B number	Gene Name	Gene Description	C4/C1 - Fold Change	C5/C2 - Fold Change	Richmond - down-regulated genes	Richmond - up-regulated genes
b3686	ibpB	heat shock protein	1.5	3.2		327.2
b3687	ibpA	heat shock protein	2.3	2.1		297.4
b0015	dnaJ	chaperone with DnaK; heat shock protein	1.5	1.6		85.3
b4142	groS	GroES, 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity	2.3	1.6		77.5
b0014	dnaK	chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins	2.0	1.5		58.5
b3400	hslR	Hsp15. DNA/RNA binding heat shock protein	1.3	1.3		51.3
b4140	fxsA	Suppressor of F exclusion of bacteriophage T7.	-1.1	1.4		50.7
b4143	groL	GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein	2.5	1.7		37.9
b2592	clpB	heat shock protein	2.7	2.6		36.5
b1829	htpX	heat shock protein, integral membrane protein	1.9	1.1		36.1
b0400	phoR	positive and negative sensor protein for pho regulon	-3.1	-1.4		34.5
b0966	yccV	orf, hypothetical protein	1.3	1.6		34.3
b0473	htpG	chaperone Hsp90, heat shock protein C 62.5	2.4	2.0		33.8
b0016	yi81_1	IS186 hypothetical protein	1.3	1.3		32.9
b1967	yedU	orf, hypothetical protein	18.5	12.8		30.5
b2394	yi81_3	IS186 hypothetical protein	1.0	1.0		29.6
b0315	yahA	orf, hypothetical protein	1.3	6.6		28.9
b0399	phoB	positive response regulator for pho regulon, sensor is PhoR (or CreC)	-4.0	-1.9		28.2
b0582	yi81_2	IS186 hypothetical protein	1.0	1.0		27.3
b1060	yceP	orf, hypothetical protein	-2.3	-1.4		25.5
b2614	grpE	phage lambda replication; host DNA synthesis; heat shock protein; protein repair	1.9	1.5		24.1
b0017	yi82_1	IS186 and IS421 hypothetical protein	-3.8	1.4		22.8
b3343	yheL	orf, hypothetical protein	1.1	-1.1		22
b3401	hslO	Hsp33. Redox regulated chaperone	1.1	1.3		21.6
b0439	lon	DNA-binding, ATP-dependent protease La; heat shock K-protein	1.3	1.0		20.3
b1322	ycjF	orf, hypothetical protein	1.6	2.1		19.8
b3498	prlC	oligopeptidase A	1.1	1.1		16.7
b3932	hslV	heat shock protein hslVU, proteasome-related peptidase subunit	1.5	1.4		16.2
b4209	ytfE	orf, hypothetical protein	1.0	1.4		13.7
b0210	yafE	putative biotin synthesis protein	-1.9	-1.5		12.2
b1112	ycfR	orf, hypothetical protein	2.6	1.5		12.2
b3635	mutM	formamidopyrimidine DNA glycosylase	-1.0	1.2		12.2
b3399	yrfG	putative phosphatase	1.0	-1.1		12.1
b4171	miaA	delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase	1.3	1.3		11.9
b3931	hslU	heat shock protein hslVU, ATPase subunit, homologous to chaperones	1.8	1.5		10.3
b0492	ybbN	putative thioredoxin-like protein	1.4	1.0		9.9
b0660	ybeZ	putative ATP-binding protein in pho regulon	1.4	1.2		9.6
b3293	yhdN	orf, hypothetical protein	1.7	1.3		9.5
b3179	rrmJ	cell division protein	-1.1	-1.4		9.1
b2613	yfjD	putative transport protein	-1.1	-1.1		9
b1530	marR	multiple antibiotic resistance protein; repressor of mar operon	1.4	1.9		8.5
b3067	rpoD	RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures	1.9	1.3		7.7
b0209	yafD	orf, hypothetical protein	-1.1	-1.1		6.7
b3022	ygiU	orf, hypothetical protein	1.0	2.5		6.7
b0881	yljA	orf, hypothetical protein	1.3	1.4		6.5
b1531	marA	multiple antibiotic resistance; transcriptional activator of defense systems	3.3	4.1		6.2
b1274	topA	DNA topoisomerase type I, omega protein	-1.1	-1.0		5.9
b0659	ybeY	orf, hypothetical protein	1.6	1.2		5.8
b4239	treC	trehalase 6-P hydrolase	-1.0	5.4		5.8
b0880	cspD	stress induced DNA replication inhibitor.	2.0	3.1		5.5
b0879	macB	putative ATP-binding component of a transport system	1.0	1.0		5.2
b4141	yjeH	putative transport	-1.9	-1.1		5.1
b4172	hfq	host factor I for bacteriophage Q beta replication, a growth-related protein	-1.2	-1.3		4.5
b4131	cadA	lysine decarboxylase 1	-1.7	1.3		4.4
b0316	yahB	putative transcriptional regulator LYSR-type	-2.6	-1.4		4.3
b2193	narP	nitrate/nitrite response regulator (sensor NarQ)	1.6	1.9		4.2
b3685	yidE	putative transport protein	-2.1	-1.2		3.9
b4246	pyrL	pyrBI operon leader peptide	-1.8	1.4		3.9
b0882	clpA	ATP-binding component of serine protease	1.1	-1.3		3.8
b4398	creB	catabolic regulation response regulator	-1.4	1.5		3.4
b0437	clpP	ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5	1.1	-1.0		3.3
b4173	hflX	GTP - binding subunit of protease specific for phage lambda cII repressor	-1.0	-1.1		3.3
b0033	carB	carbamoyl-phosphate synthase large subunit	1.4	3.0		3.2
b1874	cutC	copper homeostasis protein	-1.1	1.2		3.2
b4245	pyrB	aspartate carbamoyltransferase, catalytic subunit	-2.1	3.8		3.1
b0438	clpX	ATP-dependent specificity component of clpP serine protease, chaperone	1.0	-1.2		2.9
b4117	adiA	biodegradative arginine decarboxylase	-1.5	1.7		2.9
b0281	intF	putative phage integrase	4.1	4.9		2.8
b0032	carA	carbamoyl-phosphate synthetase, glutamine (small) subunit	1.2	2.3		2.7
b0374	yaiU	putative flagellin structural protein	-3.1	1.1		2.7
b4115	yjdE	putative amino acid/amine transport protein, cryptic	1.0	1.0		2.5
b3402	yhgE	putative transport	-1.5	1.0		2.4
b2476	purC	phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase	1.5	1.2		2.2
b2497	uraA	uracil transport	-3.6	1.2		2.2
b2796	sdaC	probable serine transporter	1.3	1.5		2.2
b0336	codB	cytosine permease/transport	-2.7	1.4		2.1
b0491	ybbM	putative metal resistance protein	-1.6	-1.4		2
b0522	purK	phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit	-1.1	1.1		2
b4132	cadB	transport of lysine/cadaverine	-2.5	1.6		2
b0523	purE	phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit	1.0	1.1		1.9
b3413	yhgH	orf, hypothetical protein	-1.2	-1.4		1.9
b2313	cvpA	membrane protein required for colicin V production	1.7	1.2		1.8
b2500	purN	phosphoribosylglycinamide formyltransferase 1	1.0	-1.2		1.5
b0572	cusC	putative resistance protein	-1.2	-1.9		1.4
b3280	yrdB	orf, hypothetical protein	-1.1	-1.7		1.3
b3512	yhiE	orf, hypothetical protein	9.5	3.7		1.3
b4244	pyrI	aspartate carbamoyltransferase, regulatory subunit	-2.3	3.8		1.3
b3114	tdcE	probable formate acetyltransferase 3	-1.7	1.7		1.2
b0973	hyaB	hydrogenase-1 large subunit	5.3	1.5		1
b2572	rseA	sigma-E factor, negative regulatory protein	1.5	1.3		1
b2573	rpoE	RNA polymerase, sigma-E factor; heat shock and oxidative stress	1.7	1.7		1
b3816	corA	Mg2+ transport, system I	1.0	1.6		1
b4208	cycA	transport of D-alanine, D-serine, and glycine	-2.3	-1.5		1
b0337	codA	cytosine deaminase	-1.6	1.3	-1	
b1062	pyrC	dihydro-orotase	1.3	1.3	-1	
b1903	b1903	orf, hypothetical protein	-1.6	1.6	-1
b2498	upp	uracil phosphoribosyltransferase	-2.3	1.0	-1
b3669	uhpA	response regulator, positive activator of uhpT transcription (sensor, uhpB)	-1.4	1.6	-1
b0116	lpdA	lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex	1.2	1.3	-1.1
b0945	pyrD	dihydro-orotate dehydrogenase	-1.3	2.1	-1.1
b1132	ycfC	orf, hypothetical protein	-1.0	1.0	-1.2
b2945	endA	DNA-specific endonuclease I	-1.9	1.4	-1.2
b1593	ynfK	orf, hypothetical protein	1.0	1.2	-1.4
b2508	guaB	IMP dehydrogenase	1.4	1.1	-1.8
b0411	tsx	nucleoside channel; receptor of phage T6 and colicin K	-2.2	1.2	-2.2
b1131	purB	adenylosuccinate lyase	2.0	1.3	-2.3
b1782	mipA	Scaffolding protein for murein-synthesising holoenzyme.	-1.2	1.1	-2.8
b1888	cheA	sensory transducer kinase between chemo- signal receptors and CheB and CheY	-9.7	-9.9	-3.3
b2507	guaA	GMP synthetase (glutamine-hydrolyzing)	1.0	1.0	-3.3
b1924	fliD	flagellar biosynthesis; filament capping protein; enables filament assembly	-29.7	-22.6	-4.8
b1887	cheW	positive regulator of CheA protein activity	-9.8	-11.1	-6
b2297	pta	phosphotransacetylase	1.3	1.8	-6
b2779	eno	enolase	2.0	1.5	-6.7
b2551	glyA	serine hydroxymethyltransferase	-1.0	-1.0	-8.1
b1676	pykF	pyruvate kinase I (formerly F), fructose stimulated	2.3	1.4	-9.2
b0903	pflB	formate acetyltransferase 1	1.0	1.0	-10
b2286	nuoC	NADH dehydrogenase I chain C, D	2.2	1.2	-10.4
b2925	fbaA	fructose-bisphosphate aldolase, class II	1.4	1.1	-12.5
b1076	flgE	flagellar biosynthesis, hook protein	-27.4	-25.5	-22.7