E. Soupene, W.C. van Heeswijk, J. Plumbridge, V. Stewart, D. Bertenthal, H. Lee, G. Prasad, O. Paliy, P. Charernnoppakul, and S. Kustu
Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression. (2003) J. Bacteriol., 185(18), 5611-5626.
Full text (pdf)
Comparison of E. coli strains using glass slide and Affymetrix microarrays - expanded section (pdf)
Supplementary material:
- Protocol for preparation, labeling, and hybridization of samples to GeneChips
- CGSC6300(MG1655)-NCM3722 (WT) comparison on Affymetrix E. coli Antisense GeneChips and glass slide DNA microarrays
- All data (tab-delimited txt file, export to Excel or another appropriate program to align)
- Operons mentioned in the paper (pdf)
- Glutamine-ammonium comparison for CGSC6300 (MG1655) and E. coli urinary tract isolates on glass slide DNA microarrays
- All data (tab-delimited txt file, export to Excel or another appropriate program to align)
- Genes of NtrC regulon (pdf)
- Genes overexpressed on glutamine in all strains (pdf)
- Genes overexpressed on ammonium chloride in all strains (pdf)
- Genes overexpressed on glutamine in CGSC6300 only (pdf)
- Genes overexpressed on ammonium chloride in CGSC6300 only (pdf)
- Ethanolamine-ammonium comparison for NCM3722 (WT) and NCM3954 (eut+) on glass slide DNA microarrays: genes overexpressed on ethanolamine (pdf)
|