P. Gyaneshwar, O. Paliy, J. McAuliffe, D.L. Popham, M.I. Jordan and S. Kustu
Sulfur and nitrogen limitation in Escherichia coli K12 (2005) J. Bacteriol., 187(3), 2074-1090.
Full text (pdf)
P. Gyaneshwar, O. Paliy, J. McAuliffe, A. Jones, M.I. Jordan and S. Kustu
Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitation (2005) Proc. Natl. Acad. Sci. USA, 102(9), 3453-3458.
Full text (pdf)
Supplementary material to both papers:
- K-means clustering:
- Adapted - 12 clusters: centroid view; expression view; individual clusters (K1, K3, K4, K5, K7, K8, K9, K10, K11; coloring accoridng to hierarchical tree color codes)
- Adapted - 15 clusters: centroid view; expression view
- Adapted - 65 clusters: expression view
- Shifts - 11 clusters: centroid view; expression view; individual clusters (K1, K3, K8, K9, K10, K11; coloring accoridng to hierarchical tree color codes)
- Shifts - 65 clusters: expression view
- Hierarchical Clustering:
- Adapted - full tree (no gene names)
- Shifts - full tree (no gene names)
- Separate clusters with gene names can be provided upon request
- Growth curves of wild type E. coli K12 strain NCM3722 during nitrogen or sulfur shifts (pdf<>)
- RpoS-regulated genes detected by numerical analysis (paper 1, Fig.2) (pdf)
- Data support for genes in Paper 1, Table 1 (pdf)
- Cysteine and methionine content of Cys and Met E. coli proteins (pdf)
- Raw data files:
- Effect of an rpoS disruption on shifts from optimal to alternative nutrient sources: growth curves (a: pdf) (b: pdf)
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