Paliy Lab
Diggs Laboratory for Life Science Research : Department of Biochemistry and Molecular Biology : Wright State University
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P. Gyaneshwar, O. Paliy, J. McAuliffe, D.L. Popham, M.I. Jordan and S. Kustu

Sulfur and nitrogen limitation in Escherichia coli K12 (2005) J. Bacteriol., 187(3), 2074-1090.


Full text (pdf)


P. Gyaneshwar, O. Paliy, J. McAuliffe, A. Jones, M.I. Jordan and S. Kustu

Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitation (2005) Proc. Natl. Acad. Sci. USA, 102(9), 3453-3458.


Full text (pdf)


Supplementary material to both papers:


  • K-means clustering:
  • Hierarchical Clustering:

    • Adapted - full tree (no gene names)

    • Shifts - full tree (no gene names)

    • Separate clusters with gene names can be provided upon request

  • Growth curves of wild type E. coli K12 strain NCM3722 during nitrogen or sulfur shifts (pdf<>)

  • RpoS-regulated genes detected by numerical analysis (paper 1, Fig.2) (pdf)

  • Data support for genes in Paper 1, Table 1 (pdf)

  • Cysteine and methionine content of Cys and Met E. coli proteins (pdf)

  • Raw data files:
  • Effect of an rpoS disruption on shifts from optimal to alternative nutrient sources: growth curves (a: pdf) (b: pdf)

 
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