B number	Weber - down-regulated genes	Weber - up-regulated genes	Gene Description	C2/C1	C5/C4	
b4016		aceK	isocitrate dehydrogenase kinase/phosphatase	0.3	0.3	
b4017		arpA	regulator of acetyl CoA synthetase	-0.9	0.3	
b3570		bax	putative ATP-binding protein	1.5	3.2	
b0484		copA	Cu(I)-translocating P-type ATPase	0.7	-0.2	
b2417		crr	PTS system, glucose-specific IIA component	0.2	-0.1	
b0339		cynT	carbonic anhydrase	-1.0	-0.1	
b3639		dfp	flavoprotein affecting synthesis of DNA and pantothenate metabolism	0.0	0.1	
b2321		div/flk	flagellar assembly protein	0.0	0.2	
b0812		dps	global regulator, starvation conditions	0.6	-0.4	
b0912		himD	integration host factor (IHF), beta subunit; site-specific recombination	0.1	-0.5	
b0072		leuC	3-isopropylmalate isomerase (dehydratase) subunit	0.2	0.0	
b0181		lpxA	UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis	0.5	1.1	
b3008		metC	cystathionine beta-lyase (beta-cystathionase)	0.3	0.3	
b3941		metF	5,10-methylenetetrahydrofolate reductase	-0.1	0.3	
b0783		moaC	molybdopterin biosynthesis, protein C	0.4	-0.3	
b0827		moeA	molybdopterin biosynthesis	0.2	0.2
b1482		osmC	osmotically inducible protein	1.4	0.9
b4376		osmY	hyperosmotically inducible periplasmic protein	1.1	0.1
b1896		otsA	trehalose-6-phosphate synthase	1.4	0.6
b1897		otsB	trehalose-6-phosphate phophatase, biosynthetic	0.9	1.3
b4111		proP	low-affinity transport system; proline permease II	0.8	1.6
b2677		proV	ATP-binding component of transport system for glycine, betaine and proline	4.1	6.2
b2678		proW	high-affinity transport system for glycine betaine and proline	4.3	5.7
b2679		proX	high-affinity transport system for glycine betaine and proline	3.8	5.1
b0415		ribE	riboflavin synthase, beta chain	0.0	-0.2
b1652		rnt	RNase T, degrades tRNA	0.4	0.8
b2741		rpoS	RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins	0.2	0.7
b2011		sbcB	exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase	0.2	0.3
b1098		tmk	thymidylate kinase	0.0	0.1
b2894		xerD	site-specific recombinase	0.0	0.4
b0413		ybaD	orf, hypothetical protein	0.1	-0.1
b0539		ybcC	putative exonuclease (EC 3.1.11.3) similar to lambda	-1.2	-2.5
b0601		ybdM	orf, hypothetical protein	-0.5	0.3
b0607		ybdQ	orf, hypothetical protein	-0.9	-0.2
b0753		ybgS	putative homeobox protein	0.0	0.3
b1253		yciA	orf, hypothetical protein	-0.1	0.2
b2101		yegW	putative transcriptional regulator	-0.2	0.0
b2524		yfhJ	orf, hypothetical protein	0.2	-0.4
b4048		yjbM	orf, hypothetical protein	-1.2	0.1
b4248		yjgH	orf, hypothetical protein	-0.7	-0.1
b1155		ymfS	orf, hypothetical protein	-1.4	0.2
b0605	ahpC		alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides	0.5	-0.6
b1415	aldA		aldehyde dehydrogenase, NAD-linked	0.9	2.3
b4085	alsE		putative epimerase	-0.8	0.5
b0978	appC		probable third cytochrome oxidase, subunit I	-0.9	-4.2
b1693	aroD		3-dehydroquinate dehydratase	0.0	-0.8
b3433	asd		aspartate-semialdehyde dehydrogenase	0.3	0.0
b3731	atpC		membrane-bound ATP synthase, F1 sector, epsilon-subunit	-0.2	0.0
b3736	atpF		membrane-bound ATP synthase, F0 sector, subunit b	0.2	-0.2
b3735	atpH		membrane-bound ATP synthase, F1 sector, delta-subunit	0.2	0.0
b3739	atpI		membrane-bound ATP synthase, dispensable protein, affects expression of atpB	0.0	0.4
b0032	carA		carbamoyl-phosphate synthetase, glutamine (small) subunit	-0.2	0.6
b0033	carB		carbamoyl-phosphate synthase large subunit	-0.4	0.7
b3556	cspA		cold shock protein 7.4, transcriptional activator of hns	0.0	0.2
b0430	cyoC		cytochrome o ubiquinol oxidase subunit III	0.2	0.0
b2752	cysD		ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2	-0.7	-1.0
b2762	cysH		3'-phosphoadenosine 5'-phosphosulfate reductase	0.1	-1.0
b2763	cysI		sulfite reductase, alpha subunit	-0.2	-0.9
b2764	cysJ		sulfite reductase (NADPH), flavoprotein beta subunit	-0.2	-1.0
b2414	cysK		cysteine synthase A, O-acetylserine sulfhydrolase A	0.0	-0.6
b2421	cysM		cysteine synthase B, O-acetylserine sulfhydrolase B	-0.6	-0.5
b2423	cysW		sulfate transport system permease W protein	-0.3	-0.5
b0031	dapB		dihydrodipicolinate reductase	0.3	0.5
b3892	fdoI		formate dehydrogenase, cytochrome B556 (FDO) subunit	0.1	0.0
b1334	fnr		transcriptional regulation of aerobic, anaerobic respiration, osmotic balance	0.3	0.5
b2153	folE		GTP cyclohydrolase I	0.2	-0.3
b2169	fruB		PTS system, fructose-specific IIA/fpr component	-0.7	0.8
b0890	ftsK		cell division protein	0.8	0.5
b3933	ftsN		essential cell division protein	-0.1	0.1
b0095	ftsZ		cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase	0.1	-0.3
b1779	gapA		glyceraldehyde-3-phosphate dehydrogenase A	0.1	-0.3
b2096	gatY		tagatose-bisphosphate aldolase 1	-0.7	0.5
b2903	gcvP		glycine decarboxylase, P protein of glycine cleavage system	0.2	-0.4
b1761	gdhA		NADP-specific glutamate dehydrogenase	0.1	0.4
b3429	glgA		glycogen synthase	0.2	-0.1
b3212	gltB		glutamate synthase, large subunit	0.7	-0.2
b3213	gltD		glutamate synthase, small subunit	0.6	-0.1
b0755	gpmA		phosphoglyceromutase 1	0.3	-0.4
b2021	hisC		histidinol-phosphate aminotransferase	0.1	-0.7
b4000	hupA		DNA-binding protein HU-alpha (HU-2)	0.4	-0.3
b0440	hupB		DNA-binding protein HU-beta, NS1 (HU-1)	0.0	0.0
b0977	hyaF		nickel incorporation into hydrogenase-1 proteins	-0.8	-1.5
b0026	ileS		isoleucine tRNA synthetase	0.5	0.3
b0918	kdsB		CTP:CMP-3-deoxy-D-manno-octulosonate transferase	0.0	-0.1
b0071	leuD		isopropylmalate isomerase subunit	0.4	0.0
b1677	lpp		murein lipoprotein	0.0	-0.7
b3829	metE		tetrahydropteroyltriglutamate methyltransferase	1.1	0.8
b3396	mrcA		peptidoglycan synthetase; penicillin-binding protein 1A	-0.3	0.8
b0635	mrdA		cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2	0.1	0.6
b3189	murA		first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase	0.0	0.0
b0569	nfrB		bacteriophage N4 receptor, subunit, inner membrane protein	-0.9	0.1
b2284	nuoF		NADH dehydrogenase I chain F	1.2	-0.2
b0929	ompF		outer membrane protein 1a (Ia;b;F)	-0.3	-0.6
b0565	ompT		outer membrane protein 3b (a), protease VII	0.3	-0.3
b3724	phoU		negative regulator for pho regulon and putative enzyme in phosphate metabolism	-0.4	-0.9
b2891	prfB		peptide chain release factor RF-2	0.2	-0.1
b4201	priB		primosomal replication protein N	0.2	0.4
b3300	prlA		putative ATPase subunit of translocase	0.2	0.1
b0243	proA		gamma-glutamylphosphate reductase	0.0	-0.6
b1305	pspB		phage shock protein	-0.1	0.4
b3204	ptsN		phosphotransferase system enzyme IIA, regulates N metabolism	0.5	-0.2
b2312	purF		amidophosphoribosyltransferase = PRPP amidotransferase	0.1	-0.3
b4245	pyrB		aspartate carbamoyltransferase, catalytic subunit	-0.7	2.2
b3751	rbsB		D-ribose periplasmic binding protein	0.3	0.4
b1564	relB		negative regulator of translation	-0.2	-0.1
b3320	rplC		50S ribosomal subunit protein L3	0.4	-0.2
b3319	rplD		50S ribosomal subunit protein L4, regulates expression of S10 operon	0.2	0.1
b3308	rplE		50S ribosomal subunit protein L5	0.2	-0.3
b3305	rplF		50S ribosomal subunit protein L6	0.2	0.0
b4203	rplI		50S ribosomal subunit protein L9	0.1	0.5
b3186	rplU		50S ribosomal subunit protein L21	0.3	-0.1
b3318	rplW		50S ribosomal subunit protein L23	0.4	0.0
b3309	rplX		50S ribosomal subunit protein L24	0.3	-0.1
b1717	rpmI		50S ribosomal subunit protein A	-0.2	-0.3
b0911	rpsA		30S ribosomal subunit protein S1	0.3	-0.1
b3230	rpsI		30S ribosomal subunit protein S9	-0.2	0.5
b3321	rpsJ		30S ribosomal subunit protein S10	0.4	-0.2
b3307	rpsN		30S ribosomal subunit protein S14	0.2	-0.2
b4202	rpsR		30S ribosomal subunit protein S18	0.2	0.3
b3316	rpsS		30S ribosomal subunit protein S19	0.2	0.0
b0023	rpsT		30S ribosomal subunit protein S20	-0.1	0.2
b0721	sdhC		succinate dehydrogenase, cytochrome b556	0.7	0.6
b0722	sdhD		succinate dehydrogenase, hydrophobic subunit	0.3	0.1
b3349	slyD		FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	0.1	-0.2
b0729	sucD		succinyl-CoA synthetase, alpha subunit	0.4	0.1
b3017	sufI		suppressor of ftsI	-0.2	0.0
b0004	thrC		threonine synthase	0.0	0.5
b1719	thrS		threonine tRNA synthetase	0.2	0.0
b0436	tig		trigger factor; a molecular chaperone involved in cell division	0.4	0.0
b1274	topA		DNA topoisomerase type I, omega protein	0.2	0.3
b1324	tpx		thiol peroxidase	0.2	-0.1
b2607	trmD		tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase	0.1	-0.1
b1261	trpB		tryptophan synthase, beta protein	0.0	0.2
b3495	uspA		universal stress protein; broad regulatory function?	-0.1	-0.2
b0682	ybfN		orf, hypothetical protein	-1.0	-0.2
b0944	ycbF		putative chaperone	-0.2	0.7
b0983	yccZ		putative function in exopolysaccharide production	-0.5	0.0
b1016	ycdN_1		orf, hypothetical protein	-0.2	0.9
b1191	ycgO		orf, hypothetical protein	-0.1	0.9
b1701	ydiD		putative ligase/synthetase	-0.5	0.4
b3233	yhcB		orf, hypothetical protein	0.1	-0.2
b3584	yiaT		putative outer membrane protein	-0.8	0.1
b2140	yohI		putative regulator protein	0.0	0.5