P 1 0 "periplasmic murein tripeptide transport protein, also negative regulator of multiple antibiotic resistance" Cell processes b1333 ydaA 38 A 16 0 0 "orf, hypothetical protein" Open reading frames b1381 ydbH 208 P 41 0 0 "orf, hypothetical protein" Open reading frames b1406 ydbC 486 P 12 0 0 putative dehydrogenase Open reading frames b1415 aldA 8892 P 23 P 19 P(m) 2 "aldehyde dehydrogenase, NAD-linked" Metabolism of small molecules b1424 ydcG 282 P 29 P 3 0 putative glycoprotein Miscellaneous b1430 tehB 648 P 12 P 4 0 tellurite resistance Cell processes b1440 b1440 598 P 22 P 5 0 putative transport protein Cell processes b1452 b1452 2465 P 15 P 6 0 putative receptor Miscellaneous b1466 narW 299 P 14 0 0 "cryptic nitrate reductase 2, delta subunit, assembly function" Metabolism of small molecules b1482 osmC 5905 P 6 P 6 0 osmotically inducible protein Cell processes b1494 pqqL 67 A 48 0 0 putative peptidase Miscellaneous b1498 b1498 654 P 22 0 0 putative sulfatase Open reading frames b1583 b1583 11538 P 6 P 1 P(m) 1 "orf, hypothetical protein" Open reading frames b1602 pntB 3267 P 13 P 6 P(m) 6 GenProt-PHD "pyridine nucleotide transhydrogenase, beta subunit" Metabolism of small molecules b1604 b1604 1185 P 19 P 10 0 "orf, hypothetical protein" Open reading frames b1614 ydgA 3778 P 26 P 4 P(m) 4 "orf, hypothetical protein" Open reading frames b1619 hdhA 2814 P 12 P 1 0 "NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids" Metabolism of small molecules b1623 add 867 P 11 0 0 adenosine deaminase Metabolism of small molecules b1631 b1631 467 P 9 0 0 "orf, hypothetical protein" Open reading frames b1636 pdxY 549 P 12 0 0 pyridoxal kinase 2 / pyridoxine kinase Metabolism of small molecules b1641 slyB 15928 P 4 P 2 P(m) 2 MP-GenProt putative outer membrane protein Open reading frames b1646 sodC 1595 P 10 0 0 superoxide dismutase precursor (Cu-Zn) Cell processes b1650 nemA 429 P 18 P 1 0 N-ethylmaleimide reductase Metabolism of small molecules b1652 rnt 849 P 9 0 0 "RNase T, degrades tRNA" Macromolecule metabolism b1654 ydhD 6502 P 5 P 3 0 "orf, hypothetical protein" Open reading frames b1656 sodB 12459 P 8 P 2 0 "superoxide dismutase, iron" Cell processes b1658 purR 1323 P 18 P 2 0 "transcriptional repressor for pur regulon, glyA, glnB, prsA, speA" Metabolism of small molecules b1662 ribE 628 P 11 P 3 0 "riboflavin synthase, alpha chain" Metabolism of small molecules b1664 b1664 925 P 14 P 4 0 possible enzyme Miscellaneous b1667 b1667 4312 P 5 P 1 0 "orf, hypothetical protein" Open reading frames b1676 pykF 3969 P 27 P 13 0 "pyruvate kinase I (formerly F), fructose stimulated" Metabolism of small molecules b1677 lpp 55069 P 3 P 3 P(m) 3 GenProt murein lipoprotein Structural elements b1682 ynhD 1745 P 14 0 0 putative ATP-binding component of a transport system Cell processes b1687 ydiJ 1795 P 47 P 5 P(m) 5 putative oxidase Miscellaneous b1693 aroD 909 P 15 P 1 0 3-dehydroquinate dehydratase Metabolism of small molecules b1703 ydiA 1279 P 12 0 0 PHD "orf, hypothetical protein" Open reading frames b1710 btuE 2419 P 10 P 6 0 vitamin B12 transport Cell processes b1714 pheS 4088 P 18 P 8 0 "phenylalanine tRNA synthetase, alpha-subunit" Macromolecule metabolism b1723 pfkB 4224 P 16 P 3 0 6-phosphofructokinase II; suppressor of pfkA Metabolism of small molecules b1739 osmE 2821 P 4 P 2 P(m) 2 activator of ntrL gene Global functions b1749 xthA 1584 P 16 P 2 0 exonuclease III Macromolecule metabolism b1757 b1757 612 P 20 0 0 putative thiosulfate sulfur transferase Metabolism of small molecules b1761 gdhA 2794 P 23 P 8 0 NADP-specific glutamate dehydrogenase Metabolism of small molecules b1764 selD 2441 P 15 P 4 0 "selenophosphate synthase, H(2)Se added to acrylyl-tRNA" Macromolecule metabolism b1765 ydjA 2812 P 9 P 1 0 "orf, hypothetical protein" Open reading frames b1766 sppA 667 P 26 P 1 P(m) 1 "protease IV, a signal peptide peptidase" Macromolecule metabolism b1767 ansA 1743 P 9 P 2 0 cytoplasmic L-asparaginase I Metabolism of small molecules b1779 gapA 41263 P 20 P 13 P(m) 2 glyceraldehyde-3-phosphate dehydrogenase A Metabolism of small molecules b1780 yeaD 1358 P 11 P 5 0 "orf, hypothetical protein" Open reading frames b1782 mipA 9156 P 10 P 3 P(m) 3 GenProt Scaffolding protein for murein-synthesising holoenzyme. Structural elements b1807 yeaZ 1064 P 8 0 0 "orf, hypothetical protein" Open reading frames b1817 manX 5528 P 15 P 1 P(m) 1 "PTS enzyme IIAB, mannose-specific" Cell processes b1823 cspC 30711 P 5 P 4 P(m) 1 cold shock protein Miscellaneous b1830 prc 1360 P 35 P 6 0 carboxy-terminal protease for penicillin-binding protein 3 Macromolecule metabolism b1832 b1832 4057 P 10 P 2 0 "orf, hypothetical protein" Open reading frames b1834 b1834 238 P 38 P 1 P(m) 1 "orf, hypothetical protein" Open reading frames b1850 eda 1831 P 9 P 2 0 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase Metabolism of small molecules b1857 yebL 1559 P 14 P 2 0 PHD putative adhesin Miscellaneous b1864 yebC 3190 P 6 P 3 0 "orf, hypothetical protein" Open reading frames b1870 yecO 997 P 15 P 2 0 "orf, hypothetical protein" Open reading frames b1875 yecM 1119 P 10 P 2 0 "orf, hypothetical protein" Open reading frames b1882 cheY 231 A 5 0 0 chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components Cell processes b1886 tar 196 A 27 0 0 GenProt-PHD "methyl-accepting chemotaxis protein II, aspartate sensor receptor" Cell processes b1888 cheA 148 A 29 0 0 sensory transducer kinase between chemo- signal receptors and CheB and CheY Cell processes b1889 motB 83 A 19 0 0 GenProt-PHD "enables flagellar motor rotation, linking torque machinery to cell wall" Cell processes b1901 araF 235 P 19 0 0 L-arabinose-binding periplasmic protein Cell processes b1919 yedO 1906 P 13 P 3 0 putative 1-aminocyclopropane-1-carboxylate deaminase Miscellaneous b1920 fliY 5516 P 18 P 6 0 putative periplasmic binding transport protein Cell processes b1922 fliA 94 A 15 0 0 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons Structural elements b1923 fliC 392 P 22 0 0 "flagellar biosynthesis; flagellin, filament structural protein" Structural elements b1924 fliD 103 A 19 0 0 flagellar biosynthesis; filament capping protein; enables filament assembly Structural elements b1928 yedD 2060 P 9 P 2 P(m) 2 "orf, hypothetical protein" Open reading frames b1939 fliG 213 A 15 0 0 "flagellar biosynthesis, component of motor switching and energizing, enabling rotation and determining its direction" Structural elements b1940 fliH 113 A 12 0 0 flagellar biosynthesis; export of flagellar proteins? Structural elements b1945 fliM 222 P 17 0 0 "flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction" Structural elements b1967 yedU 3393 P 10 P 3 0 "orf, hypothetical protein" Open reading frames b2000 flu 565 P 39 P 3 P(m) 3 MP "outer membrane fluffing protein, similar to adhesin" Structural elements b2019 hisG 5358 P 14 P 2 0 ATP phosphoribosyltransferase Metabolism of small molecules b2020 hisD 3584 P 12 P 5 0 L-histidinal:NAD+ oxidoreductase; L-histidinol:NAD+ oxidoreductase Metabolism of small molecules b2024 hisA 4310 P 13 P 1 0 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase Metabolism of small molecules b2025 hisF 3366 P 15 P 2 0 imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme Metabolism of small molecules b2026 hisI 1384 P 4 P 1 0 phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase Metabolism of small molecules b2027 wzzB 1679 P 14 P 1 P(m) 1 PHD regulator of length of O-antigen component of lipopolysaccharide chains Structural elements b2029 gnd 4998 P 24 P 19 0 "gluconate-6-phosphate dehydrogenase, decarboxylating" Metabolism of small molecules b2036 glf 1393 P 20 P 7 0 UDP-galactopyranose mutase Metabolism of small molecules b2038 rfbC 956 P 9 P 1 0 "dTDP-6-deoxy-D-glucose-3,5 epimerase" Metabolism of small molecules b2041 rfbB 2839 P 19 P 9 0 "dTDP-glucose 4,6 dehydratase" Metabolism of small molecules b2042 galF 5460 P 13 P 3 0 "homolog of Salmonella UTP--glucose-1-P uridyltransferase, probably a UDP-gal transferase" Metabolism of small molecules b2066 udk 654 P 13 0 0 uridine/cytidine kinase Metabolism of small molecules b2096 gatY 47588 P 13 P 7 P(m) 1 tagatose-bisphosphate aldolase 1 Metabolism of small molecules b2103 thiD 949 P 13 P 2 0 phosphomethylpyrimidine kinase Metabolism of small molecules b2113 mrp 2110 P 13 P 1 0 putative ATPase Miscellaneous b2114 metG 1194 P 34 P 11 0 methionine tRNA synthetase Macromolecule metabolism b2131 yehZ 974 P 15 P 2 0 putative ABC superfamily (peri_bind) transport protein (possibly glycine betaine choline transport for osmoprotection) Cell processes b2132 bglX 728 P 37 0 0 "beta-D-glucoside glucohydrolase, periplasmic" Metabolism of small molecules b2150 mglB 7569 P 20 P 12 0 galactose-binding transport protein; receptor for galactose taxis Cell processes b2155 cirA 1209 P 30 P 5 P(m) 5 MP-GenProt outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product Structural elements b2169 fruB 878 P 14 0 0 "PTS system, fructose-specific IIA/fpr component" Cell processes b2171 yeiP 1445 P 9 P 2 0 putative elongation factor Miscellaneous b2183 rsuA 1276 P 9 P 1 0 16S pseudouridylate 516 synthase Macromolecule metabolism b2209 eco 746 P 8 P 1 0 "ecotin, a serine protease inhibitor" Macromolecule metabolism b2215 ompC 39955 P 18 P 5 P(m) 5 MP-GenProt outer membrane protein 1b (Ib;c) Structural elements b2239 glpQ 5247 P 18 P 10 P(m) 1 "glycerophosphodiester phosphodiesterase, periplasmic" Metabolism of small molecules b2242 glpB 3240 P 14 P 1 0 MP-GenProt "sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit" Metabolism of small molecules b2243 glpC 1441 P 27 0 0 GenProt "sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit" Metabolism of small molecules b2262 menB 1392 P 10 0 0 dihydroxynaphtoic acid synthetase Metabolism of small molecules b2263 yfbB 331 P 7 0 0 putative enzyme Miscellaneous b2283 nuoG 8178 P 40 P 8 P(m) 5 NADH dehydrogenase I chain G Metabolism of small molecules b2285 nuoE 15463 P 7 P 1 0 NADH dehydrogenase I chain E Metabolism of small molecules b2287 nuoB 9713 P 10 P 2 P(m) 1 NADH dehydrogenase I chain B Metabolism of small molecules b2294 b2294 8848 P 10 P 3 0 "orf, hypothetical protein" Open reading frames b2296 ackA 5299 P 15 P 3 0 acetate kinase Metabolism of small molecules b2297 pta 1290 P 31 P 9 0 phosphotransacetylase Metabolism of small molecules b2299 b2299 639 P 7 0 0 putative regulator Open reading frames b2300 yfcE 2986 P 5 0 0 "orf, hypothetical protein" Open reading frames b2309 hisJ 6475 P 12 P 4 0 histidine-binding periplasmic protein of high-affinity histidine transport system Cell processes b2310 argT 3551 P 15 P 10 0 "lysine-, arginine-, ornithine-binding periplasmic protein" Cell processes b2316 accD 2828 P 16 P 3 0 PHD "acetylCoA carboxylase, carboxytransferase component, beta subunit" Metabolism of small molecules b2319 usg 1262 P 12 P 2 0 putative PTS system enzyme II A component Miscellaneous b2320 pdxB 792 P 21 P 5 0 erythronate-4-phosphate dehyrogenase Metabolism of small molecules b2323 fabB 7891 P 13 P 6 0 3-oxoacyl-[acyl-carrier-protein] synthase I Metabolism of small molecules b2329 aroC 2496 P 13 P 1 0 chorismate synthase Metabolism of small molecules b2330 yfcB 3474 P 15 P 2 0 putative adenine-specific methylase Open reading frames b2344 fadL 652 P 13 P 2 P(m) 2 GenProt transport of long-chain fatty acids; sensitivity to phage T2 Cell processes b2369 evgA 1039 P 11 0 0 putative positive transcription regulator (sensor EvgS) Miscellaneous b2400 gltX 1430 P 23 P 7 0 "glutamate tRNA synthetase, catalytic subunit" Macromolecule metabolism b2411 lig 920 P 32 0 0 DNA ligase Macromolecule metabolism b2414 cysK 26197 P 13 P 15 P(m) 2 "cysteine synthase A, O-acetylserine sulfhydrolase A" Metabolism of small molecules b2416 ptsI 20122 P 28 P 8 0 PEP-protein phosphotransferase system enzyme I Cell processes b2417 crr 8031 P 6 P 5 0 "PTS system, glucose-specific IIA component" Cell processes b2418 pdxK 672 P 10 0 0 pyridoxal/pyridoxine/pyridoxamine kinase Metabolism of small molecules b2426 ucpA 857 P 17 P 1 0 putative oxidoreductase Miscellaneous b2431 b2431 720 P 15 P 1 0 "orf, hypothetical protein" Open reading frames b2464 talA 7999 P 21 P 6 0 transaldolase A Metabolism of small molecules b2476 purC 6714 P 13 P 6 0 phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase Metabolism of small molecules b2477 nlpB 3434 P 17 P 4 P(m) 4 GenProt lipoprotein-34 Macromolecule metabolism b2478 dapA 8978 P 11 P 2 0 dihydrodipicolinate synthase Metabolism of small molecules b2480 bcp 5167 P 10 P 5 0 "thiol peroxidase, thioredoxin dependent" Cell processes b2494 b2494 1327 P 17 0 0 "orf, hypothetical protein" Open reading frames b2498 upp 6828 P 10 P 4 0 uracil phosphoribosyltransferase Metabolism of small molecules b2499 purM 3990 P 9 P 5 P(m) 1 phosphoribosylaminoimidazole synthetase = AIR synthetase Metabolism of small molecules b2508 guaB 5523 P 17 P 5 0 IMP dehydrogenase Metabolism of small molecules b2512 yfgL 1897 P 15 P 5 P(m) 5 putative serine/threonine protein kinase Macromolecule metabolism b2513 b2513 2958 P 10 P 1 P(m) 1 "orf, hypothetical protein" Open reading frames b2514 hisS 3338 P 23 P 9 0 histidine tRNA synthetase Macromolecule metabolism b2515 gcpE 1419 P 22 P 6 0 "orf, hypothetical protein" Open reading frames b2518 ndk 19329 P 6 P 10 0 nucleoside diphosphate kinase Metabolism of small molecules b2521 sseA 2053 P 13 P 6 0 PHD putative thiosulfate sulfurtransferase Miscellaneous b2523 pepB 3045 P 25 P 16 0 "aminopeptidase B, a cyteinylglycinase (2nd module)" Macromolecule metabolism b2527 yfhE 1758 P 9 P 1 0 "orf, hypothetical protein" Cell processes b2528 iscA 5460 P 6 P 3 0 putative regulator believed to be involved in Fe-S protein formation or repair Cell processes b2529 iscU 6702 P 7 P 5 0 putative FeS assembly protein Miscellaneous b2532 b2532 1221 P 8 P 2 0 putative ATP synthase beta subunit Open reading frames b2533 suhB 479 A 16 P 6 0 "enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action" Global functions b2551 glyA 10756 P 19 P 14 0 serine hydroxymethyltransferase Metabolism of small molecules b2553 glnB 882 P 7 P 1 0 regulatory protein P-II for glutamine synthetase Metabolism of small molecules b2567 rnc 1797 P 13 P 3 0 "RNase III, ds RNA" Macromolecule metabolism b2571 rseB 1302 P 11 P 1 0 regulates activity of sigma-E factor Global functions b2573 rpoE 3926 P 9 0 0 "RNA polymerase, sigma-E factor; heat shock and oxidative stress" Global functions b2579 yfiD 394 P 9 P 4 0 putative formate acetyltransferase Metabolism of small molecules b2582 trxC 641 P 8 P 1 0 putative thioredoxin-like protein Metabolism of small molecules b2592 clpB 1606 P 46 P 14 0 heat shock protein Macromolecule metabolism b2595 b2595 3791 P 16 P 2 P(m) 2 "orf, hypothetical protein" Macromolecule metabolism b2608 rimM 37205 P 9 P 1 0 16S rRNA processing protein Macromolecule metabolism b2614 grpE 2920 P 6 P 2 0 phage lambda replication; host DNA synthesis; heat shock protein; protein repair Extrachromosomal b2665 ygaU 3443 P 12 P 3 P(m) 3 "orf, hypothetical protein" Open reading frames b2679 proX 6568 P 11 P 7 0 high-affinity transport system for glycine betaine and proline Cell processes b2687 ygaG 3559 P 7 P 3 0 "orf, hypothetical protein" Miscellaneous b2697 alaS 6894 P 49 P 13 0 alanyl-tRNA synthetase Macromolecule metabolism b2699 recA 3341 P 15 P 6 P(m) 2 "DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease" Macromolecule metabolism b2779 eno 11093 P 19 P 15 P(m) 2 enolase Metabolism of small molecules b2780 pyrG 7990 P 27 P 7 0 CTP synthetase Metabolism of small molecules b2797 sdaB 247 P 14 0 0 PHD "L-serine dehydratase (deaminase), L-SD2" Metabolism of small molecules b2799 fucO 190 P 15 P 1 0 "L-1,2-propanediol oxidoreductase" Metabolism of small molecules b2821 ptr 868 P 40 P 1 0 protease III Macromolecule metabolism b2891 prfB 8676 P 17 P 4 0 peptide chain release factor RF-2 Macromolecule metabolism b2893 dsbC 1808 P 10 P 1 0 protein disulfide isomerase II Structural elements b2898 ygfZ 1971 P 16 P 6 0 "orf, hypothetical protein" Open reading frames b2905 gcvT 2003 P 13 0 0 aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system Metabolism of small molecules b2914 rpiA 2279 P 7 P 3 0 "ribosephosphate isomerase, constitutive" Metabolism of small molecules b2924 yggB 4032 P 11 P 4 P(m) 4 PHD Component of the MscS mechanosensitive channel Miscellaneous b2925 fba 5147 P 12 P 14 P(m) 1 "fructose-bisphosphate aldolase, class II" Metabolism of small molecules b2926 pgk 16984 P 18 P 19 0 phosphoglycerate kinase Metabolism of small molecules b2935 tktA 1912 P 20 P 9 0 transketolase 1 isozyme Metabolism of small molecules b2942 metK 2768 P 20 P 8 0 "methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes" Metabolism of small molecules b2947 gshB 1431 P 15 P 3 0 glutathione synthetase Metabolism of small molecules b2948 yqgE 1164 P 10 0 0 "orf, hypothetical protein" Open reading frames b2951 yggS 2563 P 12 P 1 0 "orf, hypothetical protein" Open reading frames b2957 ansB 164 A 15 0 0 periplasmic L-asparaginase II Metabolism of small molecules b2958 yggN 1229 P 12 0 0 "orf, hypothetical protein" Open reading frames b2996 hybA 227 P 20 0 0 hydrogenase-2 small subunit Metabolism of small molecules b3011 yqhD 1184 P 17 P 2 0 putative oxidoreductase Miscellaneous b3012 yqhE 1421 P 14 P 4 0 "2,5-diketo-D-gluconate reductase A" Metabolism of small molecules b3017 sufI 255 P 20 P 1 0 suppressor of ftsI Miscellaneous b3024 ygiW 2675 P 6 P 3 0 "orf, hypothetical protein" Open reading frames b3035 tolC 3776 P 22 P 10 P(m) 10 MP-GenProt outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes Cell processes b3041 ribB 1210 P 9 P 2 0 "3,4 dihydroxy-2-butanone-4-phosphate synthase" Metabolism of small molecules b3042 b3042 4471 P 10 P 1 0 "orf, hypothetical protein" Open reading frames b3051 b3051 222 A 25 0 0 MP-GenProt-PHD putative membrane protein Miscellaneous b3052 b3052 749 P 25 P 3 0 putative kinase Metabolism of small molecules b3064 ygjD 827 P 16 0 0 putative O-sialoglycoprotein endopeptidase Miscellaneous b3098 yqjD 11454 P 4 P 2 P(m) 1 "orf, hypothetical protein" Open reading frames b3147 yraM 1102 P 30 P 3 P(m) 3 putative glycosylase Miscellaneous b3150 yraP 1789 P 9 P 2 P(m) 2 putative periplasmic protein Miscellaneous b3152 yraR 350 P 10 0 0 "orf, hypothetical protein" Open reading frames b3156 yhbS 508 P 5 P 2 0 GenProt "orf, hypothetical protein" Cell processes b3164 pnp 5346 P 29 P 8 P(m) 1 polynucleotide phosphorylase; cytidylate kinase activity Macromolecule metabolism b3169 nusA 11021 P 24 P 7 0 transcription pausing; L factor Macromolecule metabolism b3172 argG 2077 P 24 P 6 0 argininosuccinate synthetase Metabolism of small molecules b3176 mrsA 2106 P 23 P 4 0 similar to phosphoglucomutases and phosphomannomutases Metabolism of small molecules b3178 hflB 3175 P 32 P 8 P(m) 8 MP-GenProt "degrades sigma32, integral membrane peptidase, cell division protein" Macromolecule metabolism b3181 greA 925 P 10 P 4 0 transcription elongation factor: cleaves 3' nucleotide of paused mRNA Macromolecule metabolism b3182 dacB 328 A 21 0 0 "D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4" Structural elements b3189 murA 1459 P 21 P 1 0 first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase Structural elements b3192 yrbC 3960 P 13 P 1 0 "orf, hypothetical protein" Cell processes b3195 yrbF 1343 P 10 0 0 putative ATP-binding component of a transport system Cell processes b3200 yhbN 2682 P 4 0 0 "orf, hypothetical protein" Open reading frames b3201 yhbG 2705 P 13 P 1 0 putative ATP-binding component of a transport system Cell processes b3209 yhbL 1071 P 9 P 1 0 sigma cross-reacting protein 27A (SCRP-27A) Miscellaneous b3228 sspB 1618 P 5 P 1 0 stringent starvation protein B Global functions b3229 sspA 4258 P 9 P 2 0 regulator of transcription; stringent starvation protein A Global functions b3234 degQ 685 P 20 P 2 0 serine endoprotease Macromolecule metabolism b3236 mdh 18040 P 13 P 25 0 malate dehydrogenase Metabolism of small molecules b3244 tldD 806 P 17 0 0 suppresses inhibitory activity of CsrA Miscellaneous b3248 yhdE 1447 P 9 P 1 0 "orf, hypothetical protein" Open reading frames b3251 mreB 3268 P 17 P 5 P(m) 2 "regulator of ftsI, penicillin binding protein 3, septation function" Cell processes b3253 yhdH 1362 P 13 P 3 0 putative dehydrogenase Miscellaneous b3255 accB 10847 P 6 0 0 "acetylCoA carboxylase, BCCP subunit; carrier of biotin" Metabolism of small molecules b3256 accC 2703 P 22 P 9 0 "acetyl CoA carboxylase, biotin carboxylase subunit" Metabolism of small molecules b3261 fis 4945 P 2 0 0 site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription Macromolecule metabolism b3279 yrdA 1766 P 14 P 2 0 PHD putative transferase Miscellaneous b3282 yrdC 895 P 9 P 2 0 "orf, hypothetical protein" Open reading frames b3288 fmt 1413 P 13 P 4 0 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase Macromolecule metabolism b3295 rpoA 33843 P 17 P 12 0 "RNA polymerase, alpha subunit" Miscellaneous b3301 rplO 45038 P 6 P 4 0 50S ribosomal subunit protein L15 Structural elements b3339 tufA 55718 P 22 P 36 P(m) 3 protein chain elongation factor EF-Tu (duplicate of tufB) Macromolecule metabolism b3340 fusA 56613 P 32 P 29 0 GTP-binding protein chain elongation factor EF-G Macromolecule metabolism b3347 fkpA 1544 P 13 P 6 0 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) Macromolecule metabolism b3349 slyD 5225 P 5 P 1 0 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) Macromolecule metabolism b3384 trpS 858 P 12 P 3 0 tryptophan tRNA synthetase Macromolecule metabolism b3385 gph 3910 P 7 0 0 phosphoglycolate phosphatase Metabolism of small molecules b3386 rpe 2239 P 8 P 2 0 D-ribulose-5-phosphate 3-epimerase Metabolism of small molecules b3390 aroK 5176 P 14 P 2 0 shikimate kinase I Metabolism of small molecules b3396 mrcA 516 P 45 P 2 P(m) 2 GenProt-PHD peptidoglycan synthetase; penicillin-binding protein 1A Structural elements b3397 yrfE 619 P 10 0 0 "orf, hypothetical protein" Open reading frames b3401 hslO 668 P 11 P 4 0 Hsp33. Redox regulated chaperone Cell processes b3403 pckA 7786 P 24 P 15 0 phosphoenolpyruvate carboxykinase Metabolism of small molecules b3405 ompR 1241 P 13 P 1 0 "response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis" Global functions b3414 yhgI 4562 P 6 P 3 0 "orf, hypothetical protein" Miscellaneous b3422 rtcR 149 A 27 0 0 Sigma54-dependent regulator of rtcBA expression Macromolecule metabolism b3426 glpD 7847 P 30 P 23 P(m) 12 sn-glycerol-3-phosphate dehydrogenase (aerobic) Metabolism of small molecules b3433 asd 7201 P 12 P 12 0 aspartate-semialdehyde dehydrogenase Metabolism of small molecules b3438 gntR 529 P 14 0 0 regulator of gluconate (gnt) operon Metabolism of small molecules b3453 ugpB 760 P 25 P 5 0 sn-glycerol 3-phosphate transport system; periplasmic binding protein Cell processes b3458 livK 5530 P 17 P 11 0 high-affinity leucine-specific transport system; periplasmic binding protein Cell processes b3460 livJ 26232 P 13 P 11 P(m) 1 high-affinity amino acid transport system; periplasmic binding protein Cell processes b3472 b3472 2715 P 10 0 0 "orf, hypothetical protein" Open reading frames b3476 nikA 43 A 25 0 0 periplasmic binding protein for nickel Cell processes b3495 uspA 21127 P 4 0 0 universal stress protein; broad regulatory function? Cell processes b3500 gor 2280 P 17 P 3 0 glutathione oxidoreductase Metabolism of small molecules b3506 slp 1442 P 9 P 5 P(m) 5 MP-GenProt outer membrane protein induced after carbon starvation Structural elements b3509 hdeB 3775 P 7 P 1 0 "orf, hypothetical protein" Open reading frames b3510 hdeA 21552 P 2 P 2 0 "orf, hypothetical protein" Open reading frames b3513 yhiU 332 A 21 0 0 MP-GenProt putative membrane protein Miscellaneous b3524 yhjG 245 A 29 P 1 P(m) 1 "orf, hypothetical protein" Open reading frames b3526 kdgK 571 A 11 P 2 0 ketodeoxygluconokinase Metabolism of small molecules b3544 dppA 13089 P 24 P 15 P(m) 2 dipeptide transport protein Cell processes b3553 yiaE 1432 P 13 P 3 0 putative dehydrogenase Miscellaneous b3554 yiaF 1741 P 10 P 2 P(m) 2 "orf, hypothetical protein" Open reading frames b3559 glyS 2239 P 36 P 18 0 "glycine tRNA synthetase, beta subunit" Macromolecule metabolism b3591 selA 1887 P 29 0 0 selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase Macromolecule metabolism b3599 mtlA 913 P 20 P 2 P(m) 2 GenProt-PHD "PTS system, mannitol-specific enzyme IIABC components" Cell processes b3605 lldD 782 A 21 0 0 GenProt L-lactate dehydrogenase Metabolism of small molecules b3612 yibO 1790 P 19 P 4 0 "putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase" Miscellaneous b3617 kbl 1216 P 15 P 1 0 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) Metabolism of small molecules b3619 rfaD 4177 P 18 P 12 0 ADP-L-glycero-D-mannoheptose-6-epimerase Structural elements b3639 dfp 3195 P 17 0 0 flavoprotein affecting synthesis of DNA and pantothenate metabolism Macromolecule metabolism b3640 dut 1867 P 4 P 1 0 deoxyuridinetriphosphatase Metabolism of small molecules b3649 rpoZ 4820 P 5 P 3 0 "RNA polymerase, omega subunit" Miscellaneous b3661 nlpA 1002 P 11 P 3 P(m) 1 GenProt lipoprotein-28 Macromolecule metabolism b3697 yidA 509 P 12 P 1 0 "orf, hypothetical protein" Open reading frames b3699 gyrB 983 P 40 P 6 0 "DNA gyrase subunit B, type II topoisomerase, ATPase activity" Macromolecule metabolism b3708 tnaA 1915 P 22 P 8 0 tryptophanase Metabolism of small molecules b3728 pstS 2111 P 22 0 0 high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein Cell processes b3730 glmU 3616 P 19 P 2 0 N-acetyl glucosamine-1-phosphate uridyltransferase Metabolism of small molecules b3731 atpC 4613 P 3 0 0 MP-GenProt "membrane-bound ATP synthase, F1 sector, epsilon-subunit" Cell processes b3732 atpD 5523 P 23 P 11 P(m) 11 MP-GenProt "membrane-bound ATP synthase, F1 sector, beta-subunit" Cell processes b3733 atpG 11853 P 17 P 7 P(m) 7 MP-GenProt "membrane-bound ATP synthase, F1 sector, gamma-subunit" Metabolism of small molecules b3734 atpA 16689 P 25 P 17 P(m) 17 MP-GenProt "membrane-bound ATP synthase, F1 sector, alpha-subunit" Cell processes b3735 atpH 36217 P 7 P 2 P(m) 1 MP-GenProt "membrane-bound ATP synthase, F1 sector, delta-subunit" Metabolism of small molecules b3736 atpF 28649 P 10 P 3 P(m) 3 MP-GenProt "membrane-bound ATP synthase, F0 sector, subunit b" Cell processes b3744 asnA 412 P 13 P 2 0 asparagine synthetase A Metabolism of small molecules b3751 rbsB 11090 P 13 P 3 0 D-ribose periplasmic binding protein Cell processes b3752 rbsK 876 P 13 0 0 ribokinase Metabolism of small molecules b3764 yifE 1367 P 8 P 1 0 "orf, hypothetical protein" Open reading frames b3781 trxA 5763 P 8 P 5 0 thioredoxin 1 Metabolism of small molecules b3783 rho 2414 P 21 P 11 P(m) 1 transcription termination factor Rho; polarity suppressor Macromolecule metabolism b3785 wzzE 964 P 16 P 1 P(m) 1 GenProt putative transport protein Open reading frames b3803 hemX 2492 P 21 P 5 P(m) 5 uroporphyrinogen III methylase Metabolism of small molecules b3805 hemC 2018 P 17 0 0 porphobilinogen deaminase = hydroxymethylbilane synthase Metabolism of small molecules b3809 dapF 3481 P 8 0 0 diaminopimelate epimerase Metabolism of small molecules b3826 yigL 714 P 10 0 0 "orf, hypothetical protein" Open reading frames b3831 udp 1535 P 10 P 1 0 uridine phosphorylase Metabolism of small molecules b3833 ubiE 2156 P 12 P 1 0 "2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone" Metabolism of small molecules b3836 tatA 3868 P 6 P 1 P(m) 1 GenProt Component of translocase Open reading frames b3838 b3838 2343 P 8 0 0 "orf, hypothetical protein" Miscellaneous b3847 pepQ 2496 P 20 P 5 0 proline dipeptidase Macromolecule metabolism b3860 dsbA 2297 P 10 P 1 0 "protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction" Macromolecule metabolism b3870 glnA 3685 P 20 P 12 P(m) 3 glutamine synthetase Metabolism of small molecules b3871 yihK 2901 P 20 P 9 0 putative GTP-binding factor Miscellaneous b3908 sodA 20896 P 8 P 9 0 "superoxide dismutase, manganese" Cell processes b3916 pfkA 2928 P 18 P 2 0 6-phosphofructokinase I Metabolism of small molecules b3919 tpiA 7653 P 10 P 1 0 triosephosphate isomerase Metabolism of small molecules b3926 glpK 17449 P 28 P 22 P(m) 3 glycerol kinase Metabolism of small molecules b3928 yiiU 1607 P 4 P 2 0 "orf, hypothetical protein" Open reading frames b3931 hslU 1558 P 26 P 7 0 "heat shock protein hslVU, ATPase subunit, homologous to chaperones" Cell processes b3945 gldA 217 P 13 0 0 PHD "glycerol dehydrogenase, (NAD)" Metabolism of small molecules b3956 ppc 2997 P 47 P 18 0 phosphoenolpyruvate carboxylase Metabolism of small molecules b3965 trmA 590 P 19 0 0 tRNA (uracil-5-)-methyltransferase Macromolecule metabolism b3966 btuB 299 P 31 P 4 P(m) 4 MP-GenProt "outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23" Structural elements b3982 nusG 5933 P 10 P 5 0 component in transcription antitermination Macromolecule metabolism b3984 rplA 28105 P 12 P 9 P(m) 3 "50S ribosomal subunit protein L1, regulates synthesis of L1 and L11" Structural elements b3985 rplJ 34311 P 8 P 7 0 50S ribosomal subunit protein L10 Structural elements b3986 rplL 23694 P 5 P 6 P(m) 1 50S ribosomal subunit protein L7/L12 Structural elements b3987 rpoB 8885 P 63 P 31 0 "RNA polymerase, beta subunit" Miscellaneous b3991 thiG 4139 P 13 P 3 0 "thiamin biosynthesis, thiazole moiety" Metabolism of small molecules b3993 thiE 4076 P 9 P 2 0 "thiamin biosynthesis, thiazole moiety" Metabolism of small molecules b3997 hemE 1145 P 14 0 0 uroporphyrinogen decarboxylase Metabolism of small molecules b4005 purD 1053 P 17 P 5 0 phosphoribosylglycinamide synthetase = GAR synthetase Metabolism of small molecules b4006 purH 3168 P 28 P 10 0 phosphoribosylaminoimidazolecarboxamideformyltransferase = AICAR formyltransferase; IMP cyclohydrolase Metabolism of small molecules b4015 aceA 30099 P 20 P 34 P(m) 7 isocitrate lyase Metabolism of small molecules b4034 malE 3061 P 24 P 3 0 periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis Cell processes b4035 malK 1416 P 17 0 0 ATP-binding component of transport system for maltose Cell processes b4036 lamB 3422 P 17 P 1 P(m) 1 GenProt phage lambda receptor protein; maltose high-affinity receptor Cell processes b4043 lexA 1002 P 10 0 0 regulator for SOS(lexA) regulon Global functions b4052 dnaB 1658 P 28 P 1 0 replicative DNA helicase; part of primosome Macromolecule metabolism b4054 tyrB 1196 P 17 P 5 0 "tyrosine aminotransferase, tyrosine repressible" Metabolism of small molecules b4066 yjcF 19 A 17 0 0 "orf, hypothetical protein" Open reading frames b4108 phnA 2675 P 4 0 0 "orf, hypothetical protein" Open reading frames b4122 fumB 43 A 32 0 0 fumarase B= fumarate hydratase Class I; anaerobic isozyme Metabolism of small molecules b4139 aspA 1704 P 20 P 3 0 aspartate ammonia-lyase (aspartase) Metabolism of small molecules b4142 mopB 35460 P 6 P 5 P(m) 1 "GroES, 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity" Cell processes b4143 mopA 10097 P 26 P 13 P(m) 4 "GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein" Cell processes b4147 efp 6703 P 4 P 2 0 elongation factor P (EF-P) Macromolecule metabolism b4153 frdB 883 P 9 P 2 P(m) 2 "fumarate reductase, anaerobic, iron-sulfur protein subunit" Metabolism of small molecules b4154 frdA 1593 P 32 P 1 0 "fumarate reductase, anaerobic, flavoprotein subunit" Metabolism of small molecules b4160 psd 1157 P 12 P 4 P(m) 4 GenProt phosphatidylserine decarboxylase; phospholipid synthesis Macromolecule metabolism b4162 yjeR 835 P 8 P 2 0 "orf, hypothetical protein" Open reading frames b4175 hflC 2685 P 16 P 4 P(m) 4 protease specific for phage lambda cII repressor Macromolecule metabolism b4177 purA 2778 P 21 P 15 0 adenylosuccinate synthetase Metabolism of small molecules b4180 yjfH 173 A 9 P 1 0 "orf, hypothetical protein" Macromolecule metabolism b4200 rpsF 23491 P 7 P 2 0 30S ribosomal subunit protein S6 Structural elements b4203 rplI 2574 P 10 P 5 P(m) 3 50S ribosomal subunit protein L9 Structural elements b4207 fklB 3787 P 10 P 4 0 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) Macromolecule metabolism b4213 cpdB 524 P 31 P 2 0 2':3'-cyclic-nucleotide 2'-phosphodiesterase Metabolism of small molecules b4214 cysQ 464 P 10 P 1 0 affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis Metabolism of small molecules b4216 ytfJ 1019 P 7 0 0 "orf, hypothetical protein" Open reading frames b4219 msrA 1447 P 7 P 2 0 peptide methionine sulfoxide reductase Macromolecule metabolism b4226 ppa 3081 P 11 P 4 0 inorganic pyrophosphatase Metabolism of small molecules b4227 ytfQ 908 P 13 P 2 0 putative LACI-type transcriptional regulator Cell processes b4232 fbp 2607 P 14 P 3 0 fructose-bisphosphatase Metabolism of small molecules b4235 pmbA 1085 P 25 P 2 0 "maturation of antibiotic MccB17, see tld genes" Macromolecule metabolism b4243 yjgF 11796 P 7 P 2 0 "orf, hypothetical protein" Open reading frames b4244 pyrI 36636 P 9 P 8 0 "aspartate carbamoyltransferase, regulatory subunit" Metabolism of small molecules b4245 pyrB 39294 P 19 P 14 P(m) 2 "aspartate carbamoyltransferase, catalytic subunit" Metabolism of small molecules b4291 fecA 211 A 31 0 0 MP-GenProt "outer membrane receptor; citrate-dependent iron transport, outer membrane receptor" Cell processes b4328 iadA 224 P 19 0 0 isoaspartyl dipeptidase Macromolecule metabolism b4355 tsr 359 A 29 0 0 GenProt "methyl-accepting chemotaxis protein I, serine sensor receptor" Cell processes b4375 prfC 1117 P 23 P 3 0 peptide chain release factor RF-3 Macromolecule metabolism b4376 osmY 6115 P 7 P 3 0 hyperosmotically inducible periplasmic protein Cell processes b4383 deoB 2940 P 19 P 7 0 phosphopentomutase Metabolism of small molecules b4392 slt 746 P 41 P 4 0 soluble lytic murein transglycosylase Structural elements Lopez-Campistrous et al. (2005) identified 575 proteins of E.coli on 2D gel maps. The data was extracted from supplementary data pdf file. One protein could not be matched to a B number and thus was removed from consideration. Annotation information according to Blattner et al (1997). Functional categories are assigned as defined by Riley and Labedan (1996). Membrane protein assignment (see Corbin et al. 2003): MP - list # 1, GenProt - list #2, PHD - list #3.