B number Gene name CGSC6300 #1 CGSC6300 #2 CGSC6300 #3* NCM3601 NCM3610 NCM3611 CGSC6300 average UTI Average Gene description b0001 thrL 1.14 1.10 0.73 0.92 1.38 1.12 1.01 thr operon leader peptide b0002 thrA 0.53 0.59 0.74 1.04 0.80 0.85 0.62 0.90 "aspartokinase I, homoserine dehydrogenase I" b0003 thrB 0.60 0.72 1.05 1.00 0.84 0.66 0.96 homoserine kinase b0004 thrC 0.59 0.49 0.88 0.84 0.75 0.73 0.65 0.77 threonine synthase b0005 b0005 0.89 0.74 1.01 1.13 0.72 0.79 0.88 0.88 "orf, hypothetical protein" b0006 yaaA 1.03 0.86 1.02 0.89 0.93 0.96 0.97 0.93 "orf, hypothetical protein" b0007 yaaJ 1.04 1.06 1.25 0.91 0.94 0.94 1.12 0.93 inner membrane transport protein b0008 talB 0.57 0.79 0.94 0.64 0.73 0.78 0.77 0.72 transaldolase B b0009 mog 1.01 0.83 1.25 0.89 0.91 0.95 1.03 0.92 required for the efficient incorporation of molybdate into molybdoproteins b0010 yaaH 0.96 1.83 1.04 0.89 0.91 1.01 1.28 0.94 "orf, hypothetical protein" b0011 b0011 1.08 1.33 1.27 0.99 0.89 1.03 1.23 0.97 putative oxidoreductase b0012 htgA 0.91 0.95 1.39 0.99 1.04 1.00 1.08 1.01 positive regulator for sigma 32 heat shock promoters b0013 yaaI 0.98 1.05 1.08 0.95 0.72 0.86 1.04 0.84 "orf, hypothetical protein" b0014 dnaK 0.78 0.75 1.15 0.91 0.85 0.75 0.89 0.84 chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins b0015 dnaJ 0.67 1.00 0.77 0.82 0.86 0.84 0.82 chaperone with DnaK; heat shock protein b0016 yi81_1 0.99 0.97 1.10 1.05 1.05 1.05 1.02 1.05 IS186 hypothetical protein b0017 yi82_1 0.90 0.76 1.03 1.03 0.85 0.94 0.90 0.94 IS186 and IS421 hypothetical protein b0018 gef 1.13 1.14 0.78 0.91 1.03 1.13 0.91 Gef protein interferes with membrane function when in excess b0019 nhaA 1.63 1.09 2.38 1.45 1.38 1.45 1.70 1.43 "Na+/H antiporter, pH dependent" b0020 nhaR 1.15 1.23 1.56 1.17 0.98 1.18 1.31 1.11 transcriptional activator of nhaA b0021 insB_1 1.06 0.91 0.98 1.02 0.90 1.00 0.98 0.97 IS1 protein InsB b0022 insA_1 0.94 0.89 1.05 0.97 0.86 1.01 0.96 0.95 IS1 protein InsA b0023 rpsT 0.73 0.78 1.05 0.40 0.67 0.88 0.85 0.65 30S ribosomal subunit protein S20 b0024 b0024 0.87 0.95 1.09 0.80 0.89 0.91 0.93 "orf, hypothetical protein" b0025 ribF 1.03 0.82 0.76 1.12 1.37 1.13 0.87 1.21 putative regulator b0026 ileS 0.72 0.64 0.91 0.87 0.75 0.68 0.84 isoleucine tRNA synthetase b0027 lspA 0.89 0.98 0.86 0.92 0.96 1.03 0.91 0.97 prolipoprotein signal peptidase (SPase II) b0028 slpA 0.87 0.68 0.88 1.02 0.85 0.91 0.81 0.93 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) b0029 lytB 1.12 0.67 1.09 1.11 0.86 0.90 1.02 control of stringent response; involved in penicillin tolerance b0030 yaaF 0.95 0.99 1.03 0.86 0.83 0.92 0.99 0.87 "orf, hypothetical protein" b0031 dapB 0.77 0.77 1.92 1.01 0.98 1.04 1.15 1.01 dihydrodipicolinate reductase b0032 carA 0.22 0.19 0.76 0.50 0.57 0.46 0.39 0.51 "carbamoyl-phosphate synthetase, glutamine (small) subunit" b0033 carB 0.39 0.32 0.72 0.65 0.84 0.73 0.48 0.74 carbamoyl-phosphate synthase large subunit b0034 caiF 0.51 1.27 0.82 0.91 0.87 0.89 0.87 transcriptional regulator of cai operon b0035 caiE 1.02 1.05 0.99 0.93 0.93 1.04 0.95 possible synthesis of cofactor for carnitine racemase and dehydratase b0036 caiD 0.95 1.04 1.09 1.07 1.00 1.03 1.03 1.03 carnitine racemase b0037 caiC 0.97 1.16 0.97 0.88 1.00 1.07 0.95 probable crotonobetaine/carnitine-CoA ligase b0038 caiB 1.06 1.33 1.05 1.03 1.05 1.17 1.15 1.08 l-carnitine dehydratase b0039 caiA 1.03 1.11 1.20 1.06 0.86 0.99 1.11 0.97 probable carnitine operon oxidoreductase b0040 caiT 1.09 1.43 1.11 1.07 1.03 1.20 1.21 1.10 probable carnitine transporter b0041 fixA 1.01 1.15 1.06 1.07 0.94 1.10 1.07 1.04 "probable flavoprotein subunit, carnitine metabolism" b0042 fixB 1.00 1.31 0.95 1.05 0.93 1.14 1.09 1.04 "probable flavoprotein subunit, carnitine metabolism" b0043 fixC 1.40 1.08 0.84 0.92 1.04 1.24 0.93 flavoprotein; electron transport b0044 fixX 0.94 1.18 1.08 1.09 1.02 1.14 1.07 1.08 putative ferredoxin b0045 yaaU 1.07 1.08 1.28 1.08 0.97 1.22 1.14 1.09 putative transport protein b0046 yabF 0.97 1.06 1.05 1.05 0.93 0.92 1.03 0.97 putative NAD(P)H oxidoreductase b0047 kefC 1.03 1.06 1.37 0.99 1.14 1.05 1.15 1.06 "K+ efflux antiporter, glutathione-regulated" b0048 folA 0.82 1.25 1.54 0.67 0.96 0.82 1.20 0.82 dihydrofolate reductase type I; trimethoprim resistance b0049 apaH 0.96 1.04 1.35 1.07 0.97 0.99 1.12 1.01 diadenosine tetraphosphatase b0050 apaG 0.97 1.13 1.28 1.23 1.08 1.03 1.13 1.11 "orf, hypothetical protein" b0051 ksgA 0.93 1.04 1.23 1.08 1.11 0.99 1.14 "S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase" b0052 pdxA 0.96 1.18 0.88 1.01 1.17 0.85 1.01 1.01 pyridoxine biosynthesis b0053 surA 0.82 1.11 0.84 0.88 0.94 0.97 0.89 survival protein b0054 imp 0.85 0.99 0.95 1.05 1.09 0.88 0.93 1.01 organic solvent tolerance b0055 yabH 0.94 0.89 1.16 1.13 0.97 1.17 1.00 1.09 putative DNA binding protein b0056 yabP 0.98 0.92 1.04 0.98 1.03 0.97 0.98 0.99 "orf, hypothetical protein" b0057 yabQ 0.91 0.94 0.82 1.06 0.83 0.95 0.89 0.95 "orf, hypothetical protein" b0058 yabO 0.87 0.97 1.30 1.13 0.83 1.00 1.05 0.99 "orf, hypothetical protein" b0059 hepA 0.85 1.09 0.96 1.01 0.98 0.87 0.97 0.95 probable ATP-dependent RNA helicase b0060 polB 1.13 1.26 1.03 1.15 1.24 1.16 1.14 1.18 DNA polymerase II b0061 araD 1.18 1.16 1.01 0.94 0.91 1.16 1.12 1.00 L-ribulose-5-phosphate 4-epimerase b0062 araA 0.97 1.32 1.05 1.00 0.88 0.92 1.11 0.93 L-arabinose isomerase b0063 araB 1.15 1.19 1.09 0.98 1.01 1.14 1.14 1.04 L-ribulokinase b0064 araC 0.97 1.16 0.81 0.89 0.84 0.94 0.98 0.89 transcriptional regulator for ara operon b0065 yabI 1.16 0.92 0.98 1.02 1.16 0.97 "orf, hypothetical protein" b0066 yabJ 1.07 1.08 0.94 0.87 1.02 1.10 1.03 1.00 putative ATP-binding component of a transport system b0067 yabK 0.96 0.53 0.96 0.94 0.95 0.75 0.95 putative transport system permease protein b0068 tbpA 0.82 0.94 0.81 0.88 0.75 0.74 0.86 0.79 thiamin-binding periplasmic protein b0069 yabN 1.16 1.01 0.71 1.01 1.03 1.14 0.96 1.06 putative transport protein b0070 yabM 1.01 1.22 1.01 1.02 0.98 1.11 1.00 putative transport protein b0071 leuD 1.08 1.39 1.03 0.98 1.03 1.23 1.01 isopropylmalate isomerase subunit b0072 leuC 0.84 0.87 0.96 0.96 0.64 0.69 0.89 0.76 3-isopropylmalate isomerase (dehydratase) subunit b0073 leuB 0.80 0.73 0.98 0.97 1.00 0.71 0.84 0.89 3-isopropylmalate dehydrogenase b0074 leuA 1.14 1.22 0.96 0.94 0.85 0.79 1.11 0.86 2-isopropylmalate synthase b0075 leuL 1.12 1.46 1.25 0.84 0.96 1.04 1.28 0.95 leu operon leader peptide b0076 leuO 1.03 1.14 1.32 0.91 1.06 1.00 1.16 0.99 probable transcriptional activator for leuABCD operon b0077 ilvI 0.69 0.89 0.72 0.82 0.75 0.79 0.76 "acetolactate synthase III, valine sensitive, large subunit" b0078 ilvH 0.93 0.89 0.73 0.76 0.88 0.83 0.85 0.82 "acetolactate synthase III, valine sensitive, small subunit" b0079 fruL 0.90 0.84 0.93 1.13 0.96 1.00 0.89 1.03 fruR leader peptide b0080 fruR 1.76 0.95 0.95 1.21 1.01 0.70 1.22 0.97 transcriptional repressor of fru operon and others b0081 yabB 1.11 1.18 1.30 1.26 2.38 1.65 1.20 1.76 "orf, hypothetical protein" b0082 yabC 1.35 1.12 1.32 1.19 1.21 1.38 1.26 1.26 putative apolipoprotein b0083 ftsL 1.05 1.11 1.39 1.15 0.93 1.20 1.18 1.09 cell division protein; ingrowth of wall at septum b0084 ftsI 1.93 2.32 1.56 1.04 2.47 2.21 1.94 1.91 septum formation; penicillin-binding protein 3; peptidoglycan synthetase b0085 murE 1.14 1.14 1.10 1.12 1.21 1.26 1.13 1.20 meso-diaminopimelate-adding enzyme b0086 murF 1.14 1.11 0.94 1.12 1.17 1.23 1.06 1.17 D-alanine:D-alanine-adding enzyme b0087 mraY 0.98 1.00 0.97 1.01 0.84 0.99 0.94 phospho-N-acetylmuramoyl-pentapeptide transferase? b0088 murD 1.11 1.14 1.06 1.07 1.10 1.16 1.10 1.11 UDP-N-acetylmuramoylalanine-D-glutamate ligase b0089 ftsW 1.20 1.02 0.91 0.94 1.20 0.96 cell division; membrane protein involved in shape determination b0090 murG 1.15 1.28 1.14 0.94 1.09 1.21 1.19 1.08 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase b0091 murC 1.08 0.96 0.98 0.88 1.01 1.02 1.01 0.97 "L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase" b0092 ddlB 1.06 1.20 0.90 1.14 1.23 1.13 1.09 "D-alanine-D-alanine ligase B, affects cell division" b0093 ftsQ 1.40 1.14 1.49 1.10 1.64 1.20 1.34 1.31 cell division protein; ingrowth of wall at septum b0094 ftsA 1.16 0.96 1.06 1.01 1.04 1.18 1.06 1.08 "ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes" b0095 ftsZ 1.08 0.81 1.28 1.26 1.23 0.94 1.26 cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase b0096 lpxC 0.83 0.72 1.30 0.94 0.85 1.12 0.95 0.97 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis b0097 yacA 0.55 0.75 0.91 0.98 0.92 0.87 0.74 0.92 "orf, hypothetical protein" b0098 secA 0.73 0.82 0.86 0.89 0.89 0.78 0.88 preprotein translocase; secretion protein b0099 mutT 1.02 0.94 0.97 0.85 1.02 0.92 0.98 0.93 "7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions" b0100 b0100 1.06 0.97 0.97 0.83 1.39 1.02 1.06 "orf, hypothetical protein" b0101 yacG 0.99 0.99 1.12 0.94 0.98 0.93 1.03 0.95 "orf, hypothetical protein" b0102 yacF 0.93 1.20 0.82 0.94 0.93 0.98 0.94 "orf, hypothetical protein" b0103 yacE 0.91 0.79 1.08 1.14 1.03 1.16 0.93 1.11 putative DNA repair protein b0104 guaC 0.82 0.74 1.52 0.95 0.85 0.96 1.03 0.92 GMP reductase b0105 b0105 0.98 0.92 0.71 1.01 1.05 0.70 0.87 0.92 "orf, hypothetical protein" b0106 hofC 0.96 1.27 0.94 0.97 1.11 1.11 1.01 "putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake" b0107 hofB 1.05 1.30 1.03 1.08 1.10 1.18 1.07 "putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake" b0108 ppdD 1.04 1.09 0.93 0.94 0.96 0.91 1.02 0.94 prelipin peptidase dependent protein b0109 nadC 1.29 1.00 0.95 1.06 0.97 1.15 0.99 quinolinate phosphoribosyltransferase b0110 ampD 0.99 1.09 0.95 0.87 1.05 1.04 0.96 regulates ampC b0111 ampE 1.31 1.08 0.91 0.92 0.96 1.19 0.93 regulates ampC b0112 aroP 0.79 0.68 0.79 0.63 0.91 0.70 0.75 0.75 aromatic amino acid transport protein b0113 pdhR 1.07 0.95 1.25 0.93 1.35 1.17 1.09 1.15 transcriptional regulator for pyruvate dehydrogenase complex b0114 aceE 0.85 0.79 0.53 1.08 1.30 0.79 0.72 1.06 pyruvate dehydrogenase (decarboxylase component) b0115 aceF 0.74 0.83 0.87 0.82 0.76 0.79 0.82 pyruvate dehydrogenase (dihydrolipoyltransacetylase component) b0116 lpdA 0.68 0.44 0.50 0.58 0.78 0.69 0.54 0.68 lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex b0117 yacH 0.97 1.14 1.00 1.01 0.89 1.14 1.04 1.01 putative membrane protein b0118 acnB 0.31 0.37 0.57 0.64 0.67 0.54 0.42 0.62 aconitate hydrase B b0119 yacL 1.04 1.19 1.49 1.11 1.48 1.09 1.24 1.23 "orf, hypothetical protein" b0120 speD 0.46 0.95 0.59 0.75 0.53 0.71 0.62 S-adenosylmethionine decarboxylase b0121 speE 0.52 0.99 0.71 0.87 0.49 0.76 0.69 spermidine synthase = putrescine aminopropyltransferase b0122 yacC 1.52 1.85 1.00 1.06 0.88 1.69 0.98 "orf, hypothetical protein" b0123 yacK 1.05 0.67 1.43 0.74 0.83 0.95 1.05 0.84 "orf, hypothetical protein" b0124 gcd 1.16 1.32 1.00 1.01 0.48 1.24 0.83 glucose dehydrogenase b0125 hpt 0.45 1.28 0.88 0.92 0.95 0.87 0.92 hypoxanthine phosphoribosyltransferase b0126 yadF 0.87 0.72 1.12 0.87 1.60 0.93 0.90 1.13 putative carbonic anhdrase (EC 4.2.1.1) b0127 yadG 1.10 1.03 0.99 0.88 1.12 1.03 1.04 1.01 putative ATP-binding component of a transport system b0128 yadH 0.93 1.04 1.01 1.10 0.92 1.10 0.99 1.04 "orf, hypothetical protein" b0129 yadI 1.02 1.12 1.14 1.01 0.99 0.98 1.09 0.99 putative PTS enzyme II B component b0130 yadE 0.92 1.04 1.41 1.04 0.81 0.98 1.12 0.94 "orf, hypothetical protein" b0131 panD 0.67 0.75 1.14 0.81 1.00 1.01 0.85 0.94 aspartate 1-decarboxylase b0132 yadD 0.96 1.09 1.64 0.97 1.15 0.99 1.23 1.04 "orf, hypothetical protein" b0133 panC 0.88 0.84 0.88 1.10 0.89 1.17 0.87 1.05 pantothenate synthetase b0134 panB 0.78 0.87 0.67 0.95 0.96 0.98 0.77 0.96 3-methyl-2-oxobutanoate hydroxymethyltransferase b0135 yadC 1.61 1.27 1.05 0.90 0.88 1.44 0.94 putative fimbrial-like protein b0136 yadK 0.92 1.32 1.01 1.10 1.08 1.07 1.08 1.08 putative fimbrial protein b0137 yadL 1.01 1.32 1.25 0.86 1.10 1.16 1.07 putative fimbrial protein b0138 yadM 1.02 1.01 1.09 1.26 0.91 0.99 1.04 1.05 putative fimbrial-like protein b0139 htrE 1.50 0.96 1.43 0.88 1.02 0.96 1.30 0.95 probable outer membrane porin protein involved in fimbrial assembly b0140 ecpD 0.98 1.49 1.06 1.03 1.00 0.94 1.18 0.99 probable pilin chaperone similar to PapD b0141 yadN 0.93 1.37 0.93 1.15 0.99 1.05 1.08 1.06 putative fimbrial-like protein b0142 folK 0.97 0.95 0.83 1.07 1.06 1.02 0.92 1.05 "7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase" b0143 pcnB 0.82 0.89 0.83 0.91 0.99 0.96 0.85 0.95 poly(A) polymerase I b0144 yadB 0.83 0.74 1.09 1.12 0.91 1.02 0.89 1.02 putative tRNA synthetase b0145 dksA 0.99 0.83 1.33 0.88 1.31 1.09 1.05 1.09 dnaK suppressor protein b0146 sfsA 1.26 1.30 1.54 1.39 1.35 1.41 1.37 1.38 probable regulator for maltose metabolism b0147 yadP 0.94 1.14 0.75 1.09 0.87 1.09 0.94 1.02 "orf, hypothetical protein" b0148 hrpB 0.95 1.01 1.02 1.04 0.87 0.98 0.98 "helicase, ATP-dependent" b0149 mrcB 1.61 1.15 1.08 1.01 0.92 1.38 1.00 peptidoglycan synthetase; penicillin-binding protein 1B b0150 fhuA 0.94 0.99 0.64 0.48 0.70 0.46 0.86 0.55 "outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80" b0151 fhuC 0.85 0.89 0.76 0.83 0.87 0.95 0.83 0.88 ATP-binding component of hydroxymate-dependent iron transport b0152 fhuD 1.09 1.00 0.64 0.79 0.93 0.93 0.91 0.88 "hydroxamate-dependent iron uptake, cytoplasmic membrane component" b0153 fhuB 0.93 0.85 0.86 0.99 0.94 0.99 0.88 0.97 "hydroxamate-dependent iron uptake, cytoplasmic membrane component" b0154 hemL 0.82 0.73 0.97 0.93 1.11 0.97 0.84 1.00 glutamate-1-semialdehyde aminotransferase (aminomutase) b0155 yadQ 1.04 1.18 1.06 1.01 1.11 1.04 putative channel transporter b0156 yadR 1.11 0.81 1.92 1.02 1.00 0.86 1.28 0.96 "orf, hypothetical protein" b0157 yadS 1.08 1.17 1.22 1.05 0.92 0.98 1.16 0.98 "orf, hypothetical protein" b0158 yadT 1.02 0.82 0.77 1.05 0.92 1.09 0.87 1.02 "orf, hypothetical protein" b0159 pfs 0.70 1.07 0.92 0.70 1.00 "orf, hypothetical protein" b0160 dgt 1.09 1.41 0.91 1.21 0.93 1.22 1.14 1.12 deoxyguanosine triphosphate triphosphohydrolase b0161 htrA 0.87 1.00 0.58 1.04 1.30 1.10 0.82 1.15 periplasmic serine protease Do; heat shock protein HtrA b0162 yaeG 1.08 1.00 1.04 1.17 1.04 1.18 1.04 1.13 "orf, hypothetical protein" b0163 yaeH 1.63 2.09 1.33 1.25 1.12 1.32 1.68 1.23 putative structural protein b0164 yaeI 1.05 1.16 0.93 1.07 0.98 1.14 1.05 1.06 "orf, hypothetical protein" b0165 b0165 0.84 1.11 0.98 0.97 0.69 0.98 0.88 "orf, hypothetical protein" b0166 dapD 1.06 1.30 0.73 0.87 1.22 1.18 0.94 "2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase" b0167 glnD 1.30 1.52 1.28 1.44 1.29 1.36 1.37 1.36 protein PII; uridylyltransferase acts on regulator of glnA b0168 map 0.79 0.63 0.88 0.75 0.92 0.83 0.77 0.83 methionine aminopeptidase b0169 rpsB 0.48 0.48 0.81 0.77 0.51 0.62 0.59 0.63 30S ribosomal subunit protein S2 b0170 tsf 0.58 0.47 0.81 0.67 0.72 0.69 0.62 0.69 protein chain elongation factor EF-Ts b0171 pyrH 0.53 0.75 0.96 0.97 0.78 0.64 0.90 uridylate kinase b0172 frr 0.93 0.88 1.20 0.92 1.01 1.33 1.00 1.09 ribosome releasing factor b0173 yaeM 1.14 0.91 0.92 1.01 1.05 1.16 0.99 1.07 putative ATP-binding component of a transport system b0174 yaeS 0.94 0.81 1.12 0.67 0.86 0.75 0.96 0.76 "orf, hypothetical protein" b0175 cdsA 0.89 0.99 1.15 0.80 1.13 0.90 1.01 0.94 CDP-diglyceride synthetase b0176 yaeL 0.98 0.80 1.30 0.78 0.93 0.87 1.03 0.86 "orf, hypothetical protein" b0177 yaeT 0.73 0.70 0.75 0.81 1.03 0.77 0.73 0.87 "orf, hypothetical protein" b0178 hlpA 0.86 0.79 0.82 0.86 1.20 1.25 0.82 1.10 "histone-like protein, located in outer membrane or nucleoid" b0179 lpxD 0.85 0.70 0.90 0.84 0.92 0.94 0.82 0.90 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; third step of endotoxin (lipidA) synthesis b0180 fabZ 0.72 0.44 0.62 0.77 0.74 0.76 0.59 0.76 (3R)-hydroxymyristol acyl carrier protein dehydratase b0181 lpxA 0.75 0.47 0.75 0.78 0.85 0.86 0.66 0.83 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis b0182 lpxB 0.88 0.65 0.92 0.94 0.96 0.87 0.82 0.92 "tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step" b0183 rnhB 0.82 0.73 0.73 0.93 0.85 1.02 0.76 0.93 "RNAse HII, degrades RNA of DNA-RNA hybrids" b0184 dnaE 0.80 0.92 0.79 0.88 0.97 0.91 0.84 0.92 "DNA polymerase III, alpha subunit" b0185 accA 0.74 0.69 0.88 0.80 0.88 0.86 0.77 0.85 "acetylCoA carboxylase, carboxytransferase component, alpha subunit" b0186 ldcC 1.04 1.17 0.91 1.05 1.01 1.07 1.04 1.04 "lysine decarboxylase 2, constitutive" b0187 yaeR 1.03 1.21 1.11 1.08 0.93 0.96 1.12 0.99 "orf, hypothetical protein" b0188 mesJ 1.02 1.28 0.86 1.20 1.02 1.20 1.05 1.14 cell cycle protein b0189 yaeO 1.16 1.25 1.04 0.95 0.93 1.12 1.15 1.00 "orf, hypothetical protein" b0190 yaeQ 0.91 1.12 1.11 0.89 0.98 1.03 1.05 0.97 "orf, hypothetical protein" b0191 yaeJ 0.99 0.99 1.20 1.02 1.16 1.10 1.06 1.09 "orf, hypothetical protein" b0192 cutF 1.14 1.17 1.12 1.18 0.97 1.04 1.14 1.06 copper homeostasis protein (lipoprotein) b0193 yaeF 0.95 0.91 1.15 1.05 1.05 1.01 1.00 1.04 "orf, hypothetical protein" b0194 proS 0.72 0.85 0.81 0.84 0.72 0.92 0.79 0.83 proline tRNA synthetase b0195 yaeB 1.05 1.11 0.93 0.96 0.99 0.99 1.03 0.98 "orf, hypothetical protein" b0196 rcsF 0.99 0.72 1.23 1.08 1.19 1.11 0.98 1.13 regulator in colanic acid synthesis; interacts with RcsB b0197 yaeC 0.73 0.58 1.59 0.71 0.96 0.76 0.97 0.81 putative lipoprotein b0198 yaeE 0.97 0.86 1.06 0.77 0.83 0.96 0.96 0.85 putative transport system permease protein b0199 abc 0.91 0.70 1.27 0.69 0.85 0.95 0.96 0.83 ATP-binding component of a transporter b0200 yaeD 0.99 1.17 1.18 1.02 1.00 1.05 1.11 1.02 putative phosphatase b0207 yafB 0.96 0.96 1.39 0.94 1.00 1.03 1.10 0.99 putative aldose reductase (EC 1.1.1.21) b0208 yafC 1.08 0.91 1.05 1.25 1.17 0.99 1.16 putative transcriptional regulator LYSR-type b0209 yafD 0.75 0.82 1.08 0.88 1.14 1.02 0.88 1.01 "orf, hypothetical protein" b0210 yafE 1.03 1.01 0.85 1.08 1.04 1.09 0.96 1.07 putative biotin synthesis protein b0211 dniR 0.64 0.38 0.89 0.60 0.72 0.78 0.64 0.70 transcriptional regulator for nitrite reductase (cytochrome c552) b0212 gloB 0.97 0.91 0.92 1.00 0.98 1.01 0.93 1.00 probable hydroxyacylglutathione hydrolase b0213 yafS 1.06 1.18 1.10 1.01 1.08 1.09 1.11 1.06 "orf, hypothetical protein" b0214 rnhA 1.09 1.02 1.04 0.89 1.12 1.06 1.02 "RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication" b0215 dnaQ 1.06 0.92 1.52 1.00 1.17 1.04 1.17 1.07 "DNA polymerase III, epsilon subunit" b0217 yafT 0.95 1.12 1.18 0.92 0.98 1.04 1.03 putative aminopeptidase b0218 yafU 1.01 1.16 0.91 0.98 0.99 0.94 1.03 0.97 "orf, hypothetical protein" b0219 yafV 0.99 1.16 1.11 1.13 1.01 0.97 1.09 1.04 putative EC 3.5. amidase-type enzyme b0220 ykfE 1.74 3.56 2.44 1.31 1.38 1.28 2.58 1.32 "orf, hypothetical protein" b0221 yafH 1.02 1.08 1.10 1.23 1.23 1.14 1.07 1.20 putative acyl-CoA dehydrogenase (EC 1.3.99.-) b0222 gmhA 0.99 0.79 0.88 0.93 0.98 1.05 0.89 0.99 phosphoheptose isomerase b0223 yafJ 0.93 1.04 0.98 1.19 1.04 0.99 1.07 putative amidotransferase b0224 yafK 1.05 1.64 1.04 1.28 1.19 1.34 1.17 "orf, hypothetical protein" b0225 yafQ 0.91 1.07 1.49 0.96 0.97 0.95 1.16 0.96 "orf, hypothetical protein" b0226 dinJ 0.77 0.99 0.94 0.97 0.77 0.97 damage-inducible protein J b0227 yafL 1.22 1.04 1.22 0.97 1.01 1.12 1.16 1.03 putative lipoprotein b0228 yafM 1.02 1.11 1.05 1.06 0.99 0.94 1.06 1.00 "orf, hypothetical protein" b0229 fhiA 0.97 0.95 1.19 1.11 1.01 1.06 1.04 1.06 flagellar biosynthesis b0230 mbhA 0.95 0.84 1.09 1.09 0.86 1.12 0.96 1.02 putative motility protein b0231 dinP 0.99 1.31 1.01 0.96 1.08 1.06 1.10 1.03 damage-inducible protein P; putative tRNA synthetase b0232 yafN 0.90 1.18 1.23 0.98 0.92 0.89 1.10 0.93 "orf, hypothetical protein" b0233 yafO 1.11 1.14 1.47 0.82 0.84 0.96 1.24 0.87 "orf, hypothetical protein" b0234 yafP 0.93 0.99 1.03 0.99 0.82 0.89 0.98 0.90 "orf, hypothetical protein" b0235 b0235 0.96 1.16 0.85 1.01 1.02 0.98 0.99 1.00 "orf, hypothetical protein" b0236 prfH 0.86 0.94 1.06 1.05 1.00 1.00 0.95 1.02 probable peptide chain release factor b0237 pepD 0.87 0.89 0.60 1.13 1.09 0.95 0.79 1.06 aminoacyl-histidine dipeptidase (peptidase D) b0238 gpt 0.84 0.97 1.23 0.78 1.02 0.90 1.01 0.90 guanine-hypoxanthine phosphoribosyltransferase b0239 yafA 0.95 1.00 0.82 1.07 1.03 1.02 0.92 1.04 "orf, hypothetical protein" b0240 crl 0.82 0.57 0.93 0.74 1.10 1.20 0.77 1.01 transcriptional regulator of cryptic csgA gene for curli surface fibers b0241 phoE 1.06 0.87 0.72 0.82 0.94 0.96 0.83 "outer membrane pore protein E (E,Ic,NmpAB)" b0242 proB 0.88 1.01 1.00 0.96 0.89 1.01 0.96 0.95 gamma-glutamate kinase b0243 proA 1.04 1.12 1.25 1.22 1.07 1.26 1.14 1.18 gamma-glutamylphosphate reductase b0245 b0245 1.04 1.00 0.99 0.94 1.06 1.02 1.00 "orf, hypothetical protein" b0246 yafW 1.01 1.15 0.92 1.01 0.89 0.94 1.03 0.95 "orf, hypothetical protein" b0247 ykfG 0.99 1.05 0.96 1.12 0.93 0.93 1.00 0.99 putative DNA repair protein b0248 yafX 1.06 1.18 1.01 1.08 1.01 1.06 1.08 1.05 "orf, hypothetical protein" b0249 ykfF 0.99 0.85 0.92 1.15 0.90 0.95 0.92 1.00 "orf, hypothetical protein" b0250 ykfB 1.05 1.23 1.30 1.01 0.97 0.98 1.19 0.99 "orf, hypothetical protein" b0251 yafY 1.08 1.30 1.08 1.15 0.91 1.10 1.15 1.05 "orf, hypothetical protein" b0252 yafZ 1.18 1.07 1.18 1.04 0.99 1.09 1.14 1.04 "orf, hypothetical protein" b0253 ykfA 1.17 1.23 1.01 1.03 0.95 1.20 1.00 putative GTP-binding protein b0254 perR 0.99 0.99 1.27 1.02 1.10 0.96 1.08 1.03 putative transcriptional regulator LYSR-type b0255 yi91a 0.92 1.23 0.91 0.88 0.88 0.99 1.02 0.92 "IS911 hypothetical protein, variant (IS911A)" b0256 tra8_1 0.94 1.14 0.97 0.99 0.90 1.03 1.02 0.97 IS30 transposase b0257 b0257 0.97 1.13 1.03 1.09 1.05 1.14 1.04 1.09 putative transposase b0258 ykfC 1.32 1.18 1.04 1.31 1.06 1.12 1.18 1.16 "orf, hypothetical protein" b0259 trs5_1 0.72 0.65 0.78 1.09 0.86 1.02 0.72 0.99 IS5 transposase b0260 ykfD 1.15 0.90 1.22 1.02 0.99 0.83 1.09 0.95 putative amino acid/amine transport protein b0261 yagD 0.90 1.08 1.12 1.00 0.96 1.00 1.03 0.99 putative enzyme b0262 afuC 1.37 0.99 0.95 0.91 0.96 1.18 0.94 putative ATP-binding component of a transport system b0263 b0263 1.08 0.91 1.08 0.93 0.91 0.99 0.97 putative transport system permease protein b0264 insB_2 0.98 0.95 1.06 1.13 0.92 1.11 1.00 1.05 IS1 protein InsB b0265 insA_2 0.93 0.78 1.02 1.07 1.01 0.99 0.91 1.02 IS1 protein InsA b0266 yagB 0.99 1.08 1.16 1.11 0.90 0.95 1.08 0.99 "orf, hypothetical protein" b0267 yagA 1.16 1.22 1.18 0.99 1.02 1.13 1.19 1.05 "orf, hypothetical protein" b0268 yagE 1.08 0.84 0.95 0.94 0.90 0.96 0.93 putative lyase/synthase b0269 yagF 1.12 3.24 1.19 0.80 1.02 2.18 1.00 putative dehydratase b0270 yagG 1.12 1.05 0.88 0.99 1.01 1.02 1.00 putative permease b0271 yagH 0.85 1.74 1.02 0.87 0.87 1.30 0.92 putative beta-xylosidase (EC 3.2.1.37) b0272 yagI 1.05 0.77 0.94 1.05 0.97 1.16 0.92 1.06 putative regulator b0273 argF 0.51 0.40 1.69 1.05 0.88 1.01 0.87 0.98 "ornithine carbamoyltransferase 2, chain F" b0274 insB_3 0.95 0.95 0.97 1.21 0.97 1.08 0.96 1.09 IS1 protein InsB b0275 insA_3 0.91 0.92 0.88 1.19 0.94 1.00 0.90 1.04 IS1 protein InsA b0276 yagJ 1.11 1.23 1.96 1.08 1.09 1.09 1.43 1.09 "orf, hypothetical protein" b0277 yagK 1.05 1.30 1.49 0.97 0.97 0.96 1.28 0.97 "orf, hypothetical protein" b0278 yagL 0.99 1.04 1.16 1.00 1.24 0.85 1.06 1.03 DNA-binding protein b0279 yagM 0.89 1.16 1.12 0.98 0.89 0.93 1.06 0.93 "orf, hypothetical protein" b0280 yagN 1.04 1.40 1.89 0.99 1.07 1.03 1.44 1.03 "orf, hypothetical protein" b0281 intF 0.92 0.82 0.78 1.16 0.92 1.14 0.84 1.07 putative phage integrase b0282 yagP 0.95 1.26 1.05 1.16 0.97 1.01 1.09 1.05 putative transcriptional regulator LYSR-type b0283 yagQ 1.17 1.36 1.00 0.97 1.08 1.27 1.02 "orf, hypothetical protein" b0284 yagR 1.26 1.24 1.33 1.12 1.14 1.21 1.28 1.16 "orf, hypothetical protein" b0285 yagS 1.22 1.31 1.09 1.09 1.16 1.19 1.21 1.15 "orf, hypothetical protein" b0286 yagT 1.30 1.11 1.09 1.08 1.27 1.21 1.15 putative xanthine dehydrogenase (EC 1.1.1.20) b0287 yagU 0.92 0.69 0.96 1.01 1.07 1.10 0.86 1.06 "orf, hypothetical protein" b0288 ykgJ 1.06 1.28 1.03 0.95 1.03 1.02 1.12 1.00 putative ferredoxin b0289 yagV 1.07 1.18 0.97 0.90 1.35 1.08 1.07 1.11 "orf, hypothetical protein" b0290 yagW 1.32 1.00 1.41 0.78 1.01 0.94 1.24 0.91 putative receptor b0291 yagX 1.02 0.53 1.01 0.60 1.02 0.71 putative enzyme b0292 yagY 1.35 1.11 0.51 0.89 0.53 1.23 0.64 "orf, hypothetical protein" b0293 yagZ 0.84 1.02 0.84 0.29 0.75 0.41 0.90 0.48 "orf, hypothetical protein" b0294 ykgK 1.11 1.01 0.84 0.37 0.93 0.55 0.99 0.62 putative regulator b0295 ykgL 1.20 1.31 0.63 0.76 0.94 0.59 1.05 0.76 "orf, hypothetical protein" b0296 ykgM 0.91 1.08 0.49 0.88 0.99 0.99 0.83 0.95 putative ribosomal protein b0297 eaeH 1.06 1.03 1.00 0.82 1.04 1.05 0.95 "attaching and effacing protein, pathogenesis factor" b0298 b0298 1.00 1.21 1.00 1.07 1.00 0.94 1.07 1.00 putative factor b0299 tra5_5 0.99 0.80 1.22 1.21 0.92 1.12 1.00 1.08 IS3 putative transposase b0300 ykgA 1.24 1.33 1.35 0.99 1.12 1.09 1.31 1.07 putative ARAC-type regulatory protein b0301 ykgB 1.02 1.05 1.14 0.91 0.94 0.97 1.07 0.94 "orf, hypothetical protein" b0302 b0302 1.41 0.66 0.99 0.98 0.87 0.71 1.02 0.85 "orf, hypothetical protein" b0303 ykgI 1.13 0.84 0.85 0.91 0.90 0.99 0.89 "orf, hypothetical protein" b0304 ykgC 1.05 1.28 1.09 1.06 1.06 1.00 1.14 1.04 putative oxidoreductase b0305 ykgD 0.94 1.35 0.81 0.96 0.96 0.94 1.03 0.95 putative ARAC-type regulatory protein b0306 ykgE 1.02 0.94 0.80 0.96 0.88 1.78 0.92 1.21 putative dehydrogenase subunit b0307 ykgF 1.04 1.13 1.15 1.04 0.98 1.11 1.11 1.04 "orf, hypothetical protein" b0308 ykgG 1.16 0.97 1.03 1.09 1.00 1.27 1.05 1.12 putative transporter b0309 b0309 0.88 1.46 1.04 1.09 0.92 0.98 1.13 1.00 "orf, hypothetical protein" b0310 ykgH 1.06 1.26 0.93 0.94 0.91 1.09 1.08 0.98 "orf, hypothetical protein" b0311 betA 1.06 0.91 0.63 1.07 1.06 0.99 0.87 1.04 "choline dehydrogenase, a flavoprotein" b0312 betB 0.82 0.60 1.12 1.05 1.07 0.71 1.08 NAD+-dependent betaine aldehyde dehydrogenase b0313 betI 0.80 0.82 1.33 0.96 0.81 1.15 probably transcriptional repressor of bet genes b0314 betT 0.91 0.97 1.04 0.86 0.95 0.94 0.95 high-affinity choline transport b0315 yahA 1.05 0.75 1.19 0.51 0.69 0.54 1.00 0.58 "orf, hypothetical protein" b0316 yahB 1.07 1.57 1.33 1.09 1.06 1.12 1.32 1.09 putative transcriptional regulator LYSR-type b0317 yahC 1.10 1.61 1.01 1.01 1.05 1.12 1.24 1.06 "orf, hypothetical protein" b0318 yahD 1.11 1.14 0.92 1.16 0.91 1.14 1.06 1.07 putative transcription factor b0319 yahE 1.01 1.36 0.78 1.08 1.04 1.06 1.05 1.06 "orf, hypothetical protein" b0320 yahF 1.09 1.09 1.05 0.98 1.07 1.09 1.08 1.05 putative oxidoreductase subunit b0321 yahG 1.05 1.29 1.27 0.98 0.99 1.02 1.20 1.00 "orf, hypothetical protein" b0322 yahH 1.01 0.93 0.64 0.92 1.01 0.83 "orf, hypothetical protein" b0323 yahI 1.11 1.06 1.19 1.07 0.92 1.00 1.12 1.00 putative kinase (EC 2.7.2.2). b0324 yahJ 3.07 1.07 0.91 1.28 0.91 0.66 1.68 0.95 putative deaminase b0325 yahK 1.39 1.40 1.39 1.77 1.44 1.60 1.39 1.60 putative oxidoreductase b0326 yahL 0.89 1.43 0.91 1.00 0.84 0.93 1.08 0.92 "orf, hypothetical protein" b0327 yahM 1.05 1.05 1.33 1.03 0.88 1.01 1.14 0.97 "orf, hypothetical protein" b0328 yahN 1.11 0.96 1.01 0.84 0.95 1.04 0.93 putative cytochrome subunit of dehydrogenase b0329 yahO 3.63 3.67 1.45 2.10 1.57 2.13 2.92 1.93 "orf, hypothetical protein" b0330 prpR 1.13 1.15 1.20 1.22 0.92 1.18 1.16 1.11 regulator for prp operon b0331 prpB 1.48 1.15 1.05 1.07 1.07 1.31 1.06 putative phosphonomutase 2 b0332 b0332 1.06 0.89 1.03 0.86 0.96 0.98 0.95 "orf, hypothetical protein" b0333 prpC 1.19 1.16 1.01 1.02 0.91 1.07 1.12 1.00 putative citrate synthase; propionate metabolism? b0334 prpD 1.02 0.92 0.88 1.03 0.85 0.94 0.94 0.94 "orf, hypothetical protein" b0335 prpE 1.16 1.13 0.90 0.88 0.98 1.15 0.92 putative propionyl-CoA synthetase b0336 codB 0.74 0.85 4.55 1.24 1.17 1.22 2.05 1.21 cytosine permease/transport b0337 codA 0.91 0.92 4.00 1.19 1.28 1.16 1.94 1.21 cytosine deaminase b0338 cynR 1.48 1.12 1.03 0.94 1.09 1.05 1.21 1.03 cyn operon positive regulator b0339 cynT 1.39 0.88 1.01 0.97 0.87 1.13 0.95 carbonic anhydrase b0340 cynS 0.92 1.31 1.08 1.11 0.94 1.21 1.10 1.09 "cyanate aminohydrolase, cyanase" b0341 cynX 1.14 1.44 1.14 1.03 0.92 1.07 1.24 1.01 cyanate transport b0342 lacA 1.02 1.12 1.23 1.12 0.92 0.86 1.12 0.97 thiogalactoside acetyltransferase b0343 lacY 1.20 1.01 1.06 1.00 1.09 1.11 1.05 galactoside permease (M protein) b0344 lacZ 1.16 1.16 1.14 0.98 1.04 1.24 1.15 1.09 beta-D-galactosidase b0345 lacI 1.13 1.02 0.84 1.09 1.09 1.02 1.00 1.07 transcriptional repressor of the lac operon b0346 mhpR 0.99 0.86 0.76 1.18 1.04 1.17 0.87 1.13 transcriptional regulator for mhp operon b0347 mhpA 0.97 1.08 0.98 0.98 0.87 0.99 1.01 0.95 3-(3-hydroxyphenyl)propionate hydroxylase b0348 mhpB 1.08 1.21 1.01 1.07 0.85 1.11 1.10 1.01 "2,3-dihydroxyphenylpropionate 1,2-dioxygenase" b0349 mhpC 1.06 1.21 1.25 1.05 1.02 1.05 1.17 1.04 "2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase" b0350 mhpD 1.18 1.38 0.92 1.07 0.92 1.05 1.16 1.01 2-keto-4-pentenoate hydratase b0351 mhpF 1.03 1.35 0.99 1.02 1.03 1.12 1.12 1.06 acetaldehyde dehydrogenase b0352 mhpE 0.97 0.75 1.18 1.05 0.87 1.04 0.97 0.99 4-hydroxy-2-ketovalerate aldolase b0353 mhpT 1.15 1.07 1.11 1.15 0.94 1.29 1.11 1.13 putative transport protein b0354 yaiL 1.06 1.04 1.96 0.89 0.93 1.06 1.35 0.96 nucleoprotein/polynucleotide-associated enzyme b0355 yaiM 0.93 1.12 1.12 1.14 1.00 1.08 1.06 1.07 putative esterase (EC 3.1.1.1) b0356 adhC 0.96 0.89 0.61 0.87 0.89 0.96 0.82 0.91 "alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent" b0357 yaiN 0.90 0.87 0.64 0.97 0.93 0.99 0.80 0.96 putative alpha helix chain b0358 yaiO 0.93 1.05 1.05 1.04 1.05 1.23 1.01 1.11 "orf, hypothetical protein" b0359 b0359 0.93 1.28 1.09 1.09 0.87 0.98 1.10 0.98 putative transferase b0360 yi21_1 1.18 1.23 1.02 0.92 1.02 1.21 0.99 IS2 hypothetical protein b0361 yi22_1 1.06 0.89 0.87 1.02 0.96 0.97 0.94 0.98 IS2 hypothetical protein b0362 b0362 1.01 1.06 1.11 1.06 0.88 1.00 1.06 0.98 "orf, hypothetical protein" b0363 yaiP 1.12 1.26 1.03 0.98 1.00 0.99 1.14 0.99 polysaccharide metabolism b0364 yaiS 1.02 1.58 0.90 0.97 0.93 0.94 1.17 0.95 "orf, hypothetical protein" b0365 tauA 0.99 1.14 0.89 1.06 1.07 1.11 1.01 1.08 taurine transport system periplasmic protein b0366 tauB 1.36 1.04 1.11 1.00 1.09 1.20 1.07 taurine ATP-binding component of a transport system b0367 tauC 1.04 1.28 0.92 1.17 1.07 1.08 1.08 1.11 taurine transport system permease protein b0368 tauD 1.05 1.41 0.95 1.03 1.18 1.02 1.14 1.08 "taurine dioxygenase, 2-oxoglutarate-dependent" b0369 hemB 0.72 0.86 1.06 0.86 0.90 0.98 0.88 0.91 5-aminolevulinate dehydratase = porphobilinogen synthase b0370 b0370 1.00 1.36 1.15 0.98 0.91 1.01 1.17 0.97 "orf, hypothetical protein" b0371 yaiT 1.01 1.57 1.75 0.94 1.26 1.13 1.44 1.11 "orf, hypothetical protein" b0372 tra5_1 0.88 0.96 1.56 0.97 0.97 0.99 1.13 0.98 IS3 putative transposase b0373 b0373 0.86 1.32 0.94 0.88 0.94 1.09 0.92 putative factor b0374 yaiU 0.98 1.40 1.39 1.03 0.96 1.11 1.26 1.03 putative flagellin structural protein b0375 yaiV 0.91 1.13 1.60 0.84 0.91 1.19 "orf, hypothetical protein" b0376 yaiH 1.14 1.01 1.12 1.03 1.21 1.14 1.09 1.13 putative enzyme b0377 sbmA 1.12 1.23 1.02 1.02 1.11 1.18 1.05 "sensitivity to microcin B17, possibly envelop protein" b0378 yaiW 1.15 1.39 1.10 0.91 0.99 1.27 1.00 "orf, hypothetical protein" b0379 b0379 1.12 1.01 0.90 0.88 0.91 1.02 1.01 0.94 "orf, hypothetical protein" b0380 b0380 0.93 0.97 1.10 0.93 0.91 0.95 1.00 0.93 "orf, hypothetical protein" b0381 ddlA 0.98 1.26 1.41 1.10 1.32 1.03 1.22 1.15 D-alanine-D-alanine ligase A b0382 yaiB 1.28 1.54 1.85 1.16 1.06 1.26 1.56 1.16 "orf, hypothetical protein" b0383 phoA 1.06 1.40 1.47 1.32 1.12 1.26 1.31 1.23 alkaline phosphatase b0384 psiF 1.14 1.88 1.92 1.44 1.25 1.65 1.35 induced by phosphate starvation b0385 yaiC 1.06 0.91 1.16 0.91 0.83 1.05 1.04 0.93 "orf, hypothetical protein" b0386 proC 0.88 1.18 1.32 0.99 0.82 1.08 1.13 0.96 pyrroline-5-carboxylate reductase b0387 yaiI 0.97 0.83 0.98 0.94 1.04 1.04 0.93 1.01 "orf, hypothetical protein" b0388 aroL 0.70 0.60 0.68 0.86 0.99 0.84 0.66 0.90 shikimate kinase II b0389 yaiA 0.88 1.02 1.32 1.09 0.94 0.53 1.07 0.85 "orf, hypothetical protein" b0390 aroM 1.23 1.49 0.95 1.00 1.09 1.36 1.01 "protein of aro operon, regulated by aroR" b0391 yaiE 1.04 1.07 1.08 1.05 1.11 1.09 1.06 1.08 "orf, hypothetical protein" b0392 b0392 0.97 1.05 1.06 1.07 0.91 0.96 1.03 0.98 "orf, hypothetical protein" b0393 yaiD 0.94 0.88 1.43 0.81 0.97 0.96 1.08 0.91 "orf, hypothetical protein" b0394 yajF 1.04 1.13 1.19 1.06 1.06 1.13 1.12 1.08 possible NAGC-like transcriptional regulator b0395 b0395 0.92 1.11 1.10 0.95 1.15 1.00 1.04 1.03 "orf, hypothetical protein" b0396 araJ 1.08 1.52 0.96 1.02 1.11 1.30 1.03 involved in either transport or processing of arabinose polymers b0397 sbcC 0.90 0.98 1.00 1.11 0.94 0.94 1.02 ATP-dependent dsDNA exonuclease b0398 sbcD 0.98 1.06 0.92 0.97 1.06 1.03 0.99 1.02 ATP-dependent dsDNA exonuclease b0399 phoB 1.37 0.97 1.11 1.11 1.03 1.14 1.15 1.09 "positive response regulator for pho regulon, sensor is PhoR (or CreC)" b0400 phoR 1.14 0.93 1.16 1.00 1.14 1.10 1.08 1.08 positive and negative sensor protein for pho regulon b0401 brnQ 0.89 1.13 1.09 0.92 0.70 1.02 1.04 0.88 branched chain amino acid transport system II carrier protein b0402 proY 1.02 1.14 1.02 1.03 1.00 1.03 1.06 1.02 proline permease transport protein b0403 malZ 0.96 1.02 0.85 1.04 1.11 1.14 0.94 1.10 maltodextrin glucosidase b0404 yajB 1.35 1.10 0.96 0.98 1.17 1.22 1.04 putative glycoprotein b0405 queA 0.79 0.75 0.97 0.68 0.99 0.80 0.84 0.82 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase b0406 tgt 0.81 0.62 1.45 0.63 0.89 0.72 0.96 0.75 tRNA-guanine transglycosylase b0407 yajC 0.93 0.61 0.98 0.55 0.87 0.88 0.84 0.77 "orf, hypothetical protein" b0408 secD 0.77 0.58 0.96 0.70 1.09 0.71 0.77 0.83 "protein secretion; membrane protein, part of the channel" b0409 secF 0.85 1.02 1.14 0.78 0.85 0.92 1.00 0.85 "protein secretion, membrane protein" b0410 yajD 0.91 1.03 1.25 0.98 0.94 0.94 1.06 0.95 "orf, hypothetical protein" b0411 tsx 0.59 0.61 0.97 0.67 0.72 0.67 nucleoside channel; receptor of phage T6 and colicin K b0412 yajI 1.18 1.19 1.32 0.93 1.07 1.07 1.23 1.02 "orf, hypothetical protein" b0413 ybaD 0.91 0.93 0.87 0.99 0.88 0.84 0.90 0.90 "orf, hypothetical protein" b0414 ribD 0.81 0.82 0.76 1.09 1.11 0.90 0.80 1.03 bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis b0415 ribH 0.82 0.69 0.93 0.93 0.94 0.76 0.93 "riboflavin synthase, beta chain" b0416 nusB 0.73 0.64 0.84 0.84 0.98 0.80 0.74 0.87 transcription termination; L factor b0417 thiL 0.93 1.15 0.76 1.06 1.06 1.13 0.95 1.08 thiamin-monophosphate kinase b0418 pgpA 1.13 0.91 1.32 0.96 0.87 0.90 1.12 0.91 phosphatidylglycerophosphatase b0419 yajO 1.06 1.37 1.11 1.35 1.14 1.14 1.18 1.21 putative NAD(P)H-dependent xylose reductase b0420 dxs 0.94 0.73 1.00 0.72 1.05 0.80 0.89 0.86 1-deoxyxylulose-5-phosphate synthase; flavoprotein b0421 ispA 0.79 0.84 0.67 0.81 0.81 0.85 0.77 0.82 geranyltranstransferase (farnesyldiphosphate synthase) b0422 xseB 0.96 0.78 1.12 0.81 0.96 0.98 0.95 0.92 "exonuclease VII, small subunit" b0423 yajK 1.06 0.93 0.83 1.00 0.77 1.00 0.87 putative oxidoreductase b0424 thiJ 1.06 0.90 1.08 0.97 1.07 1.04 1.01 1.03 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis b0425 apbA 0.54 1.06 0.95 0.98 0.88 0.80 0.94 "involved in thiamin biosynthesis, alternative pyrimidine biosynthesis" b0426 yajQ 0.91 0.74 2.27 0.88 0.96 1.13 1.31 0.99 "orf, hypothetical protein" b0427 yajR 1.07 1.16 0.90 0.96 1.07 1.12 0.98 putative transport protein b0428 cyoE 0.69 0.82 0.67 0.81 0.76 0.75 0.75 protoheme IX farnesyltransferase (haeme O biosynthesis) b0429 cyoD 0.68 0.67 1.01 0.74 0.83 0.83 0.79 0.80 cytochrome o ubiquinol oxidase subunit IV b0430 cyoC 0.46 0.59 0.70 0.72 0.89 0.75 0.58 0.79 cytochrome o ubiquinol oxidase subunit III b0431 cyoB 0.40 0.40 0.50 0.70 0.86 0.64 0.43 0.73 cytochrome o ubiquinol oxidase subunit I b0432 cyoA 0.49 0.40 0.50 0.82 0.79 0.72 0.46 0.78 cytochrome o ubiquinol oxidase subunit II b0433 ampG 0.89 0.86 0.98 0.81 0.93 0.89 0.91 0.88 regulates beta-lactamase synthesis b0434 yajG 0.69 0.65 1.05 0.79 1.00 0.79 0.80 0.86 putative polymerase/proteinase b0435 bolA 2.00 2.06 2.22 1.52 1.47 1.61 2.09 1.53 possible regulator of murein genes b0436 tig 0.55 0.93 0.53 0.66 0.79 0.74 0.66 trigger factor; a molecular chaperone involved in cell division b0437 clpP 0.92 0.74 0.93 1.02 1.11 1.10 0.86 1.08 "ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5" b0438 clpX 1.06 1.06 1.28 1.06 1.28 "ATP-dependent specificity component of clpP serine protease, chaperone" b0439 lon 0.98 0.82 0.93 0.80 0.85 0.91 0.91 0.85 "DNA-binding, ATP-dependent protease La; heat shock K-protein" b0440 hupB 1.15 1.04 1.03 0.54 0.70 1.20 1.07 0.81 "DNA-binding protein HU-beta, NS1 (HU-1)" b0441 ybaU 1.10 0.75 0.61 1.12 1.01 0.93 0.91 putative protease maturation protein b0442 ybaV 0.96 1.19 0.97 1.11 0.88 1.04 1.04 1.01 "orf, hypothetical protein" b0443 ybaW 0.96 1.63 2.04 1.12 0.96 1.11 1.54 1.06 "orf, hypothetical protein" b0444 ybaX 0.97 1.15 1.08 1.05 1.18 1.07 1.12 "orf, hypothetical protein" b0445 ybaE 0.99 1.14 1.08 1.05 0.96 1.00 1.07 1.00 "orf, hypothetical protein" b0446 cof 1.07 1.38 1.02 1.12 1.09 1.16 1.11 "orf, hypothetical protein" b0447 ybaO 1.01 1.38 0.89 1.22 1.11 1.19 1.09 1.17 putative LRP-like transcriptional regulator b0448 mdlA 1.04 0.96 1.69 1.06 0.91 1.11 1.23 1.03 ATP-binding component of a transport system b0449 mdlB 1.03 1.10 1.43 0.95 1.10 1.09 1.19 1.05 putative ATP-binding component of a transport system b0450 glnK 7.58 4.77 13.87 5.96 8.45 6.18 9.43 nitrogen regulatory protein P-II 2 b0451 amtB 1.36 3.31 7.69 1.12 0.90 0.90 4.12 0.97 probable ammonium transporter b0452 tesB 1.16 1.38 2.27 1.39 1.13 1.26 1.60 1.26 acyl-CoA thioesterase II b0453 ybaY 1.55 1.43 1.56 1.69 1.63 1.90 1.51 1.74 glycoprotein/polysaccharide metabolism b0454 ybaZ 0.96 1.26 1.41 1.14 0.96 1.00 1.21 1.03 "orf, hypothetical protein" b0456 ybaA 0.99 1.58 1.43 1.18 0.89 1.08 1.33 1.05 "orf, hypothetical protein" b0457 ylaB 1.23 1.30 1.64 1.02 1.27 1.23 1.39 1.17 "orf, hypothetical protein" b0458 ylaC 1.08 0.97 1.47 1.02 0.87 0.91 1.17 0.93 "orf, hypothetical protein" b0459 ylaD 1.09 1.03 1.16 0.92 0.98 0.96 1.09 0.95 putative transferase b0460 hha 1.07 1.69 1.10 0.87 0.95 1.38 0.97 haemolysin expression modulating protein b0461 ybaJ 1.41 1.71 2.56 1.33 1.24 1.29 1.89 1.29 "orf, hypothetical protein" b0462 acrB 0.83 0.88 0.91 0.77 0.89 0.86 0.86 acridine efflux pump b0463 acrA 0.85 0.64 0.93 0.91 0.82 0.75 0.89 acridine efflux pump b0464 acrR 1.02 1.01 1.49 1.03 0.99 1.21 1.17 1.08 acrAB operon repressor b0465 aefA 0.63 0.77 0.92 0.86 0.77 0.70 0.85 putative alpha helix protein b0466 ybaM 1.09 1.08 1.20 0.92 1.04 0.92 1.12 0.96 "orf, hypothetical protein" b0467 priC 0.93 1.10 0.93 0.91 0.89 1.01 0.91 primosomal replication protein N'' b0468 ybaN 0.99 0.76 0.96 0.97 0.94 0.97 0.90 0.96 putative gene 58 b0469 apt 0.76 0.83 1.12 0.83 1.10 0.70 0.90 0.88 adenine phosphoribosyltransferase b0470 dnaX 0.87 0.96 0.85 0.96 1.12 0.92 0.89 1.00 "DNA polymerase III, tau and gamma subunits; DNA elongation factor III" b0471 ybaB 0.77 0.89 0.72 0.98 0.83 0.83 0.84 "orf, hypothetical protein" b0472 recR 0.67 0.69 0.71 0.72 0.74 0.78 0.69 0.75 recombination and repair b0473 htpG 0.69 0.79 0.85 0.93 0.90 0.74 0.89 "chaperone Hsp90, heat shock protein C 62.5" b0474 adk 0.74 0.60 1.59 0.56 0.69 1.03 0.98 0.76 adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity b0475 hemH 0.91 1.40 0.95 0.82 0.97 1.05 1.09 0.95 ferrochelatase: final enzyme of heme biosynthesis b0476 ybaC 1.05 1.54 1.30 1.15 1.01 1.12 1.30 1.09 putative lipase (EC 3.1.1.-) b0477 gsk 0.76 0.67 0.98 0.71 0.81 0.75 0.80 0.76 inosine-guanosine kinase b0478 ybaL 1.11 1.00 1.14 0.97 1.09 1.16 1.08 1.07 putative transport protein b0479 fsr 1.12 1.08 1.22 1.20 1.06 1.21 1.14 1.16 fosmidomycin resistance protein b0480 ushA 1.06 1.20 1.02 0.88 1.00 1.13 0.97 UDP-sugar hydrolase (5'-nucleotidase) b0481 ybaK 1.11 1.20 0.96 0.96 1.00 1.09 1.09 1.02 "orf, hypothetical protein" b0482 ybaP 1.12 0.87 1.11 1.13 0.89 0.92 1.03 0.98 putative ligase b0483 ybaQ 1.24 2.04 0.93 0.96 0.80 1.64 0.90 "orf, hypothetical protein" b0484 ybaR 0.89 0.96 2.70 0.67 0.86 0.86 1.52 0.80 putative ATPase b0485 ybaS 3.27 3.59 3.33 2.15 2.05 1.95 3.40 2.05 putative glutaminase b0486 ybaT 1.07 2.05 3.70 1.60 1.16 1.27 2.27 1.34 putative amino acid/amine transport protein b0487 ybbI 1.18 1.55 2.27 1.38 1.12 1.29 1.67 1.26 putative transcriptional regulator b0488 ybbJ 0.89 1.04 1.56 1.13 0.91 1.16 1.02 "orf, hypothetical protein" b0489 ybbK 1.04 1.25 0.99 1.11 0.90 1.12 1.09 1.04 putative protease b0490 ybbL 1.01 0.91 1.33 1.08 0.83 1.13 1.08 1.01 putative ATP-binding component of a transport system b0491 ybbM 1.01 0.74 0.92 1.02 0.99 1.07 0.89 1.03 putative metal resistance protein b0492 ybbN 0.88 0.83 0.89 1.08 1.00 1.11 0.87 1.06 putative thioredoxin-like protein b0493 ybbO 0.97 0.93 0.72 0.97 0.91 0.95 0.87 0.94 putative oxidoreductase b0494 tesA 1.04 1.28 1.04 1.22 1.08 1.03 1.12 1.11 acyl-CoA thioesterase I; also functions as protease I b0495 ybbA 1.16 1.09 1.03 0.98 1.07 1.12 1.03 putative ATP-binding component of a transport system b0496 ybbP 1.04 1.01 1.06 1.11 1.20 1.30 1.04 1.20 putative oxidoreductase b0497 rhsD 0.97 0.91 1.04 0.91 0.93 0.94 0.96 rhsD protein in rhs element b0498 ybbC 1.08 0.87 0.91 1.08 0.93 0.88 0.95 0.96 "orf, hypothetical protein" b0499 b0499 1.11 1.30 1.37 1.18 1.38 1.11 1.26 1.22 "orf, hypothetical protein" b0500 ybbD 1.03 1.54 0.95 1.14 0.80 0.92 1.17 0.95 "orf, hypothetical protein" b0501 b0501 1.22 1.08 0.84 1.07 1.01 0.91 1.05 1.00 "orf, hypothetical protein" b0502 b0502 0.89 1.12 0.96 1.11 1.00 1.10 0.99 1.07 "orf, hypothetical protein" b0503 ybbB 1.05 1.06 1.04 1.01 0.96 1.16 1.05 1.04 putative capsule anchoring protein b0504 ybbS 1.09 1.19 1.00 1.08 0.92 1.30 1.09 1.10 putative transcriptional regulator LYSR-type b0505 ybbT 0.92 1.35 1.02 1.12 0.88 1.08 1.10 1.03 "orf, hypothetical protein" b0506 ybbU 0.93 0.99 1.05 1.08 0.94 1.16 0.99 1.06 putative regulator b0507 gcl 1.39 1.05 1.02 0.86 1.02 1.22 0.97 glyoxylate carboligase b0508 gip 1.06 1.01 1.01 1.14 1.02 0.94 1.03 1.03 glyoxylate-induced protein b0509 ybbQ 1.00 1.10 1.23 1.14 1.02 1.03 1.11 1.06 putative oxidoreductase b0510 ybbV 1.08 1.13 1.75 0.94 0.81 0.98 1.32 0.91 "orf, hypothetical protein" b0511 ybbW 0.97 1.33 0.93 1.15 1.09 1.10 1.08 1.11 putative transport protein b0512 ybbX 0.96 1.08 0.94 1.13 0.96 1.16 0.99 1.08 putative hydrolase b0513 ybbY 1.09 1.21 0.92 0.94 0.86 1.16 1.07 0.99 putative transport b0514 ybbZ 1.16 1.13 1.28 1.04 0.96 1.00 1.19 1.00 "orf, hypothetical protein" b0515 ylbA 1.21 1.06 0.78 1.00 1.08 1.04 1.02 1.04 "orf, hypothetical protein" b0516 ylbB 1.07 1.21 1.09 0.97 1.02 0.98 1.12 0.99 putative hydantoin utilization protein b0517 ylbC 1.09 1.40 1.16 1.20 0.80 0.97 1.22 0.99 putative malate dehydrogenase (EC 1.1.1.37) b0518 fdrA 1.00 1.21 1.11 1.02 0.92 1.00 1.11 0.98 involved in protein transport; multicopy suppressor of dominant negative ftsH mutants b0519 ylbE 0.95 1.43 0.97 0.96 0.94 0.96 1.12 0.95 "orf, hypothetical protein" b0520 ylbF 1.02 1.08 0.89 1.09 1.04 1.08 1.00 1.07 putative carboxylase b0521 arcC 1.03 1.28 0.94 1.23 0.94 1.11 1.08 1.09 putative carbamate kinase (EC 2.7.2.2) b0522 purK 0.73 0.58 0.71 0.94 1.02 1.00 0.67 0.99 "phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit" b0523 purE 0.81 0.57 0.88 0.91 0.90 0.91 0.75 0.91 "phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit" b0524 ybbF 0.96 0.97 1.15 0.86 0.93 0.96 1.03 0.92 "orf, hypothetical protein" b0525 ppiB 0.79 0.71 1.37 0.74 1.13 0.98 0.96 0.95 peptidyl-prolyl cis-trans isomerase B (rotamase B) b0526 cysS 0.93 1.52 0.98 0.94 0.91 1.22 0.94 cysteine tRNA synthetase b0527 ybcI 1.16 1.22 0.96 0.98 0.83 1.19 0.92 "orf, hypothetical protein" b0528 ybcJ 1.12 1.07 0.98 0.97 0.96 1.08 1.06 1.00 "orf, hypothetical protein" b0529 folD 0.71 0.45 0.87 0.94 0.86 0.74 0.68 0.85 "5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase" b0530 sfmA 1.03 1.45 0.87 1.19 0.97 1.05 1.12 1.07 putative fimbrial-like protein b0531 sfmC 0.97 1.23 0.99 0.97 0.75 0.93 1.06 0.88 putative chaperone b0532 sfmD 1.02 0.74 0.68 0.94 0.99 1.21 0.81 1.05 "putative outer membrane protein, export function" b0533 sfmH 0.95 1.40 1.03 1.13 0.92 1.01 1.13 1.02 involved in fimbrial asembly b0534 sfmF 0.95 1.26 0.97 0.98 0.79 0.95 1.06 0.91 putative fimbrial-like protein b0535 fimZ 0.91 1.30 0.96 1.06 0.85 1.03 1.06 0.98 fimbrial Z protein; probable signal transducer b0537 intD 1.05 0.99 1.56 1.01 0.90 1.01 1.20 0.97 prophage DLP12 integrase b0538 b0538 1.11 0.92 1.52 1.12 0.99 1.07 1.18 1.06 putative sensory transduction regulator b0539 b0539 0.97 0.89 1.19 0.99 0.84 0.94 1.02 0.92 putative exonuclease (EC 3.1.11.3) similar to lambda b0540 b0540 1.24 1.32 0.92 0.86 0.91 1.28 0.90 "orf, hypothetical protein" b0541 tra5_2 0.97 1.35 1.06 0.98 1.02 1.03 1.13 1.01 IS3 putative transposase b0542 b0542 0.91 1.19 0.94 1.25 0.92 1.04 1.01 1.07 "orf, hypothetical protein" b0543 emrE 0.89 1.57 1.06 1.22 0.88 1.02 1.17 1.04 methylviologen resistance b0544 ybcK 0.96 0.99 1.08 1.15 1.05 1.05 1.01 1.08 "orf, hypothetical protein" b0545 ybcL 0.95 1.50 0.93 1.09 0.89 1.02 1.13 1.00 "orf, hypothetical protein" b0546 ybcM 0.96 1.63 2.27 1.13 0.96 1.06 1.62 1.05 putative ARAC-type regulatory protein b0547 ybcN 0.94 1.35 1.23 1.12 0.94 1.03 1.17 1.03 "orf, hypothetical protein" b0548 ninE 0.88 1.15 0.96 1.06 0.86 1.00 1.00 0.97 similar to phage 82 and lambda proteins b0549 ybcO 0.96 1.26 0.89 1.15 1.02 1.11 1.04 1.09 "orf, hypothetical protein" b0550 rus 0.91 1.27 1.02 1.09 0.88 1.07 1.07 1.01 endodeoxyribonuclease RUS (Holliday junction resolvase) b0551 ybcQ 1.09 1.35 0.94 1.02 1.05 1.09 1.13 1.05 "orf, hypothetical protein" b0552 trs5_2 0.77 0.65 0.70 1.12 1.04 1.07 0.71 1.08 IS5 transposase b0553 nmpC 0.33 0.35 0.27 0.27 0.29 0.58 0.32 0.38 outer membrane porin protein; locus of qsr prophage b0554 ybcR 0.86 1.13 0.93 1.00 0.82 0.89 0.97 0.90 "orf, hypothetical protein" b0555 ybcS 1.17 1.28 1.28 0.98 1.05 0.98 1.24 1.00 bacteriophage lambda lysozyme homolog b0556 ybcT 0.77 0.69 0.83 0.87 0.87 0.73 0.86 bacteriophage lambda endopeptidase homolog b0557 ybcU 0.51 0.16 0.31 0.31 0.59 0.63 0.33 0.51 bacteriophage lambda Bor protein homolog b0558 ybcV 0.87 1.43 1.08 1.07 1.06 1.00 1.13 1.04 putative an envelop protein b0559 ybcW 1.15 1.31 0.86 1.07 1.20 0.93 1.11 1.07 "orf, hypothetical protein" b0560 nohB 1.01 1.06 1.03 1.01 0.99 0.92 1.03 0.97 bacteriophage DNA packaging protein b0561 ybcX 0.99 0.84 1.02 1.07 0.90 0.95 0.95 0.97 "orf, hypothetical protein" b0562 ybcY 1.23 1.10 1.01 1.05 0.93 1.16 1.00 "orf, hypothetical protein" b0563 ylcE 0.88 1.94 0.92 1.15 0.98 1.21 1.25 1.11 "orf, hypothetical protein" b0564 appY 1.08 1.23 4.17 1.25 1.08 0.99 2.16 1.11 regulatory protein affecting appA and other genes b0565 ompT 0.41 0.37 0.99 2.28 1.15 1.06 0.59 1.50 "outer membrane protein 3b (a), protease VII" b0566 envY 1.01 1.43 1.64 1.08 1.10 1.20 1.36 1.13 envelope protein; thermoregulation of porin biosynthesis b0567 ybcH 0.98 1.22 1.33 1.15 0.96 1.06 1.18 1.06 "orf, hypothetical protein" b0568 nfrA 0.98 1.33 0.88 1.01 1.02 1.15 1.06 1.06 "bacteriophage N4 receptor, outer membrane protein" b0569 nfrB 1.16 1.26 1.61 1.11 1.05 1.23 1.34 1.13 "bacteriophage N4 receptor, outer membrane protein" b0570 ybcZ 0.96 1.09 1.82 1.08 0.72 1.14 1.29 0.98 putative 2-component sensor protein b0571 ylcA 0.90 0.73 1.39 0.92 0.81 1.08 1.01 0.94 putative 2-component transcriptional regulator b0572 ylcB 0.33 9.09 0.60 0.75 0.74 4.71 0.70 putative resistance protein b0573 ylcC 0.79 0.47 2.33 0.74 0.78 0.83 1.20 0.78 "orf, hypothetical protein" b0574 ylcD 0.79 0.94 0.92 0.94 0.79 0.93 putative resistance protein b0575 ybdE 0.79 1.56 0.87 1.00 0.89 1.18 0.92 putative inner membrane component for iron transport b0576 pheP 1.02 0.96 0.99 0.71 0.96 0.93 0.99 0.87 phenylalanine-specific transport system b0577 ybdG 1.17 0.82 1.09 0.89 0.94 1.05 1.03 0.96 putative transport b0578 nfnB 0.74 1.35 0.96 1.05 0.84 1.05 0.95 oxygen-insensitive NAD(P)H nitroreductase b0579 ybdF 0.94 1.00 1.11 1.06 0.89 1.12 1.02 1.02 "orf, hypothetical protein" b0580 ybdJ 0.97 0.91 1.10 1.02 0.91 1.08 0.99 1.00 "orf, hypothetical protein" b0581 ybdK 1.01 1.06 0.68 1.20 1.01 1.23 0.92 1.15 "orf, hypothetical protein" b0582 yi81_2 1.09 0.89 1.20 1.03 0.92 0.92 1.06 0.96 IS186 hypothetical protein b0583 entD 0.91 1.11 0.38 0.84 0.82 0.83 0.80 0.83 "enterochelin synthetase, component D" b0584 fepA 0.75 0.90 0.06 0.39 0.45 0.47 0.57 0.44 outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D b0585 fes 1.09 0.57 0.34 0.53 1.01 0.72 0.67 0.75 enterochelin esterase b0586 entF 0.99 0.44 0.60 0.82 0.58 0.72 0.67 ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) b0587 fepE 1.06 1.50 0.70 0.98 0.90 0.95 1.09 0.94 ferric enterobactin (enterochelin) transport b0588 fepC 0.86 0.90 0.51 0.82 0.86 0.84 0.76 0.84 ATP-binding component of ferric enterobactin transport b0589 fepG 1.08 1.39 0.75 0.95 1.04 0.93 1.07 0.97 ferric enterobactin transport protein b0590 fepD 1.12 0.88 0.86 1.31 0.99 2.15 0.95 1.48 ferric enterobactin (enterochelin) transport b0591 ybdA 1.02 0.62 1.01 0.82 0.88 0.82 0.90 putative transport b0592 fepB 0.98 0.91 0.45 0.71 0.86 0.71 0.78 0.76 ferric enterobactin (enterochelin) binding protein; periplasmic component b0593 entC 0.79 0.10 0.65 0.71 0.59 0.44 0.65 "isochorismate hydroxymutase 2, enterochelin biosynthesis" b0594 entE 0.98 0.86 0.10 0.52 0.56 0.48 0.65 0.52 "2,3-dihydroxybenzoate-AMP ligase" b0595 entB 0.98 0.10 0.65 0.82 0.75 0.54 0.74 "2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase" b0596 entA 1.02 1.13 0.13 1.04 1.05 0.94 0.76 1.01 "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis" b0597 ybdB 0.91 1.06 0.17 0.94 0.89 1.06 0.71 0.96 "orf, hypothetical protein" b0598 cstA 0.65 0.84 0.70 0.79 0.84 0.98 0.73 0.87 carbon starvation protein b0599 ybdH 0.82 0.75 1.25 0.95 0.73 0.88 0.94 0.85 putative oxidoreductase b0600 ybdL 1.14 1.30 0.97 1.02 1.07 1.22 1.02 putative aminotransferase b0601 ybdM 1.11 1.02 0.93 0.91 1.04 1.03 1.02 0.99 "orf, hypothetical protein" b0602 ybdN 0.96 1.59 1.11 0.93 0.96 0.97 1.22 0.95 "orf, hypothetical protein" b0603 ybdO 0.94 2.06 1.23 1.05 0.73 1.08 1.41 0.95 putative transcriptional regulator LYSR-type b0604 dsbG 0.96 1.48 1.18 1.21 0.93 1.07 1.21 1.07 thiol:disulfide interchange protein b0605 ahpC 1.30 1.52 1.06 1.19 1.55 1.41 1.27 "alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides" b0606 ahpF 1.04 1.02 1.12 1.11 1.27 1.03 1.17 "alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides" b0607 ybdQ 1.15 1.17 1.08 1.10 1.15 1.23 1.13 1.16 "orf, hypothetical protein" b0608 ybdR 1.15 1.33 1.18 1.08 1.07 1.03 1.22 1.06 putative oxidoreductase b0609 b0609 1.14 0.97 0.84 0.85 0.93 1.06 0.87 "orf, hypothetical protein" b0610 rnk 0.96 0.99 1.10 0.78 0.97 0.87 1.02 0.87 regulator of nucleoside diphosphate kinase b0611 rna 0.94 1.33 0.94 1.02 0.95 1.14 0.97 "RNase I, cleaves phosphodiester bond between any two nucleotides" b0612 ybdS 0.89 0.84 1.16 1.02 0.99 0.96 1.01 putative a membrane protein b0613 citG 1.16 0.96 1.09 0.90 1.01 0.99 1.07 0.97 "orf, hypothetical protein" b0614 ybdU 0.92 1.05 1.85 1.03 0.89 0.90 1.27 0.94 "orf, hypothetical protein" b0615 citF 0.89 1.13 1.04 0.91 1.00 0.88 1.02 0.93 citrate lyase alpha chain b0616 citE 1.04 0.87 1.01 1.03 0.91 1.00 0.97 0.98 citrate lyase beta chain (acyl lyase subunit) b0617 citD 0.97 1.24 1.01 1.06 1.08 1.05 1.07 1.06 citrate lyase acyl carrier protein (gamma chain) b0618 citC 0.97 1.08 1.00 1.12 0.92 1.13 1.02 1.06 citrate lyase synthetase (citrate (pro-3S)-lyase ligase b0619 citA 0.98 1.18 0.88 1.05 1.01 1.12 1.01 1.06 putative sensor-type protein b0620 citB 0.95 1.31 1.08 1.11 0.88 1.06 1.11 1.02 sequence similarity to Shigella regulator b0621 dcuC 0.96 1.30 1.08 1.10 1.02 0.98 1.11 1.03 transport of dicarboxylates b0622 crcA 1.77 1.45 1.06 0.92 0.86 1.61 0.95 "orf, hypothetical protein" b0623 cspE 1.13 0.97 0.93 0.71 0.99 1.66 1.01 1.12 cold shock protein b0624 crcB 0.97 1.15 1.12 1.11 0.96 1.15 1.08 1.07 "orf, hypothetical protein" b0625 ybeH 0.98 0.97 0.93 1.23 0.93 1.05 0.96 1.07 "orf, hypothetical protein" b0626 ybeM 1.25 1.27 1.18 1.04 1.14 1.26 1.12 putative amidase b0627 ybeC 1.02 1.77 2.27 1.23 1.10 1.18 1.69 1.17 "orf, hypothetical protein" b0628 lipA 0.79 0.95 1.19 1.17 1.21 1.16 0.98 1.18 "lipoate synthesis, sulfur insertion?" b0629 ybeF 0.97 1.41 1.33 1.02 0.94 1.20 1.24 1.05 putative transcriptional regulator LYSR-type b0630 lipB 0.89 1.29 1.11 0.92 0.87 0.94 1.10 0.91 protein of lipoate biosynthesis b0631 ybeD 0.96 2.65 1.12 0.93 0.96 1.81 1.00 "orf, hypothetical protein" b0632 dacA 0.85 0.59 0.86 0.81 1.08 0.80 0.77 0.90 "D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5" b0633 rlpA 1.02 1.19 0.76 1.06 1.18 1.02 0.99 1.09 a minor lipoprotein b0634 mrdB 0.96 1.05 1.32 0.97 0.97 1.03 1.11 0.99 rod shape-determining membrane protein; sensitivity to radiation and drugs b0635 mrdA 0.83 1.22 0.75 1.09 0.99 1.02 0.94 "cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2" b0636 ybeA 0.79 0.81 0.83 0.94 0.96 0.98 0.81 0.96 "orf, hypothetical protein" b0637 ybeB 0.92 0.79 0.88 1.04 1.00 1.03 0.86 1.02 "orf, hypothetical protein" b0638 phpB 1.02 2.07 2.00 1.03 0.98 1.13 1.70 1.05 "homolog of Salmonella cobC, a phosphohistidine protein" b0639 ybeN 0.96 1.23 0.96 1.12 0.93 1.07 1.05 1.04 "orf, hypothetical protein" b0640 holA 1.02 1.08 0.76 1.09 1.32 1.03 0.95 1.15 "DNA polymerase III, delta subunit" b0641 rlpB 1.05 0.86 0.88 1.02 1.10 1.10 0.93 1.07 a minor lipoprotein b0642 leuS 0.85 0.81 0.70 1.08 1.17 0.90 0.79 1.05 leucine tRNA synthetase b0643 ybeL 1.47 1.85 1.89 1.37 1.40 1.74 1.39 putative alpha helical protein b0644 ybeQ 1.05 1.45 1.69 1.00 0.86 1.06 1.40 0.97 "orf, hypothetical protein" b0645 ybeR 1.77 1.23 0.96 1.50 0.96 "orf, hypothetical protein" b0646 ybeS 1.05 1.06 1.05 1.00 1.05 0.94 1.05 1.00 putative enzyme of polynucleotide modification b0647 ybeT 0.76 1.02 0.86 0.93 0.79 0.84 0.88 0.85 "orf, hypothetical protein" b0648 ybeU 0.98 1.02 1.04 1.04 0.94 1.05 1.01 1.01 putative tRNA ligase b0649 ybeV 1.18 1.08 0.99 1.05 0.92 1.13 0.99 "orf, hypothetical protein" b0650 ybeW 1.01 1.04 1.33 1.16 0.85 1.08 1.13 1.03 putative dnaK protein b0651 ybeK 0.86 1.20 0.75 0.91 0.83 0.97 0.94 0.90 putative tRNA synthetase b0652 gltL 1.10 1.34 1.18 1.47 1.09 1.32 1.21 1.29 ATP-binding protein of glutamate/aspartate transport system b0653 gltK 1.05 1.06 0.95 1.69 1.40 1.43 1.02 1.51 glutamate/aspartate transport system permease b0654 gltJ 1.17 1.33 1.37 1.24 1.25 1.31 glutamate/aspartate transport system permease b0655 ybeJ 1.46 1.94 1.30 0.93 0.85 0.96 1.57 0.91 putative periplasmic binding transport protein b0656 trs5_3 0.76 0.67 0.96 1.09 0.96 1.05 0.80 1.03 IS5 transposase b0657 lnt 2.76 1.07 0.98 1.06 1.05 0.78 1.60 0.96 "apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane" b0658 ybeX 1.05 0.94 1.10 0.83 1.13 1.04 1.03 1.00 putative transport protein b0659 ybeY 1.13 0.95 0.85 1.08 1.32 1.00 0.98 1.13 "orf, hypothetical protein" b0660 ybeZ 0.99 0.97 0.85 1.18 1.11 0.98 0.94 1.09 putative ATP-binding protein in pho regulon b0661 yleA 0.95 0.87 1.14 0.92 0.96 0.50 0.99 0.79 "orf, hypothetical protein" b0662 yleB 1.12 0.96 1.06 1.06 1.09 1.06 1.05 1.07 "orf, hypothetical protein" b0663 b0663 0.76 0.47 1.08 0.44 0.56 1.11 0.77 0.70 putative RNA b0667 b0667 0.65 0.43 1.03 0.48 0.66 1.07 0.70 0.74 putative RNA b0669 b0669 0.66 0.38 1.14 0.58 0.71 1.22 0.73 0.84 putative RNA b0671 b0671 0.63 0.50 1.18 0.46 0.81 1.22 0.77 0.83 putative RNA b0674 asnB 2.33 2.43 2.08 2.22 4.35 2.04 2.28 2.87 asparagine synthetase B b0675 nagD 1.22 1.02 0.83 1.08 1.09 1.01 1.02 1.06 N-acetylglucosamine metabolism b0676 nagC 0.86 0.87 0.83 0.98 1.39 0.99 0.85 1.12 transcriptional repressor of nag (N-acetylglucosamine) operon b0677 nagA 1.25 0.78 1.27 1.13 1.04 1.01 1.15 N-acetylglucosamine-6-phosphate deacetylase b0678 nagB 1.18 0.70 1.29 1.09 1.29 0.94 1.22 glucosamine-6-phosphate deaminase b0679 nagE 1.20 1.30 0.86 1.01 1.03 1.17 1.12 1.07 "PTS system, N-acetylglucosamine-specific enzyme IIABC" b0680 glnS 0.78 0.91 0.79 0.82 1.03 0.93 0.83 0.93 glutamine tRNA synthetase b0681 ybfM 1.02 1.44 1.15 1.09 1.11 1.20 1.10 "orf, hypothetical protein" b0682 ybfN 0.75 1.55 1.35 0.92 1.29 0.99 1.22 1.07 "orf, hypothetical protein" b0683 fur 0.92 0.74 1.41 0.89 1.16 0.83 1.02 0.96 negative regulator b0684 fldA 0.78 0.80 1.30 0.98 1.05 0.75 0.96 0.93 flavodoxin 1 b0685 ybfE 0.88 0.86 0.88 1.07 1.01 0.97 0.87 1.02 "orf, hypothetical protein" b0686 ybfF 0.99 0.96 0.60 1.16 0.97 0.91 0.85 1.01 "orf, hypothetical protein" b0687 seqA 0.84 0.87 0.71 1.16 1.08 1.06 0.81 1.10 negative modulator of initiation of replication b0688 pgm 1.19 1.08 0.74 1.12 1.09 1.02 1.00 1.08 phosphoglucomutase b0689 ybfP 0.94 1.21 1.05 1.05 0.86 1.06 1.07 0.99 putative pectinase b0690 ybfG 1.05 1.30 1.14 1.16 0.96 1.11 1.16 1.08 "orf, hypothetical protein" b0691 ybfH 0.96 1.20 0.87 1.00 0.93 0.87 1.01 0.93 "orf, hypothetical protein" b0692 potE 1.15 1.02 1.08 1.12 0.84 1.07 1.08 1.01 putrescine transport protein b0693 speF 1.12 1.31 1.02 1.15 0.89 0.98 1.15 1.01 "ornithine decarboxylase isozyme, inducible" b0694 kdpE 1.18 1.19 1.15 1.09 1.04 1.13 1.17 1.09 regulator of kdp operon (transcriptional effector) b0695 kdpD 1.05 1.11 1.89 1.08 0.86 0.97 1.35 0.97 sensor for high-affinity potassium transport system b0696 kdpC 1.04 1.08 1.06 1.07 1.00 1.02 1.06 1.03 high-affinity potassium transport system b0697 kdpB 1.00 1.15 1.11 1.01 1.13 1.07 1.08 "ATPase of high-affinity potassium transport system, B chain" b0698 kdpA 1.11 1.22 0.97 0.96 1.03 1.05 1.10 1.01 "ATPase of high-affinity potassium transport system, A chain" b0699 ybfA 1.25 1.85 1.05 1.04 0.91 1.06 1.38 1.00 "orf, hypothetical protein" b0700 rhsC 1.05 1.02 0.97 0.88 0.76 1.04 0.87 rhsC protein in rhs element b0701 b0701 1.03 0.66 0.99 0.90 1.09 0.85 0.99 protein in rhs element b0702 ybfB 0.82 1.01 0.83 0.87 0.83 0.90 0.89 0.87 "orf, hypothetical protein" b0703 b0703 1.28 1.45 1.13 0.92 0.95 1.36 1.00 "orf, hypothetical protein" b0704 ybfC 0.95 1.50 1.15 1.12 0.78 0.93 1.20 0.94 "orf, hypothetical protein" b0705 ybfL 1.22 1.18 1.30 0.73 0.89 1.07 1.23 0.90 putative receptor protein b0706 ybfD 1.01 1.60 1.23 1.18 0.82 1.15 1.28 1.05 putative DNA ligase b0707 ybgA 1.13 1.04 0.85 1.01 1.02 1.02 1.01 1.02 "orf, hypothetical protein" b0708 phrB 0.97 1.11 0.93 1.17 1.11 1.14 1.00 1.14 deoxyribodipyrimidine photolyase (photoreactivation) b0709 ybgH 1.09 0.99 1.47 0.94 0.91 1.08 1.18 0.98 putative transport protein b0710 ybgI 1.28 1.26 1.16 1.15 1.09 1.01 1.23 1.08 "orf, hypothetical protein" b0711 ybgJ 1.36 1.08 0.77 1.13 0.95 1.22 0.95 putative carboxylase b0712 ybgK 1.53 1.28 1.12 1.15 1.04 0.96 1.31 1.05 putative carboxylase b0713 ybgL 1.10 0.99 1.00 1.07 0.94 0.95 1.03 0.99 putative lactam utilization protein b0714 nei 0.99 1.21 1.02 0.99 1.15 1.10 1.07 1.08 endonuclease VIII and DNA N-glycosylase with an AP lyase activity b0715 abrB 1.10 1.22 1.01 1.10 0.99 1.18 1.11 1.09 putative transport protein b0716 ybgO 0.90 1.49 1.35 0.91 0.98 0.93 1.25 0.94 "orf, hypothetical protein" b0717 ybgP 0.96 1.49 0.99 1.10 0.87 1.05 1.15 1.01 putative chaperone b0718 ybgQ 1.27 1.02 0.97 0.91 1.27 0.97 putative outer membrane protein b0719 ybgD 1.72 1.08 1.20 1.03 1.40 1.12 putative fimbrial-like protein b0720 gltA 0.76 0.59 0.45 1.07 1.20 1.00 0.60 1.09 citrate synthase b0721 sdhC 0.80 0.60 0.82 0.59 0.80 0.67 "succinate dehydrogenase, cytochrome b556" b0722 sdhD 0.41 0.80 0.52 0.69 0.57 0.61 0.59 "succinate dehydrogenase, hydrophobic subunit" b0723 sdhA 0.45 0.74 0.64 0.67 0.66 0.60 0.66 "succinate dehydrogenase, flavoprotein subunit" b0724 sdhB 0.64 0.36 0.77 0.81 0.90 0.73 0.59 0.81 "succinate dehydrogenase, iron sulfur protein" b0725 b0725 0.49 0.78 0.92 0.80 0.96 0.64 0.89 "orf, hypothetical protein" b0726 sucA 0.40 0.41 0.56 0.80 0.42 0.41 0.59 2-oxoglutarate dehydrogenase (decarboxylase component) b0727 sucB 0.37 0.38 0.35 0.53 0.50 0.50 0.37 0.51 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) b0728 sucC 0.36 0.40 0.53 0.51 0.42 0.38 0.49 "succinyl-CoA synthetase, beta subunit" b0729 sucD 0.39 0.31 0.48 0.60 0.66 0.69 0.39 0.65 "succinyl-CoA synthetase, alpha subunit" b0730 farR 0.93 0.96 1.09 1.12 1.06 1.06 0.99 1.08 transcriptional regulator of succinylCoA synthetase operon b0731 hrsA 1.07 1.12 1.06 1.13 0.94 1.12 1.08 1.06 "protein modification enzyme, induction of ompC" b0732 ybgG 1.22 0.99 1.08 1.05 1.22 1.04 putative sugar hydrolase b0733 cydA 1.00 1.23 1.49 1.21 1.11 1.06 1.24 1.13 "cytochrome d terminal oxidase, polypeptide subunit I" b0734 cydB 0.97 1.37 1.14 1.09 1.09 1.17 1.11 cytochrome d terminal oxidase polypeptide subunit II b0735 ybgE 1.06 1.06 1.39 1.05 0.93 0.97 1.17 0.98 "orf, hypothetical protein" b0736 ybgC 1.08 1.47 1.01 1.09 1.04 1.28 1.05 "orf, hypothetical protein" b0737 tolQ 1.00 0.97 1.16 1.06 1.01 1.00 1.04 1.02 "inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins" b0738 tolR 0.94 1.13 1.30 1.01 0.89 0.98 1.12 0.96 "putative inner membrane protein, involved in the tonB-independent uptake of group A colicins" b0739 tolA 1.04 1.23 1.49 0.85 1.20 0.96 1.25 1.00 "membrane spanning protein, required for outer membrane integrity" b0740 tolB 0.82 0.74 1.05 0.95 1.05 0.91 0.87 0.97 periplasmic protein involved in the tonb-independent uptake of group A colicins b0741 pal 0.83 1.02 0.76 0.67 0.81 0.93 0.75 peptidoglycan-associated lipoprotein b0742 ybgF 0.80 0.50 0.83 0.93 0.81 0.82 0.71 0.85 "orf, hypothetical protein" b0750 nadA 1.21 1.03 1.39 1.13 1.16 1.04 1.21 1.11 "quinolinate synthetase, A protein" b0751 pnuC 1.21 1.45 1.19 1.06 1.07 1.33 1.11 required for NMN transport b0752 ybgR 1.17 1.24 1.30 1.26 1.25 1.27 1.24 1.26 putative transport system permease protein b0753 b0753 1.28 2.19 1.59 1.29 1.06 1.29 1.69 1.21 putative homeobox protein b0754 aroG 0.61 0.77 0.60 0.77 0.90 0.88 0.66 0.85 "3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible)" b0755 gpmA 1.00 0.89 0.65 0.94 0.93 1.08 0.85 0.98 phosphoglyceromutase 1 b0756 galM 1.12 0.65 1.31 0.88 1.17 0.88 1.12 galactose-1-epimerase (mutarotase) b0757 galK 1.04 1.09 0.57 1.08 1.15 1.18 0.90 1.14 galactokinase b0758 galT 0.88 0.45 0.80 1.02 0.66 0.91 galactose-1-phosphate uridylyltransferase b0759 galE 0.90 1.13 0.53 0.89 1.02 0.80 0.85 0.90 UDP-galactose-4-epimerase b0760 modF 0.88 1.02 0.63 0.92 1.18 0.93 0.84 1.01 ATP-binding component of molybdate transport system b0761 modE 1.14 1.04 1.00 0.97 0.93 1.09 0.97 molybdate uptake regulatory protein b0762 b0762 0.92 1.03 1.32 0.98 1.48 1.03 1.09 1.16 "orf, hypothetical protein" b0763 modA 1.10 0.91 0.85 1.02 1.10 0.93 molybdate-binding periplasmic protein; permease b0764 modB 1.25 1.00 0.94 0.93 1.03 1.13 0.97 molybdate transport permease protein b0765 modC 1.10 1.03 1.00 0.94 0.97 1.07 0.97 ATP-binding component of molybdate transport b0766 ybhA 1.08 0.87 0.93 0.92 0.98 0.91 0.96 0.94 putative phosphatase b0767 ybhE 1.34 1.30 0.94 1.90 1.18 1.37 1.19 1.48 putative isomerase b0768 ybhD 1.03 1.26 0.98 1.04 0.85 0.99 1.09 0.96 putative transcriptional regulator LYSR-type b0769 ybhH 1.04 1.47 0.89 0.91 0.88 1.00 1.13 0.93 "orf, hypothetical protein" b0770 ybhI 0.92 1.31 1.23 0.91 0.91 1.11 1.15 0.98 putative membrane pump protein b0771 ybhJ 0.65 1.40 0.92 1.07 0.92 0.94 0.99 0.98 putative enzyme b0772 ybhC 0.78 0.70 1.08 0.86 0.99 0.84 0.85 0.90 putative pectinesterase b0773 ybhB 0.96 1.31 1.33 1.01 0.76 1.07 1.20 0.95 "orf, hypothetical protein" b0774 bioA 0.50 1.04 0.81 1.04 0.50 0.96 "7,8-diaminopelargonic acid synthetase" b0775 bioB 0.79 1.26 0.59 0.99 0.92 0.79 0.88 0.90 "biotin synthesis, sulfur insertion?" b0776 bioF 0.95 0.72 1.07 0.99 1.08 0.83 1.05 8-amino-7-oxononanoate synthase b0777 bioC 0.89 0.74 0.68 0.91 0.99 0.83 0.77 0.91 biotin biosynthesis; reaction prior to pimeloyl CoA b0778 bioD 0.78 0.84 0.88 0.94 0.82 0.84 0.83 0.87 dethiobiotin synthetase b0779 uvrB 1.03 0.95 1.15 0.96 1.14 0.99 1.08 DNA repair; excision nuclease subunit B b0780 ybhK 1.08 1.15 1.59 0.94 0.94 1.09 1.27 0.99 putative structural protein b0781 moaA 0.88 1.12 0.87 0.94 0.96 1.06 0.96 0.99 "molybdopterin biosynthesis, protein A" b0782 moaB 1.01 0.77 1.11 0.86 0.93 0.89 0.97 "molybdopterin biosynthesis, protein B" b0783 moaC 1.10 0.86 0.76 1.15 0.93 1.08 0.91 1.05 "molybdopterin biosynthesis, protein C" b0784 moaD 0.92 0.79 1.03 0.89 1.02 0.85 0.98 molybdopterin biosynthesis b0785 moaE 1.23 0.94 0.96 0.93 1.08 1.03 1.04 1.01 "molybdopterin converting factor, subunit 2" b0786 ybhL 0.99 1.14 1.30 1.13 0.91 0.97 1.14 1.00 "orf, hypothetical protein" b0787 ybhM 1.12 1.34 1.02 0.95 0.94 1.02 1.16 0.97 "orf, hypothetical protein" b0788 ybhN 1.14 1.30 1.33 1.15 0.70 0.99 1.26 0.95 "orf, hypothetical protein" b0789 ybhO 1.13 0.88 1.15 1.01 1.05 1.00 1.07 putative synthetase b0790 ybhP 0.96 1.18 0.86 1.08 1.11 1.11 1.00 1.10 "orf, hypothetical protein" b0791 ybhQ 1.02 1.52 1.39 0.96 0.85 0.93 1.31 0.91 "orf, hypothetical protein" b0792 ybhR 1.06 1.05 1.11 1.08 0.89 0.86 1.07 0.94 "orf, hypothetical protein" b0793 ybhS 0.96 1.68 1.14 1.05 0.90 0.98 1.26 0.98 "orf, hypothetical protein" b0794 ybhF 0.97 1.24 0.94 0.97 1.12 0.94 1.05 1.01 putative ATP-binding component of a transport system b0795 b0795 0.88 1.35 0.89 1.15 1.02 0.94 1.04 1.04 putative membrane protein b0796 ybiH 1.28 1.06 0.99 1.07 1.02 1.17 1.03 putative transcriptional regulator b0797 rhlE 0.93 0.97 1.08 0.88 0.99 0.93 0.99 0.93 putative ATP-dependent RNA helicase b0798 ybiA 1.17 0.99 0.93 0.91 1.02 1.08 0.95 "orf, hypothetical protein" b0799 dinG 0.86 1.19 1.04 1.05 0.93 1.13 1.03 1.04 probably ATP-dependent helicase b0800 ybiB 1.18 1.18 putative enzyme b0801 ybiC 0.81 0.63 0.72 0.84 0.99 0.82 0.72 0.88 putative dehydrogenase b0802 ybiJ 0.97 1.45 0.83 1.09 0.93 0.86 1.08 0.96 "orf, hypothetical protein" b0803 ybiI 0.99 1.37 0.79 1.10 0.91 1.04 1.05 1.02 "orf, hypothetical protein" b0804 ybiX 0.89 0.85 0.23 0.96 0.81 0.66 0.66 0.81 putative enzyme b0805 b0805 1.11 0.74 0.04 1.07 0.87 0.95 0.63 0.96 putative outer membrane receptor for iron transport b0806 ybiM 1.05 2.14 1.01 1.03 1.01 1.06 1.40 1.03 "orf, hypothetical protein" b0807 ybiN 0.96 1.11 1.04 1.02 0.89 1.11 1.04 1.01 "orf, hypothetical protein" b0808 ybiO 0.84 0.96 1.03 0.91 0.91 1.41 0.94 1.08 putative transport protein b0809 glnQ 1.39 2.27 1.38 1.16 1.39 1.83 1.31 ATP-binding component of glutamine high-affinity transport system b0810 glnP 1.55 1.67 2.38 1.50 1.30 1.87 1.40 glutamine high-affinity transport system; membrane component b0811 glnH 2.86 2.50 3.33 2.32 2.55 2.10 2.90 2.32 periplasmic glutamine-binding protein; permease b0812 dps 2.20 3.33 3.64 3.79 2.83 2.77 3.42 "global regulator, starvation conditions" b0813 ybiF 0.96 1.55 1.11 0.99 1.05 1.01 1.21 1.02 putative transmembrane subunit b0814 ompX 1.48 1.20 1.75 1.12 1.78 1.40 1.48 1.43 outer membrane protein X b0815 ybiP 0.95 1.03 1.43 0.98 1.01 0.96 1.14 0.98 putative enzyme b0816 b0816 1.01 1.34 1.37 0.83 0.94 1.00 1.24 0.92 "orf, hypothetical protein" b0817 b0817 0.95 1.05 1.56 0.91 0.98 1.19 0.95 putative toxin b0818 ybiR 1.05 1.19 1.12 0.98 0.98 1.05 1.12 1.00 "orf, hypothetical protein" b0819 ybiS 1.15 0.95 0.88 0.89 0.94 1.05 0.90 "orf, hypothetical protein" b0820 ybiT 0.99 0.88 0.72 0.99 1.00 0.97 0.86 0.99 putative ATP-binding component of a transport system b0821 ybiU 1.07 1.29 1.35 1.03 1.04 0.94 1.24 1.00 "orf, hypothetical protein" b0822 b0822 0.95 1.16 2.00 1.12 0.78 1.11 1.37 1.00 "orf, hypothetical protein" b0823 ybiW 0.97 1.24 1.28 0.99 1.08 1.03 1.16 1.03 putative formate acetyltransferase b0824 ybiY 0.97 1.08 1.08 1.01 1.01 1.20 1.04 1.07 putative pyruvate formate-lyase 2 activating enzyme b0825 mipB 1.00 1.33 0.99 1.04 1.01 1.11 1.11 1.05 putative transaldolase b0826 moeB 0.93 1.12 1.02 1.12 0.95 1.03 1.03 molybdopterin biosynthesis b0827 moeA 0.96 0.96 0.91 0.98 0.98 1.07 0.94 1.01 molybdopterin biosynthesis b0828 ybiK 1.43 1.24 1.11 0.92 1.25 1.12 1.26 1.10 putative asparaginase b0829 b0829 1.10 0.98 0.86 0.88 0.97 0.89 0.98 0.91 putative ATP-binding component of a transport system b0830 b0830 1.19 1.24 0.85 1.08 1.01 1.17 1.09 1.09 putative transport protein b0831 b0831 1.04 1.19 1.08 1.10 1.01 1.10 1.10 1.07 putative transport system permease protein b0832 b0832 1.06 1.18 1.04 1.17 1.00 1.25 1.09 1.14 putative transport system permease protein b0833 b0833 0.98 0.82 0.93 0.79 0.94 0.90 0.89 "orf, hypothetical protein" b0834 b0834 0.83 0.86 0.84 0.74 0.81 0.75 0.84 0.77 "orf, hypothetical protein" b0835 yliG 0.86 0.92 1.08 0.79 0.99 0.92 0.95 0.90 "orf, hypothetical protein" b0836 b0836 1.36 2.28 3.13 1.60 1.27 1.68 2.26 1.52 putative receptor b0837 yliI 1.13 1.67 1.89 1.36 1.18 1.32 1.56 1.29 putative dehydrogenase b0838 yliJ 0.96 1.22 1.14 1.20 1.00 1.25 1.11 1.15 putative transferase b0839 dacC 1.21 1.11 1.16 1.45 1.39 1.38 1.16 1.41 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 b0840 deoR 1.12 1.01 0.99 1.19 1.09 1.07 1.09 "transcriptional repressor for deo operon, tsx, nupG" b0841 ybjG 0.93 0.90 0.85 1.02 0.88 1.03 0.89 0.98 "orf, hypothetical protein" b0842 cmr 1.05 1.23 1.22 1.11 1.00 1.08 1.17 1.06 proton motive force efflux pump b0843 ybjH 0.96 1.26 1.03 0.97 1.04 1.02 1.08 1.01 "orf, hypothetical protein" b0844 b0844 0.97 0.96 1.02 1.06 0.90 1.10 0.98 1.02 "orf, hypothetical protein" b0845 b0845 1.10 0.89 0.90 0.96 0.93 0.97 0.96 0.95 putative DEOR-type transcriptional regulator b0846 b0846 0.95 1.28 0.93 1.13 0.89 1.06 1.05 1.03 putative DEOR-type transcriptional regulator b0847 b0847 1.04 0.89 0.93 1.05 0.84 1.09 0.95 0.99 putative transport protein b0848 ybjM 0.92 0.97 0.86 1.01 0.93 1.05 0.92 1.00 "orf, hypothetical protein" b0849 grxA 0.95 1.11 1.05 1.03 0.91 0.95 1.04 0.96 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase b0850 ybjC 0.75 0.97 1.03 0.98 1.05 0.86 1.02 "orf, hypothetical protein" b0851 mdaA 0.71 0.92 1.08 0.98 0.71 0.99 modulator of drug activity A b0852 rimK 0.88 1.04 1.04 0.92 1.02 0.96 0.99 ribosomal protein S6 modification protein b0853 ybjN 0.85 0.69 1.12 0.89 1.05 0.97 0.89 0.97 putative sensory transduction regulator b0854 potF 2.93 3.03 4.87 4.45 3.54 2.98 4.29 periplasmic putrescine-binding protein; permease protein b0855 potG 2.02 1.38 2.44 2.89 2.65 2.13 1.95 2.56 ATP-binding component of putrescine transport system b0856 potH 1.62 1.26 2.22 1.84 1.12 1.45 1.70 1.47 putrescine transport protein; permease b0857 potI 1.45 1.40 1.52 1.49 1.09 1.10 1.46 1.23 putrescine transport protein; permease b0858 ybjO 0.94 1.16 1.20 0.99 1.08 1.02 1.10 1.03 "orf, hypothetical protein" b0859 ybjF 0.91 0.94 0.93 1.02 0.94 1.03 0.93 1.00 putative enzyme b0860 artJ 0.49 0.38 2.33 0.35 0.67 0.60 1.07 0.54 arginine 3rd transport system periplasmic binding protein b0861 artM 1.23 1.00 0.91 0.99 0.99 1.12 0.96 arginine 3rd transport system permease protein b0862 artQ 0.94 1.00 0.91 0.87 0.95 0.97 0.91 arginine 3rd transport system permease protein b0863 artI 1.11 0.93 0.96 1.00 0.91 0.93 1.00 0.95 arginine 3rd transport system periplasmic binding protein b0864 artP 0.95 0.78 1.25 0.93 1.07 0.82 0.99 0.94 ATP-binding component of 3rd arginine transport system b0865 ybjP 0.85 1.08 0.78 1.28 0.94 1.10 0.90 1.11 putative enzyme b0866 b0866 0.90 0.99 0.92 1.27 1.06 0.94 1.17 "orf, hypothetical protein" b0867 b0867 0.95 1.09 1.04 1.07 1.03 1.00 1.03 1.03 putative regulator b0868 b0868 0.94 1.07 0.97 1.08 0.91 1.09 0.99 1.03 putative nucleotide di-P-sugar epimerase or dehydratase b0869 ybjT 1.22 1.13 0.95 0.93 1.20 1.05 1.10 1.06 putative dTDP-glucose enzyme b0870 ybjU 0.97 0.93 0.92 1.07 1.17 0.97 0.94 1.07 putative arylsulfatase b0871 poxB 1.38 1.75 1.22 1.98 1.73 1.53 1.45 1.75 pyruvate oxidase b0872 b0872 1.03 1.08 1.11 1.21 0.94 1.25 1.07 1.13 putative enzyme b0873 ybjW 0.94 0.95 0.89 1.04 0.91 0.93 0.93 0.96 putative prismane b0874 ybjE 0.85 0.99 0.82 0.94 0.96 0.94 0.89 0.95 putative surface protein b0875 aqpZ 0.94 1.27 1.30 1.11 0.83 1.08 1.17 1.01 transmembrane water channel; aquaporin Z b0876 ybjD 0.99 0.96 0.89 1.08 0.84 1.09 0.95 1.00 "orf, hypothetical protein" b0877 ybjX 0.77 1.03 0.75 0.93 0.70 0.90 0.79 putative enzyme b0878 b0878 1.09 1.12 0.88 0.95 0.93 0.98 1.03 0.95 putative membrane protein b0879 ybjZ 1.10 1.21 0.93 1.09 1.07 1.27 1.08 1.14 putative ATP-binding component of a transport system b0880 cspD 1.93 2.20 1.52 1.28 1.17 1.71 1.88 1.39 cold shock protein b0881 yljA 1.55 1.92 0.93 1.15 1.93 1.14 1.47 1.41 "orf, hypothetical protein" b0882 clpA 0.96 0.99 0.58 1.42 1.36 1.41 0.84 1.40 ATP-binding component of serine protease b0884 infA 0.94 0.92 1.41 0.47 0.98 0.96 1.09 0.80 protein chain initiation factor IF-1 b0885 aat 1.43 1.00 0.95 1.02 0.93 1.22 0.97 "leucyl, phenylalanyl-tRNA-protein transferase" b0886 cydC 0.95 1.19 0.88 0.95 1.17 0.95 1.01 1.02 ATP-binding component of cytochrome-related transport b0887 cydD 0.91 0.98 0.98 1.08 1.02 0.95 1.03 "ATP-binding component of cytochrome-related transport, Zn sensitive" b0888 trxB 0.88 0.79 0.93 0.79 0.98 0.81 0.87 0.86 thioredoxin reductase b0889 lrp 0.99 0.81 0.69 0.78 1.01 0.90 0.83 regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system b0890 ftsK 1.09 0.86 1.11 1.04 1.05 0.98 1.07 cell division protein b0891 lolA 1.08 1.09 1.08 1.10 1.21 1.08 1.08 1.13 periplasmic protein effects translocation of lipoproteins from inner membrane to outer b0892 ycaJ 0.99 1.02 0.93 0.91 1.04 0.96 0.98 0.97 putative polynucleotide enzyme b0893 serS 0.96 0.94 0.79 0.90 1.38 0.91 0.90 1.06 serine tRNA synthetase; also charges selenocystein tRNA with serine b0894 dmsA 1.12 2.70 1.04 1.12 1.00 1.20 1.62 1.11 anaerobic dimethyl sulfoxide reductase subunit A b0895 dmsB 1.28 0.99 1.10 0.96 1.07 1.14 1.04 anaerobic dimethyl sulfoxide reductase subunit B b0896 dmsC 0.77 1.43 1.41 1.07 1.06 1.17 1.20 1.10 anaerobic dimethyl sulfoxide reductase subunit C b0897 ycaC 2.85 4.70 3.85 2.96 1.95 2.13 3.80 2.35 "orf, hypothetical protein" b0898 ycaD 1.08 1.14 1.72 1.15 1.01 1.12 1.31 1.09 putative transport b0899 b0899 1.17 1.01 1.00 0.92 1.02 1.12 1.06 1.02 putative transport b0900 ycaN 1.21 1.28 1.19 1.11 0.94 1.13 1.23 1.06 putative transcriptional regulator LYSR-type b0901 ycaK 0.92 1.26 1.61 1.03 0.92 0.97 1.26 0.97 "orf, hypothetical protein" b0902 pflA 1.19 1.85 0.99 1.01 1.00 1.52 1.00 pyruvate formate lyase activating enzyme 1 b0903 pflB 1.22 1.16 0.65 1.49 1.82 1.16 1.01 1.49 formate acetyltransferase 1 b0904 focA 1.14 1.25 1.11 1.14 1.14 1.07 1.17 1.12 probable formate transporter (formate channel 1) b0905 ycaO 1.01 0.77 0.79 0.77 0.92 0.80 0.86 0.83 "orf, hypothetical protein" b0906 ycaP 1.17 1.41 1.92 1.16 1.14 1.21 1.50 1.17 "orf, hypothetical protein" b0907 serC 0.90 0.86 0.64 0.97 1.39 1.01 0.80 1.12 3-phosphoserine aminotransferase b0908 aroA 0.87 0.82 0.56 1.05 1.17 0.82 0.75 1.01 5-enolpyruvylshikimate-3-phosphate synthetase b0909 ycaL 0.99 1.35 1.11 1.03 1.02 1.00 1.15 1.02 putative heat shock protein b0910 cmk 0.95 0.53 0.99 0.90 1.07 1.01 0.82 0.99 cytidylate kinase b0911 rpsA 0.52 0.70 0.61 0.63 0.61 0.62 30S ribosomal subunit protein S1 b0912 himD 1.15 1.80 1.59 0.95 0.88 0.89 1.51 0.91 "integration host factor (IHF), beta subunit; site-specific recombination" b0913 ycaI 0.96 1.00 0.94 1.08 0.87 0.96 0.97 0.97 "orf, hypothetical protein" b0914 msbA 0.75 0.67 1.06 0.80 0.99 0.87 0.83 0.89 ATP-binding transport protein; multicopy suppressor of htrB b0915 ycaH 1.06 0.89 1.28 0.86 0.90 0.87 1.08 0.88 putative EC 1.2 enzyme b0916 ycaQ 0.98 1.19 0.99 0.99 0.99 1.15 1.05 1.04 "orf, hypothetical protein" b0917 ycaR 0.91 0.94 1.05 1.06 0.87 0.94 0.97 0.96 "orf, hypothetical protein" b0918 kdsB 0.84 0.65 0.94 0.91 0.87 0.82 0.81 0.87 CTP:CMP-3-deoxy-D-manno-octulosonate transferase b0919 b0919 0.98 1.35 0.98 0.90 1.02 1.17 0.97 "orf, hypothetical protein" b0920 ycbC 0.91 1.02 1.15 1.01 0.94 0.95 1.03 0.97 "orf, hypothetical protein" b0921 smtA 0.76 0.85 1.05 1.11 1.01 0.80 1.06 S-adenosylmethionine-dependent methyltransferase b0922 mukF 0.69 0.74 0.92 0.91 0.96 0.71 0.93 mukF protein (killing factor KICB) b0923 mukE 0.85 0.74 0.65 0.99 1.04 0.93 0.75 0.99 "orf, hypothetical protein" b0924 mukB 0.91 1.12 0.67 1.12 1.03 1.11 0.90 1.09 kinesin-like cell division protein involved in chromosome partitioning b0925 ycbB 1.30 1.30 1.05 1.30 1.26 1.33 1.22 1.30 putative amidase b0926 ycbK 0.98 0.84 1.18 1.14 1.13 1.00 1.14 "orf, hypothetical protein" b0927 ycbL 1.18 0.69 0.91 0.97 1.00 1.00 0.93 0.99 "orf, hypothetical protein" b0928 aspC 0.56 0.59 0.60 0.71 0.82 0.72 0.58 0.75 aspartate aminotransferase b0929 ompF 0.97 0.84 1.96 1.11 1.53 1.23 1.26 1.29 outer membrane protein 1a (Ia;b;F) b0930 asnS 0.64 0.67 0.86 0.86 0.88 0.74 0.72 0.83 asparagine tRNA synthetase b0931 pncB 0.83 0.99 0.93 0.96 1.14 1.07 0.92 1.06 nicotinate phosphoribosyltransferase b0932 pepN 1.04 1.10 0.57 1.19 1.58 1.00 0.90 1.26 aminopeptidase N b0933 ycbE 1.05 1.17 1.16 1.08 0.92 1.20 1.13 1.07 putative ATP-binding component of a transport system b0934 ycbM 1.10 1.12 0.98 0.85 0.87 1.11 0.90 putative transport system permease protein b0935 ycbN 1.02 1.23 1.12 1.07 0.82 1.00 1.12 0.96 "orf, hypothetical protein" b0936 ycbO 0.93 1.06 0.92 1.05 0.98 0.96 0.97 1.00 "orf, hypothetical protein" b0937 ycbP 0.96 1.14 1.23 1.05 0.86 0.94 1.11 0.95 "orf, hypothetical protein" b0938 ycbQ 1.57 1.07 1.01 0.96 1.57 1.01 putative fimbrial-like protein b0939 ycbR 0.98 1.02 0.84 0.88 0.98 0.91 putative chaperone b0940 ycbS 0.95 1.33 1.19 1.18 0.99 1.11 1.16 1.09 putative outer membrane protein b0941 b0941 0.98 1.04 1.19 1.09 0.88 1.17 1.07 1.05 homolog of Salmonella FimH protein b0942 b0942 0.98 1.06 1.03 1.19 1.03 0.90 1.02 1.04 putative fimbrial-like protein b0943 b0943 1.12 1.38 0.94 1.01 1.00 1.10 1.15 1.04 putative fimbrial-like protein b0944 ycbF 0.87 1.11 1.10 1.06 0.92 1.04 1.03 1.01 putative chaperone b0945 pyrD 0.75 0.69 2.38 0.89 0.83 0.73 1.27 0.82 dihydro-orotate dehydrogenase b0946 ycbW 1.27 1.39 1.61 1.08 1.26 1.32 1.42 1.22 "orf, hypothetical protein" b0947 b0947 0.93 1.05 0.89 1.06 0.86 0.99 0.96 0.97 "orf, hypothetical protein" b0948 ycbY 0.86 0.89 0.79 0.94 1.08 0.97 0.85 1.00 putative oxidoreductase b0949 uup 0.86 0.91 0.93 1.16 1.11 0.88 1.07 putative ATP-binding component of a transport system b0950 pqiA 1.04 1.01 1.19 1.05 0.87 1.10 1.08 1.01 paraquat-inducible protein A b0951 pqiB 0.95 0.96 1.33 1.03 1.21 1.18 1.08 1.14 paraquat-inducible protein B b0952 ymbA 0.97 1.18 1.30 1.12 0.97 1.12 1.15 1.07 "orf, hypothetical protein" b0953 rmf 6.73 4.35 2.08 1.63 2.71 5.54 2.14 ribosome modulation factor b0954 fabA 0.83 0.60 1.47 0.76 0.98 0.88 0.97 0.87 "beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase" b0955 b0955 1.03 0.70 0.84 0.86 0.84 putative ATP-dependent protease b0956 ycbG 1.09 1.18 1.30 0.89 1.00 1.04 1.19 0.98 putative dehydrogenase b0957 ompA 0.91 0.84 0.81 1.25 1.88 0.95 0.85 1.36 outer membrane protein 3a (II*;G;d) b0958 sulA 1.01 0.77 1.11 1.18 1.11 1.11 0.96 1.13 suppressor of lon; inhibits cell division and ftsZ ring formation b0959 b0959 0.91 0.92 1.49 0.99 1.06 0.90 1.11 0.98 "orf, hypothetical protein" b0960 b0960 0.92 1.09 1.30 0.97 1.29 1.12 1.10 1.13 "orf, hypothetical protein" b0961 yccF 0.94 1.00 0.90 0.97 0.96 0.98 0.95 0.97 "orf, hypothetical protein" b0962 helD 0.95 0.78 0.93 0.95 0.90 1.10 0.89 0.98 DNA helicase IV b0963 mgsA 0.91 0.95 0.96 0.94 0.89 0.98 0.94 0.94 methylglyoxal synthase b0964 b0964 0.91 1.17 1.01 0.93 1.07 1.07 1.03 1.02 "orf, hypothetical protein" b0965 b0965 1.46 0.88 1.20 1.03 1.29 1.17 1.17 "orf, hypothetical protein" b0966 yccV 1.18 1.21 1.39 1.22 1.01 1.07 1.26 1.10 "orf, hypothetical protein" b0967 b0967 0.80 0.80 1.18 0.79 0.74 0.93 0.77 putative oxidoreductase b0968 b0968 1.19 1.20 2.22 1.16 0.94 1.02 1.54 1.04 "orf, hypothetical protein" b0969 yccK 1.23 1.82 0.99 0.91 0.86 1.52 0.92 putative sulfite reductase (EC 1.8.-.-) b0970 yccA 1.02 1.25 0.82 1.31 1.14 1.07 putative carrier/transport protein b0972 hyaA 0.86 1.27 0.98 1.03 0.89 1.06 0.97 hydrogenase-1 small subunit b0973 hyaB 1.52 0.99 0.85 0.91 1.09 1.06 1.12 1.02 hydrogenase-1 large subunit b0974 hyaC 1.42 1.15 1.08 1.02 1.03 1.28 1.04 probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit b0975 hyaD 1.17 1.04 1.08 1.00 1.00 1.17 1.10 1.06 processing of HyaA and HyaB proteins b0976 hyaE 0.98 1.03 0.97 0.94 0.87 1.01 0.93 processing of HyaA and HyaB proteins b0977 hyaF 0.98 1.07 1.54 1.13 0.94 1.23 1.20 1.10 nickel incorporation into hydrogenase-1 proteins b0978 appC 1.14 1.19 3.23 1.21 1.07 1.14 1.85 1.14 "probable third cytochrome oxidase, subunit I" b0979 appB 1.10 1.51 2.33 1.20 0.93 1.01 1.65 1.05 "probable third cytochrome oxidase, subunit II" b0980 appA 1.35 2.86 0.92 1.36 2.10 1.14 phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic b0981 yccC 1.06 0.93 1.33 0.98 0.92 1.03 1.11 0.98 "orf, hypothetical protein" b0982 yccY 1.31 0.94 0.92 0.85 0.89 1.13 0.89 putative phosphatase b0983 yccZ 1.18 1.23 0.99 1.07 1.05 1.21 1.04 putative function in exopolysaccharide production b0984 ymcA 1.16 1.27 1.14 1.02 0.98 0.99 1.19 1.00 "orf, hypothetical protein" b0985 ymcB 0.93 1.06 0.99 1.07 0.81 1.00 0.99 0.96 "orf, hypothetical protein" b0986 ymcC 0.99 0.98 1.02 1.14 0.86 1.06 1.00 1.02 putative regulator b0987 ymcD 1.17 1.28 0.97 0.98 0.93 1.03 1.14 0.98 "orf, hypothetical protein" b0988 insB_4 0.80 0.92 0.97 0.92 0.96 0.86 0.95 IS1 protein InsB b0989 cspH 0.95 1.27 1.09 1.09 0.87 1.01 1.10 0.99 cold shock-like protein b0990 cspG 1.03 0.95 1.12 0.94 1.00 0.99 1.02 homolog of Salmonella cold shock protein b0991 sfa 0.95 0.81 0.68 0.93 1.51 0.92 0.81 1.12 suppresses fabA and ts growth mutation b0992 yccM 0.95 1.16 0.88 1.02 1.01 1.03 1.00 1.02 "orf, hypothetical protein" b0993 torS 1.11 0.91 1.25 1.13 1.00 1.22 1.09 1.12 sensor protein torS (regulator TorR) b0994 torT 0.94 0.94 1.01 1.19 0.94 1.08 0.96 1.07 "part of regulation of tor operon, periplasmic" b0995 torR 0.97 1.11 1.14 1.04 0.96 1.06 1.07 1.02 response transcriptional regulator for torA (sensor TorS) b0996 torC 1.05 1.22 1.05 0.99 1.09 1.13 1.04 "trimethylamine N-oxide reductase, cytochrome c-type subunit" b0997 torA 0.93 1.05 0.99 1.04 0.93 1.03 trimethylamine N-oxide reductase subunit b0998 torD 0.98 1.26 1.41 1.02 0.97 1.22 1.00 part of trimethylamine-N-oxide oxidoreductase b0999 yccD 1.22 1.23 1.45 1.12 0.90 1.22 1.30 1.08 "orf, hypothetical protein" b1000 cbpA 2.47 3.35 2.78 2.06 1.44 1.52 2.87 1.67 curved DNA-binding protein; functions closely related to DnaJ b1001 yccE 1.02 2.29 1.59 0.96 1.11 0.98 1.63 1.02 "orf, hypothetical protein" b1002 agp 1.26 1.00 1.34 1.15 1.02 1.13 1.17 periplasmic glucose-1-phosphatase b1003 yccJ 1.42 1.77 1.52 1.30 1.16 1.43 1.57 1.30 "orf, hypothetical protein" b1004 wrbA 1.68 1.57 1.20 2.29 2.50 1.97 1.48 2.25 trp repressor binding protein; affects association of trp repressor and operator b1005 ycdF 0.98 0.83 0.89 1.19 1.36 1.18 0.90 1.24 "orf, hypothetical protein" b1006 ycdG 2.54 1.50 5.56 1.96 1.37 1.84 3.20 1.72 putative transport protein b1007 b1007 3.86 4.00 1.87 1.33 1.67 3.93 1.62 "orf, hypothetical protein" b1008 b1008 1.82 3.84 3.57 2.05 1.52 1.65 3.08 1.74 putative enzyme b1009 b1009 6.17 3.33 2.67 2.73 1.97 4.75 2.46 putative acetyltransferase b1010 b1010 1.66 4.07 1.37 1.71 1.47 1.45 2.37 1.54 "orf, hypothetical protein" b1011 b1011 2.41 2.79 6.67 2.44 2.17 1.65 3.96 2.09 putative synthetase b1012 b1012 3.80 5.02 7.69 4.03 2.51 2.38 5.50 2.97 "orf, hypothetical protein" b1013 ycdC 0.98 0.86 1.18 0.81 0.82 0.99 1.01 0.87 putative tet operon regulator b1014 putA 0.99 0.84 0.88 0.89 0.99 0.87 "proline dehydrogenase, P5C dehydrogenase" b1015 putP 1.09 1.02 1.75 0.81 0.84 0.96 1.29 0.87 major sodium/proline symporter b1016 b1016 1.01 0.92 0.93 0.85 0.99 0.91 0.95 0.92 "orf, hypothetical protein" b1017 b1017 1.10 1.02 0.77 0.86 0.98 0.88 0.96 0.91 putative cytochrome b1018 ycdO 0.91 0.84 0.48 0.69 0.83 0.65 0.74 0.72 "orf, hypothetical protein" b1019 ycdB 0.88 1.14 0.89 0.88 0.59 1.01 0.79 "orf, hypothetical protein" b1020 phoH 2.05 2.13 1.62 1.30 2.00 2.09 1.64 "PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation" b1021 ycdP 0.98 1.18 1.23 0.98 0.96 0.88 1.13 0.94 "orf, hypothetical protein" b1022 ycdQ 1.17 1.07 0.86 1.00 0.88 0.98 1.03 0.95 "orf, hypothetical protein" b1023 ycdR 1.12 1.38 0.97 1.11 0.90 0.89 1.16 0.97 "orf, hypothetical protein" b1024 ycdS 1.05 1.40 1.59 1.15 0.91 1.07 1.35 1.04 putative outer membrane protein b1025 ycdT 0.93 1.18 1.41 1.21 0.96 1.06 1.17 1.08 "orf, hypothetical protein" b1026 tra5_3 0.96 1.18 1.33 1.05 0.93 0.98 1.16 0.99 IS3 putative transposase b1027 b1027 1.11 0.96 1.79 1.08 1.02 0.97 1.29 1.02 "orf, hypothetical protein" b1028 b1028 1.19 1.26 1.20 1.08 0.93 1.03 1.22 1.01 "orf, hypothetical protein" b1029 ycdU 0.98 1.29 1.52 1.18 0.86 0.92 1.26 0.99 "orf, hypothetical protein" b1030 b1030 0.76 1.09 1.11 1.04 0.81 0.79 0.99 0.88 "orf, hypothetical protein" b1031 ycdV 0.91 0.96 1.01 0.85 1.12 0.94 0.99 putative ribosomal protein b1033 ycdW 0.84 0.84 0.56 0.98 1.06 0.92 0.75 0.99 putative dehydrogenase b1034 ycdX 0.82 0.82 1.16 1.02 0.92 0.98 0.93 0.97 "orf, hypothetical protein" b1035 ycdY 0.90 0.76 0.77 1.02 0.93 1.08 0.81 1.01 putative oxidoreductase component b1036 ycdZ 1.15 1.01 1.43 1.04 0.94 1.04 1.20 1.01 "orf, hypothetical protein" b1037 csgG 1.48 0.78 1.02 0.92 1.01 1.13 0.98 "curli production assembly/transport component, 2nd curli operon" b1038 csgF 1.15 1.30 0.53 1.07 1.05 1.00 0.99 1.04 "curli production assembly/transport component, 2nd curli operon" b1039 csgE 1.01 1.04 0.59 1.05 0.87 0.96 0.88 0.96 "curli production assembly/transport component, 2nd curli operon" b1040 csgD 1.25 1.24 0.60 0.95 0.98 1.06 1.03 1.00 putative 2-component transcriptional regulator for 2nd curli operon b1041 csgB 1.09 1.27 1.15 1.12 0.92 0.95 1.17 1.00 "minor curlin subunit precursor, similar ro CsgA" b1042 csgA 1.14 1.18 1.27 0.98 0.99 1.05 1.20 1.01 "curlin major subunit, coiled surface structures; cryptic" b1043 csgC 1.01 1.60 0.97 0.98 0.96 1.01 1.19 0.98 putative curli production protein b1044 b1044 1.03 1.14 0.91 1.03 1.00 0.85 1.03 0.96 "orf, hypothetical protein" b1045 b1045 1.13 1.41 1.15 1.08 1.14 1.04 1.23 1.09 putative polyprotein b1046 ymdC 1.35 1.21 1.16 1.11 1.21 0.94 1.24 1.09 putative synthase b1047 ymdD 0.95 1.19 1.10 0.91 0.80 0.88 1.08 0.86 "orf, hypothetical protein" b1048 mdoG 0.89 0.78 0.83 0.96 1.14 0.97 0.83 1.02 periplasmic glucans biosynthesis protein b1049 mdoH 0.92 0.87 0.96 1.01 0.98 0.99 0.92 0.99 membrane glycosyltransferase; synthesis of membrane-derived oligosaccharide (MDO) b1050 yceK 1.50 1.70 1.85 1.76 1.17 1.43 1.68 1.45 "orf, hypothetical protein" b1051 msyB 2.37 2.92 2.22 3.18 2.76 2.98 2.50 2.97 acidic protein suppresses mutants lacking function of protein export b1052 b1052 0.98 1.01 0.98 1.04 1.23 0.96 0.99 1.08 "orf, hypothetical protein" b1053 yceE 1.04 1.01 1.22 1.15 1.02 1.07 1.09 1.08 putative transport protein b1054 htrB 0.93 1.01 1.08 1.22 1.02 1.16 1.01 1.13 heat shock protein b1055 yceA 0.68 0.62 0.91 0.97 0.82 0.94 0.74 0.91 "orf, hypothetical protein" b1056 yceI 0.92 1.00 0.74 0.89 1.11 0.89 0.89 0.96 "orf, hypothetical protein" b1057 b1057 0.98 1.10 0.82 1.08 0.97 1.08 0.97 1.04 putative cytochrome b1058 yceO 0.92 1.04 1.64 1.09 0.85 1.03 1.20 0.99 "orf, hypothetical protein" b1059 solA 0.89 0.73 0.96 1.18 0.94 1.02 0.86 1.05 sarcosine oxidase-like protein b1060 yceP 1.21 1.51 2.70 1.02 0.83 1.26 1.81 1.04 "orf, hypothetical protein" b1061 dinI 0.89 0.84 1.39 0.98 0.92 0.98 1.04 0.96 damage-inducible protein I b1062 pyrC 0.70 0.47 1.03 0.99 1.06 0.93 0.73 0.99 dihydro-orotase b1063 yceB 0.96 0.86 1.23 1.22 1.09 1.10 1.02 1.14 "orf, hypothetical protein" b1064 grxB 1.21 1.31 1.43 2.04 1.64 1.74 1.32 1.81 glutaredoxin 2 b1065 yceL 1.00 1.00 1.04 1.05 0.88 1.07 1.01 1.00 "orf, hypothetical protein" b1066 rimJ 1.06 1.02 0.98 1.14 1.23 1.16 1.02 1.18 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 b1067 yceH 1.16 0.93 0.84 1.05 0.91 1.07 0.98 1.01 "orf, hypothetical protein" b1068 mviM 0.95 0.86 1.01 0.86 1.07 0.91 0.98 putative virulence factor b1069 mviN 0.99 0.88 0.96 0.86 0.98 0.94 0.93 putative virulence factor b1070 flgN 1.23 1.41 1.07 0.94 1.15 1.32 1.05 protein of flagellar biosynthesis b1071 flgM 1.28 0.94 0.96 1.12 1.11 1.04 anti-FliA (anti-sigma) factor; also known as RflB protein b1072 flgA 1.56 1.04 1.26 1.06 1.18 1.30 1.17 flagellar biosynthesis; assembly of basal-body periplasmic P ring b1073 flgB 0.86 0.97 0.86 1.50 0.87 1.25 0.90 1.21 "flagellar biosynthesis, cell-proximal portion of basal-body rod" b1074 flgC 1.03 0.94 0.68 1.19 1.05 1.09 0.88 1.11 "flagellar biosynthesis, cell-proximal portion of basal-body rod" b1075 flgD 1.09 1.57 0.70 1.45 0.93 1.16 1.12 1.18 "flagellar biosynthesis, initiation of hook assembly" b1076 flgE 1.24 1.14 1.00 2.05 1.37 1.25 1.13 1.56 "flagellar biosynthesis, hook protein" b1077 flgF 1.03 0.87 1.18 1.40 1.02 1.22 1.03 1.21 "flagellar biosynthesis, cell-proximal portion of basal-body rod" b1078 flgG 0.99 1.40 1.14 1.32 1.02 1.08 1.18 1.14 "flagellar biosynthesis, cell-distal portion of basal-body rod" b1079 flgH 1.12 1.62 1.04 1.30 1.04 1.23 1.26 1.19 "flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring protein" b1080 flgI 1.05 1.24 1.54 1.20 1.20 1.27 1.28 1.22 homolog of Salmonella P-ring of flagella basal body b1081 flgJ 1.10 1.06 1.10 1.14 0.91 1.23 1.09 1.09 flagellar biosynthesis b1082 flgK 1.04 1.42 0.99 1.19 1.04 1.13 1.15 1.12 "flagellar biosynthesis, hook-filament junction protein 1" b1083 flgL 1.11 1.32 1.33 1.04 1.33 1.21 1.23 flagellar biosynthesis; hook-filament junction protein b1084 rne 0.98 0.53 0.99 0.76 0.86 0.76 0.87 "RNase E, membrane attachment, mRNA turnover, maturation 5S RNA" b1085 b1085 0.95 1.23 1.15 0.89 1.07 1.09 1.11 1.02 "orf, hypothetical protein" b1086 yceC 0.84 0.82 1.03 0.69 0.88 0.79 0.90 0.79 "orf, hypothetical protein" b1087 yceF 1.13 1.12 1.20 1.16 1.13 1.16 "orf, hypothetical protein" b1088 yceD 0.69 1.06 1.35 0.74 0.85 0.77 1.03 0.79 "orf, hypothetical protein" b1089 rpmF 0.66 0.56 1.00 0.72 0.63 0.90 0.74 0.75 50S ribosomal subunit protein L32 b1090 plsX 0.83 0.74 1.01 0.92 0.99 0.83 0.86 0.91 glycerolphosphate auxotrophy in plsB background b1091 fabH 0.77 0.72 0.68 0.93 0.98 0.88 0.72 0.93 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase b1092 fabD 0.65 0.61 0.82 0.90 0.95 0.63 0.89 malonyl-CoA-[acyl-carrier-protein] transacylase b1093 fabG 0.99 0.75 0.83 0.72 0.89 1.06 0.86 0.89 3-oxoacyl-[acyl-carrier-protein] reductase b1094 acpP 1.27 1.06 1.22 0.49 0.70 1.43 1.18 0.87 acyl carrier protein b1095 fabF 0.57 0.79 1.47 0.68 1.47 3-oxoacyl-[acyl-carrier-protein] synthase II b1096 pabC 1.17 1.01 0.96 1.06 1.31 0.78 1.05 1.05 4-amino-4-deoxychorismate lyase b1097 yceG 0.90 0.78 1.06 0.93 0.98 0.84 0.99 putative thymidylate kinase (EC 2.7.4.9) b1098 tmk 0.98 0.94 1.02 0.99 0.97 1.04 0.98 1.00 thymidylate kinase b1099 holB 0.90 1.01 0.93 1.03 0.96 0.94 0.95 0.98 "DNA polymerase III, delta prime subunit" b1100 ycfH 1.03 0.82 1.04 1.03 1.01 0.93 1.03 "orf, hypothetical protein" b1101 ptsG 0.31 0.24 0.56 0.34 0.50 0.51 0.37 0.45 "PTS system, glucose-specific IIBC component" b1102 fhuE 1.17 1.26 0.19 1.05 1.09 1.12 0.87 1.09 outer membrane receptor for ferric iron uptake b1103 ycfF 1.22 1.16 0.97 1.17 0.99 1.00 1.12 1.05 "orf, hypothetical protein" b1104 ycfL 0.96 0.68 1.01 0.91 0.97 0.82 0.96 "orf, hypothetical protein" b1105 ycfM 1.03 1.04 1.01 1.30 1.03 1.11 1.03 1.15 "orf, hypothetical protein" b1106 ycfN 0.96 1.02 1.08 1.10 1.15 1.11 1.02 1.12 putative beta-glucosidase (EC 3.2.1.21) b1107 ycfO 1.00 1.12 1.43 1.34 1.12 1.16 1.18 1.21 "orf, hypothetical protein" b1108 ycfP 1.23 1.34 2.04 1.58 1.43 1.28 1.54 1.43 "orf, hypothetical protein" b1109 ndh 0.92 0.84 0.94 0.89 1.05 0.88 0.96 respiratory NADH dehydrogenase b1110 ycfJ 1.02 1.09 1.27 1.06 1.04 1.08 1.13 1.06 "orf, hypothetical protein" b1111 ycfQ 1.10 1.35 1.27 1.12 1.21 0.97 1.24 1.10 "orf, hypothetical protein" b1112 ycfR 0.94 1.35 0.91 1.06 0.92 1.02 1.07 1.00 "orf, hypothetical protein" b1113 ycfS 0.98 0.86 1.05 1.01 1.05 1.00 0.96 1.02 "orf, hypothetical protein" b1114 mfd 0.74 0.69 1.15 0.91 0.92 0.84 0.86 0.89 transcription-repair coupling factor; mutation frequency decline b1115 ycfT 1.04 1.31 1.12 1.07 0.91 1.14 1.16 1.04 "orf, hypothetical protein" b1116 ycfU 1.17 0.96 1.04 0.93 0.99 0.97 1.06 0.96 "orf, hypothetical protein" b1117 ycfV 0.90 0.80 0.88 0.95 0.87 1.01 0.86 0.94 putative ATP-binding component of a transport system b1118 ycfW 1.66 1.06 1.15 0.99 1.11 1.11 1.29 1.07 putative kinase b1119 ycfX 1.00 0.92 0.75 1.00 1.30 1.16 0.89 1.15 putative NAGC-like transcriptional regulator b1120 cobB 0.99 1.02 0.78 1.01 1.14 0.96 0.93 1.04 "putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase" b1121 b1121 1.07 1.77 0.62 0.98 0.76 0.88 1.15 0.87 homolog of virulence factor b1122 ymfA 0.99 1.12 1.08 1.01 0.90 0.91 1.06 0.94 "orf, hypothetical protein" b1123 potD 0.72 0.60 0.58 0.58 0.83 0.75 0.63 0.72 spermidine/putrescine periplasmic transport protein b1124 potC 0.86 0.62 0.79 0.82 0.86 0.70 0.76 0.79 spermidine/putrescine transport system permease b1125 potB 0.71 0.62 0.81 0.68 0.86 0.68 0.71 0.74 spermidine/putrescine transport system permease b1126 potA 0.53 0.71 0.74 0.73 0.67 0.62 0.71 ATP-binding component of spermidine/putrescine transport b1127 pepT 1.48 1.42 1.96 1.52 1.10 1.47 1.62 1.36 putative peptidase T b1128 ycfD 1.06 1.12 1.64 0.96 1.05 0.96 1.27 0.99 "orf, hypothetical protein" b1129 phoQ 1.06 0.92 0.77 0.91 1.02 0.99 0.92 0.97 sensor protein PhoQ b1130 phoP 1.01 1.31 0.85 0.91 0.78 0.87 1.06 0.85 transcriptional regulatory protein b1131 purB 0.66 0.56 0.43 0.77 0.92 0.66 0.55 0.78 adenylosuccinate lyase b1132 ycfC 0.93 0.72 0.52 0.97 1.00 0.61 0.72 0.86 "orf, hypothetical protein" b1133 ycfB 0.87 0.60 0.85 1.05 0.82 0.74 0.91 "orf, hypothetical protein" b1134 b1134 0.95 0.67 0.67 1.05 1.02 0.76 1.04 putative phosphohydrolase b1135 ymfC 0.97 1.06 1.14 1.13 1.01 1.05 1.06 1.06 "orf, hypothetical protein" b1136 icdA 0.64 0.45 0.48 0.78 0.47 0.68 0.52 0.64 "isocitrate dehydrogenase, specific for NADP+" b1137 ymfD 0.95 1.06 1.06 1.16 0.86 1.12 1.02 1.05 "orf, hypothetical protein" b1138 ymfE 1.02 0.88 0.94 0.87 1.01 0.96 0.95 0.95 "orf, hypothetical protein" b1139 lit 0.95 1.22 0.99 1.03 0.99 0.94 1.05 0.99 phage T4 late gene expression; at locus of e14 element b1140 intE 1.12 1.29 1.45 1.09 1.05 1.02 1.29 1.05 prophage e14 integrase b1141 b1141 0.86 1.12 0.92 1.08 0.75 0.95 0.97 0.93 "orf, hypothetical protein" b1142 ymfH 0.91 1.46 0.99 1.11 0.96 1.16 1.12 1.08 "orf, hypothetical protein" b1143 ymfI 0.95 0.79 1.35 1.04 1.06 1.01 1.03 1.04 "orf, hypothetical protein" b1144 ymfJ 0.96 1.36 1.19 1.16 0.89 1.19 1.17 1.08 "orf, hypothetical protein" b1145 b1145 1.16 1.14 2.22 1.03 1.08 1.01 1.51 1.04 putative phage repressor b1146 b1146 0.92 1.04 1.05 1.10 0.78 0.99 1.00 0.96 "orf, hypothetical protein" b1147 ymfL 1.00 1.14 1.67 0.99 0.88 1.17 1.27 1.01 "orf, hypothetical protein" b1148 ymfM 0.96 1.11 1.01 0.96 0.92 1.04 0.96 "orf, hypothetical protein" b1149 ymfN 0.95 1.08 0.80 0.98 1.02 0.97 0.94 0.99 "orf, hypothetical protein" b1150 ymfR 1.03 1.26 0.84 1.02 1.23 0.94 1.04 1.06 "orf, hypothetical protein" b1151 ymfO 0.97 1.13 1.05 1.15 1.11 1.00 1.05 1.09 "orf, hypothetical protein" b1152 b1152 0.96 0.62 0.92 0.94 0.91 0.98 0.83 0.94 "orf, hypothetical protein" b1153 b1153 1.25 1.01 1.11 1.05 0.84 0.79 1.12 0.89 "orf, hypothetical protein" b1154 ycfK 0.90 1.05 0.94 0.98 1.03 0.98 0.98 "orf, hypothetical protein" b1155 b1155 1.03 1.48 1.06 0.90 0.96 0.93 1.19 0.93 "orf, hypothetical protein" b1156 ycfA 1.10 1.24 1.47 1.02 0.94 0.94 1.27 0.97 "orf, hypothetical protein" b1157 b1157 0.92 1.26 0.94 1.05 0.85 1.04 1.04 0.98 putative tail fiber protein b1158 pin 1.04 0.92 1.19 0.98 0.99 0.92 1.05 0.96 inversion of adjacent DNA; at locus of e14 element b1159 mcrA 0.93 1.40 1.56 1.07 0.82 0.89 1.30 0.93 restriction of DNA at 5-methylcytosine residues; at locus of e14 element b1160 ycgW 0.60 0.92 1.00 1.10 1.04 0.74 0.84 0.96 "orf, hypothetical protein" b1161 ycgX 0.96 0.88 0.84 0.89 0.85 0.89 0.89 0.88 "orf, hypothetical protein" b1162 ycgE 1.07 1.26 0.86 1.01 1.31 1.17 1.06 1.16 putative transcriptional regulator b1163 b1163 1.06 1.23 1.25 1.15 1.11 1.12 1.18 1.13 "orf, hypothetical protein" b1164 ycgZ 1.19 1.18 1.75 1.18 1.35 1.04 1.37 1.19 "orf, hypothetical protein" b1165 ymgA 1.18 1.24 3.03 1.16 1.03 1.13 1.82 1.11 "orf, hypothetical protein" b1166 ymgB 0.91 1.11 1.64 1.15 0.88 1.07 1.22 1.03 "orf, hypothetical protein" b1167 ymgC 0.91 1.32 0.94 0.99 0.97 1.11 0.97 "orf, hypothetical protein" b1168 b1168 1.08 1.31 2.38 1.15 1.08 1.20 1.59 1.14 putative proteases b1169 b1169 0.98 1.24 1.03 1.03 0.94 1.12 1.08 1.03 putative ATP-binding component of a transport system b1170 b1170 1.03 1.26 1.08 1.00 0.97 0.94 1.12 0.97 putative part of putative ATP-binding component of a transport system b1171 b1171 1.05 0.90 0.94 0.83 0.86 0.80 0.96 0.83 "orf, hypothetical protein" b1172 b1172 1.02 0.99 0.65 0.88 0.88 0.92 0.89 0.89 "orf, hypothetical protein" b1173 b1173 0.93 1.03 1.15 0.95 0.86 0.95 1.04 0.92 "orf, hypothetical protein" b1174 minE 0.72 0.90 0.85 0.86 1.02 0.81 0.91 "cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation" b1175 minD 0.86 0.71 0.95 0.98 1.06 0.78 1.00 "cell division inhibitor, a membrane ATPase, activates minC" b1176 minC 0.69 0.64 1.01 1.35 1.05 0.67 1.14 "cell division inhibitor, inhibits ftsZ ring formation" b1177 ycgJ 1.05 1.24 1.15 1.03 0.80 0.90 1.15 0.91 "orf, hypothetical protein" b1178 ycgK 0.80 0.18 0.77 1.08 0.98 0.49 0.94 "orf, hypothetical protein" b1179 ycgL 1.21 0.94 1.19 0.83 2.06 1.10 1.11 1.33 "orf, hypothetical protein" b1180 b1180 1.00 0.96 0.98 1.21 1.11 1.11 0.98 1.14 putative isomerase b1181 ycgN 1.05 1.36 1.14 1.18 0.97 1.25 1.18 1.13 "orf, hypothetical protein" b1182 hlyE 1.13 1.68 1.37 0.97 1.09 0.90 1.39 0.99 hemolysin E b1183 umuD 0.89 1.36 1.03 0.88 0.99 0.90 1.09 0.92 SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC b1184 umuC 1.26 0.93 0.89 0.91 1.01 1.09 0.94 SOS mutagenesis and repair b1185 dsbB 0.93 0.99 1.18 1.00 1.02 1.03 1.03 1.02 reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. b1186 nhaB 1.02 1.40 1.03 0.96 1.05 1.20 1.15 1.07 "Na+/H+ antiporter, pH independent" b1187 fadR 1.23 1.18 1.33 0.82 1.02 1.09 1.25 0.98 "negative regulator for fad regulon, and positive activator of fabA" b1188 ycgB 2.05 2.17 1.64 1.56 0.91 2.08 1.95 1.52 putative sporulation protein b1189 dadA 1.10 0.84 1.27 1.24 1.11 1.25 1.07 1.20 D-amino acid dehydrogenase subunit b1190 dadX 0.95 0.84 1.01 1.20 0.85 1.18 0.93 1.08 "alanine racemase 2, catabolic" b1191 b1191 1.06 1.14 1.16 1.02 0.98 1.21 1.12 1.07 "orf, hypothetical protein" b1192 b1192 0.96 0.89 1.32 1.14 1.09 1.01 1.06 1.08 "orf, hypothetical protein" b1193 mltE 0.94 0.89 1.30 1.07 1.01 1.07 1.04 1.05 murein transglycosylase E b1194 ycgR 0.93 1.14 1.25 1.17 0.98 1.15 1.11 1.10 "orf, hypothetical protein" b1195 ymgE 1.11 1.38 1.67 1.05 0.93 1.04 1.39 1.01 "orf, hypothetical protein" b1196 ycgY 0.98 2.24 1.15 1.07 0.94 1.61 1.05 "orf, hypothetical protein" b1197 treA 1.08 0.95 1.37 1.62 1.46 1.02 1.48 "trehalase, periplasmic" b1198 ycgC 0.81 0.93 0.78 1.26 1.06 0.85 0.84 1.06 putative PTS system enzyme I b1199 b1199 1.94 0.79 0.58 1.12 0.89 0.78 1.10 0.93 putative dihydroxyacetone kinase (EC 2.7.1.2) b1200 b1200 0.89 0.65 0.60 1.15 1.03 0.68 0.71 0.95 putative dihydroxyacetone kinase (EC 2.7.1.2) b1201 b1201 1.15 0.96 0.75 1.11 0.90 1.36 0.95 1.12 putative sensor-type regulator b1202 b1202 1.03 1.21 1.43 0.94 0.72 0.88 1.22 0.85 putative adhesion and penetration protein b1203 ychF 0.77 0.56 0.72 0.73 0.90 0.88 0.68 0.84 putative GTP-binding protein b1204 pth 0.91 0.78 0.74 1.11 0.92 1.09 0.81 1.04 peptidyl-tRNA hydrolase b1205 ychH 1.18 1.07 1.39 1.13 1.00 0.99 1.21 1.04 "orf, hypothetical protein" b1206 ychM 1.19 1.12 0.97 1.21 0.98 1.16 1.05 "orf, hypothetical protein" b1207 prsA 0.92 0.92 0.74 0.90 0.76 0.92 0.80 phosphoribosylpyrophosphate synthetase b1208 ychB 1.05 0.80 0.95 1.08 1.16 0.93 0.93 1.06 "orf, hypothetical protein" b1209 hemM 0.82 0.66 1.01 0.96 0.89 0.74 0.95 "an enzyme in main pathway of synthesis of 5-aminolevulinate, possibly glutamyl-tRNA dehydrogenase" b1210 hemA 1.09 0.80 1.64 0.94 1.15 1.10 1.18 1.06 enzyme in alternate path of synthesis of 5-aminolevulinate b1211 prfA 0.89 1.04 1.25 0.96 1.16 0.96 1.06 1.03 peptide chain release factor RF-1 b1212 hemK 0.98 0.93 1.15 1.02 0.98 0.82 1.02 0.94 possible protoporphyrinogen oxidase b1213 b1213 1.05 0.94 0.93 1.05 1.07 0.84 0.97 0.99 "orf, hypothetical protein" b1214 ychA 0.95 1.01 0.97 1.14 0.91 0.95 0.98 1.00 "orf, hypothetical protein" b1215 kdsA 0.85 0.72 0.72 0.85 0.99 1.08 0.76 0.97 2-dehydro-3-deoxyphosphooctulonate aldolase b1216 chaA 0.77 0.76 0.77 0.53 0.84 0.76 0.77 0.71 sodium-calcium/proton antiporter b1217 chaB 0.93 1.33 1.02 1.19 1.13 1.25 1.09 1.19 cation transport regulator b1218 chaC 1.71 2.00 4.17 2.01 1.38 1.78 2.63 1.72 cation transport regulator b1219 ychN 0.96 1.05 1.56 0.96 1.02 0.98 1.19 0.99 "orf, hypothetical protein" b1220 ychP 1.19 1.32 1.06 1.09 1.05 0.87 1.19 1.00 putative factor b1221 narL 1.17 1.13 0.72 1.02 1.05 1.16 1.01 1.08 "pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes" b1222 narX 0.92 1.46 1.89 1.01 0.90 1.09 1.42 1.00 "nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator" b1223 narK 1.05 1.29 1.64 1.23 1.04 1.35 1.33 1.21 nitrite extrusion protein b1224 narG 1.25 0.75 1.67 1.09 1.18 1.13 1.22 1.13 "nitrate reductase 1, alpha subunit" b1225 narH 1.28 1.18 1.04 0.85 1.05 1.23 0.98 "nitrate reductase 1, beta subunit" b1226 narJ 0.91 0.82 1.15 1.08 0.99 1.09 0.96 1.05 "nitrate reductase 1, delta subunit, assembly function" b1227 narI 0.98 1.15 0.90 1.17 0.87 1.13 1.01 1.06 "nitrate reductase 1, cytochrome b(NR), gamma subunit" b1228 b1228 1.01 0.65 1.35 1.06 1.16 0.94 1.00 1.05 "orf, hypothetical protein" b1229 tpr 0.92 0.81 1.16 0.99 0.91 0.98 0.96 0.96 a protaminelike protein b1232 purU 0.68 0.50 0.52 0.89 0.93 0.86 0.57 0.89 formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis b1233 ychJ 0.80 0.62 0.82 0.94 1.05 0.91 0.75 0.97 "orf, hypothetical protein" b1234 ychK 1.03 1.01 1.43 1.11 1.13 1.03 1.16 1.09 "orf, hypothetical protein" b1235 hnr 1.47 1.19 1.59 1.76 1.41 1.57 1.42 1.58 Hnr protein b1236 galU 1.08 0.86 1.14 1.08 0.90 1.29 1.03 1.09 glucose-1-phosphate uridylyltransferase b1237 hns 1.27 1.31 1.75 0.79 0.78 1.45 1.44 1.01 "DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator" b1238 tdk 0.91 0.95 1.09 0.88 0.93 0.91 0.98 0.91 thymidine kinase b1239 ychG 1.10 1.00 0.96 0.98 0.91 0.87 1.02 0.92 "orf, hypothetical protein" b1240 b1240 0.92 0.92 0.86 0.94 0.93 0.87 0.90 0.91 "orf, hypothetical protein" b1241 adhE 0.95 1.02 1.42 1.78 1.13 0.99 1.44 CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase b1242 ychE 1.09 1.03 0.68 0.93 putative channel protein b1243 oppA 0.87 0.89 0.43 1.34 1.38 1.09 0.73 1.27 oligopeptide transport; periplasmic binding protein b1244 oppB 0.94 0.99 0.84 1.18 1.07 1.01 0.92 1.09 oligopeptide transport permease protein b1245 oppC 0.86 0.77 0.88 1.13 1.03 1.02 0.84 1.06 homolog of Salmonella oligopeptide transport permease protein b1246 oppD 0.96 1.11 1.30 1.27 1.05 1.15 1.12 1.16 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system b1247 oppF 0.99 0.88 1.27 1.16 0.94 1.13 1.05 1.08 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system b1248 b1248 1.08 1.36 1.05 0.97 1.12 1.01 1.16 1.03 "orf, hypothetical protein" b1249 cls 0.91 1.23 0.97 0.94 0.96 1.07 0.96 "cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity" b1250 kch 1.99 2.35 2.70 1.32 1.60 1.39 2.35 1.44 putative potassium channel protein b1251 yciI 1.02 0.94 1.10 1.07 0.88 1.08 1.02 1.01 "orf, hypothetical protein" b1252 tonB 0.96 1.36 0.90 0.81 1.06 0.94 1.07 0.94 "energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins" b1253 yciA 1.05 1.21 1.96 0.95 1.02 0.99 1.41 0.99 "orf, hypothetical protein" b1254 yciB 0.83 0.88 1.19 1.11 0.96 0.89 0.97 0.99 "orf, hypothetical protein" b1255 yciC 0.99 0.84 1.33 0.87 1.03 0.81 1.05 0.90 "orf, hypothetical protein" b1256 yciD 1.04 1.33 1.08 1.01 0.87 1.04 1.15 0.97 putative outer membrane protein b1257 yciE 0.93 1.15 0.93 0.91 0.93 1.00 "orf, hypothetical protein" b1258 yciF 1.30 2.02 2.63 1.00 0.98 1.00 1.98 0.99 putative structural proteins b1259 yciG 1.60 2.23 2.13 1.10 1.10 0.97 1.99 1.06 "orf, hypothetical protein" b1260 trpA 0.65 0.67 0.38 0.92 0.90 0.76 0.57 0.86 "tryptophan synthase, alpha protein" b1261 trpB 0.61 0.74 0.43 0.98 0.81 0.60 0.59 0.80 "tryptophan synthase, beta protein" b1262 trpC 0.76 0.63 0.41 0.95 0.88 0.74 0.60 0.86 N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase b1263 trpD 0.59 0.68 0.61 0.84 0.82 0.72 0.63 0.79 "anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase" b1264 trpE 0.58 0.67 0.48 0.75 0.76 0.63 0.58 0.71 anthranilate synthase component I b1265 trpL 0.79 0.82 1.03 0.91 0.78 0.91 0.88 0.87 trp operon leader peptide b1266 yciV 1.12 1.11 1.05 0.98 1.04 1.02 1.09 1.01 putative enzymes b1267 yciO 1.02 1.19 1.03 1.16 0.90 0.97 1.08 1.01 "orf, hypothetical protein" b1268 yciQ 1.13 1.23 1.28 0.98 1.05 1.09 1.21 1.04 "orf, hypothetical protein" b1269 yciL 0.91 0.70 1.02 0.97 1.08 0.99 0.88 1.01 "orf, hypothetical protein" b1270 btuR 1.25 1.25 0.85 0.87 1.03 1.02 1.12 0.97 cob(I)alamin adenolsyltransferase b1271 yciK 1.02 0.71 0.95 0.94 0.91 0.87 0.93 putative oxidoreductase b1272 sohB 0.92 0.86 1.35 0.97 1.08 1.07 1.04 1.04 putative protease b1273 yciN 1.21 1.53 1.30 0.95 0.88 0.90 1.35 0.91 "orf, hypothetical protein" b1274 topA 0.82 0.69 0.91 1.04 0.86 1.12 0.81 1.01 "DNA topoisomerase type I, omega protein" b1275 cysB 0.91 0.60 0.85 0.85 1.05 0.84 0.79 0.91 positive transcriptional regulator for cysteine regulon b1276 acnA 0.79 0.70 0.97 1.43 1.15 1.27 0.82 1.28 aconitate hydrase 1 b1277 ribA 0.77 0.79 1.79 0.89 0.90 0.82 1.12 0.87 GTP cyclohydrolase II b1278 pgpB 1.17 1.08 1.35 0.88 1.04 0.98 1.20 0.97 "non-essential phosphatidylglycerophosphate phosphatase, membrane bound" b1279 yciS 1.06 0.97 1.10 0.84 1.08 1.14 1.04 1.02 "orf, hypothetical protein" b1280 yciM 1.02 1.11 1.49 0.93 1.10 1.15 1.21 1.06 putative heat shock protein b1281 pyrF 0.80 0.65 1.27 0.91 0.97 0.94 0.91 0.94 orotidine-5'-phosphate decarboxylase b1282 yciH 0.86 0.79 1.11 0.91 0.81 0.93 0.92 0.88 "orf, hypothetical protein" b1283 osmB 2.19 1.45 1.45 1.27 1.52 1.82 1.41 osmotically inducible lipoprotein b1284 b1284 1.02 0.86 1.18 1.10 0.69 1.00 1.02 0.93 putative DEOR-type transcriptional regulator b1285 yciR 1.42 1.26 0.91 0.95 1.11 0.97 1.20 1.01 "orf, hypothetical protein" b1286 rnb 0.52 0.79 0.83 0.58 0.52 0.73 "RNase II, mRNA degradation" b1287 yciW 0.72 0.60 0.78 0.77 1.33 0.54 0.70 0.88 putative oxidoreductase b1288 fabI 0.91 0.74 0.72 0.81 0.77 0.82 0.77 enoyl-[acyl-carrier-protein] reductase (NADH) b1289 ycjD 1.01 1.14 1.11 1.02 0.86 0.93 1.09 0.94 "orf, hypothetical protein" b1290 sapF 0.93 1.17 1.14 0.90 0.92 0.93 1.08 0.92 putative ATP-binding protein of peptide transport system b1291 sapD 1.07 0.91 0.76 1.01 0.91 1.04 0.91 0.99 putative ATP-binding protein of peptide transport system b1292 sapC 1.13 0.74 1.32 0.96 0.93 0.97 1.06 0.95 homolog of Salmonella peptide transport permease protein b1293 sapB 1.01 0.81 0.99 0.81 0.91 0.91 0.90 homolog of Salmonella peptide transport permease protein b1294 sapA 1.06 0.98 0.85 1.00 1.15 1.05 0.96 1.07 homolog of Salmonella peptide transport periplasmic protein b1295 ymjA 1.05 1.31 0.95 0.98 0.99 0.96 1.10 0.98 "orf, hypothetical protein" b1296 ycjJ 0.94 1.89 1.04 0.99 1.03 1.41 1.02 putative amino acid/amine transport protein b1297 b1297 0.80 1.35 0.94 0.83 0.88 1.08 0.88 putative glutamine synthetase (EC 6.3.1.2) b1298 ycjL 1.08 0.87 1.35 0.97 0.96 1.01 1.10 0.98 probable amidotransferase subunit b1299 ycjC 1.01 0.88 0.88 1.03 1.04 1.12 0.92 1.06 "orf, hypothetical protein" b1300 aldH 0.97 0.88 1.04 1.11 0.94 1.10 0.96 1.05 "aldehyde dehydrogenase, prefers NADP over NAD" b1301 ordL 0.53 0.94 0.83 0.97 1.09 0.96 0.77 1.01 probable oxidoreductase b1302 goaG 1.04 1.16 0.98 1.15 0.98 1.05 1.06 1.06 4-aminobutyrate aminotransferase b1303 pspF 0.96 1.09 0.96 0.97 0.83 0.84 1.00 0.88 psp operon transcriptional activator b1304 pspA 0.90 1.00 1.25 0.99 1.05 0.98 1.05 1.01 "phage shock protein, inner membrane protein" b1305 pspB 0.98 0.80 2.13 1.14 1.06 1.09 1.30 1.10 phage shock protein b1306 pspC 0.96 1.08 1.09 1.14 0.93 1.11 1.04 1.06 phage shock protein: activates phage shock-protein expression b1307 pspD 0.99 1.22 1.25 1.14 0.93 1.01 1.15 1.03 phage shock protein b1308 pspE 1.02 1.11 0.92 1.10 1.03 1.08 1.02 1.07 phage shock protein b1309 ycjM 0.93 0.92 0.83 1.16 1.06 1.10 0.89 1.11 putative polysaccharide hydrolase b1310 b1310 1.29 1.32 1.01 0.98 1.07 1.30 1.02 putative transport periplasmic protein b1311 ycjO 1.52 1.10 0.93 1.07 1.08 1.31 1.03 putative binding-protein dependent transport protein b1312 ycjP 1.24 1.20 0.95 0.96 0.95 1.22 0.95 putative transport system permease protein b1313 ycjQ 0.98 1.24 0.93 1.22 0.86 0.99 1.05 1.02 putative oxidoreductase b1314 b1314 1.02 1.03 0.79 0.90 0.90 1.08 0.95 0.96 putative transient receptor potential locus b1315 ycjS 0.97 1.33 0.95 1.23 1.06 1.17 1.08 1.15 putative dehydrogenase b1316 ycjT 1.32 1.11 1.35 1.05 0.94 1.12 1.26 1.04 "orf, hypothetical protein" b1317 ycjU 1.05 1.47 0.85 1.02 0.94 0.93 1.12 0.96 putative beta-phosphoglucomutase b1318 ycjV 1.10 0.97 1.22 1.15 1.09 1.08 1.10 1.11 putative ATP-binding component of a transport system b1319 ompG 0.87 1.08 1.09 1.11 0.89 0.90 1.01 0.97 outer membrane protein b1320 ycjW 1.04 0.90 1.18 1.07 0.94 1.31 1.04 1.11 putative LACI-type transcriptional regulator b1321 ycjX 0.97 1.06 1.02 1.15 0.93 1.14 1.02 1.07 putative EC 2.1 enzymes b1322 ycjF 1.21 1.04 1.45 1.06 1.08 0.94 1.23 1.03 "orf, hypothetical protein" b1323 tyrR 1.09 0.93 1.20 0.96 1.12 1.16 1.07 1.08 "transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport" b1324 tpx 0.63 0.61 0.67 0.91 0.83 0.62 0.80 thiol peroxidase b1325 ycjG 1.07 1.15 1.18 1.16 1.11 1.17 1.13 1.15 putative muconate cycloisomerase I (EC 5.5.-.-) b1326 ycjI 0.97 1.22 1.10 1.13 1.13 1.06 1.10 1.11 putative carboxypeptidase b1327 b1327 0.68 1.31 0.98 1.11 0.81 0.91 0.99 0.94 "orf, hypothetical protein" b1328 ycjZ 0.86 0.88 1.05 1.10 0.90 1.09 0.93 1.03 putative transcriptional regulator LYSR-type b1329 b1329 1.00 1.06 1.05 0.93 1.06 1.06 1.04 1.02 putative transport periplasmic protein b1330 b1330 1.08 1.26 1.54 1.05 1.04 1.10 1.29 1.06 "orf, hypothetical protein" b1331 trs5_4 0.78 0.68 0.70 1.17 0.94 1.05 0.72 1.05 IS5 transposase b1332 ynaJ 1.05 1.09 0.94 1.13 1.01 0.91 1.03 1.02 "orf, hypothetical protein" b1333 ydaA 0.96 1.21 1.01 0.99 1.01 0.85 1.06 0.95 "orf, hypothetical protein" b1334 fnr 0.98 1.29 0.95 1.03 1.20 1.07 1.07 1.10 "transcriptional regulation of aerobic, anaerobic respiration, osmotic balance" b1335 ogt 1.01 2.32 0.88 1.13 0.84 0.91 1.40 0.96 O-6-alkylguanine-DNA/cysteine-protein methyltransferase b1336 ydaH 1.02 1.09 1.01 1.29 0.97 1.12 1.04 1.13 putative pump protein (transport) b1337 b1337 0.89 1.43 1.05 1.16 0.85 0.81 1.12 0.94 "orf, hypothetical protein" b1338 ydaJ 1.01 1.12 0.80 1.68 1.33 1.72 0.98 1.58 putative aminohydrolase (EC 3.5.1.14) b1339 ydaK 0.89 1.43 0.79 1.18 1.10 1.29 1.04 1.19 putative transcriptional regulator LYSR-type b1340 ydaL 0.99 1.14 0.89 0.99 0.96 0.91 1.01 0.95 "orf, hypothetical protein" b1341 b1341 0.94 1.39 0.99 1.23 0.92 0.86 1.11 1.00 "orf, hypothetical protein" b1342 b1342 1.06 0.84 1.14 1.04 0.88 0.86 1.01 0.93 "orf, hypothetical protein" b1343 dbpA 0.84 1.17 1.18 0.92 0.97 0.90 1.06 0.93 ATP-dependent RNA helicase b1344 ydaO 0.95 0.77 1.92 1.03 0.89 0.82 1.21 0.91 "orf, hypothetical protein" b1345 b1345 0.97 1.16 1.41 1.06 1.05 1.03 1.18 1.05 putative transposase b1346 ydaQ 1.05 1.40 1.03 0.97 0.99 1.02 1.16 0.99 "orf, hypothetical protein" b1347 ydaC 0.98 0.97 1.10 0.82 1.02 0.98 0.98 "orf, hypothetical protein" b1348 lar 0.88 0.80 0.95 1.06 0.96 0.99 0.88 1.00 restriction alleviation and modification enhancement b1349 recT 0.97 1.08 1.14 1.10 0.88 1.21 1.06 1.06 "recombinase, DNA renaturation" b1350 recE 1.03 1.10 1.30 0.94 0.99 1.02 1.14 0.98 "exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific" b1351 racC 0.81 1.33 1.06 1.09 0.98 1.03 1.07 1.03 defective prophage rac; contains recE and oriJ b1352 ydaD 1.02 1.06 1.14 0.99 0.96 0.98 1.07 0.98 "orf, hypothetical protein" b1353 sieB 1.15 1.40 0.96 1.01 0.87 0.96 1.17 0.95 phage superinfection exclusion protein b1354 b1354 1.08 1.05 1.28 1.08 1.07 0.96 1.14 1.04 "orf, hypothetical protein" b1355 b1355 1.04 1.08 0.98 0.99 1.00 0.94 1.03 0.98 "orf, hypothetical protein" b1356 ydaR 0.98 1.08 1.89 1.06 0.93 0.91 1.32 0.97 "orf, hypothetical protein" b1357 ydaS 1.07 1.26 0.94 1.08 1.00 0.93 1.09 1.00 "orf, hypothetical protein" b1358 ydaT 0.73 1.20 1.18 1.06 0.82 0.89 1.04 0.92 "orf, hypothetical protein" b1359 ydaU 1.09 1.13 1.08 1.04 1.01 0.98 1.10 1.01 "orf, hypothetical protein" b1360 b1360 1.26 1.09 0.98 0.93 1.11 1.17 1.01 putative DNA replication factor b1361 ydaW 1.03 1.35 1.25 1.09 1.09 0.92 1.21 1.03 "orf, hypothetical protein" b1362 b1362 0.89 0.83 0.96 0.86 0.96 putative Rac prophage endopeptidase b1363 trkG 1.01 1.37 1.01 0.94 0.90 1.19 0.95 trk system potassium uptake; part of Rac prophage b1364 b1364 1.07 1.09 1.05 1.01 1.01 0.98 1.07 1.00 "orf, hypothetical protein" b1365 b1365 0.84 1.87 1.00 1.05 0.98 0.94 1.24 0.99 "orf, hypothetical protein" b1366 ydaY 0.99 1.46 0.97 1.06 1.01 0.96 1.14 1.01 "orf, hypothetical protein" b1367 b1367 0.90 1.55 1.11 0.99 0.81 0.98 1.19 0.93 "orf, hypothetical protein" b1368 b1368 1.11 1.08 1.96 1.07 0.90 1.07 1.38 1.01 putative alpha helix protein b1369 b1369 0.86 1.69 0.97 0.91 0.88 0.83 1.17 0.87 "orf, hypothetical protein" b1370 trs5_5 0.83 0.55 0.84 1.05 1.07 0.96 0.74 1.03 IS5 transposase b1371 b1371 1.03 0.92 0.88 0.99 1.18 0.93 0.94 1.03 "orf, hypothetical protein" b1372 b1372 1.08 1.20 1.35 1.02 0.92 1.05 1.21 1.00 putative membrane protein b1373 ynaC 1.05 1.55 1.25 0.99 0.99 0.95 1.28 0.98 "orf, hypothetical protein" b1374 b1374 1.17 1.69 1.39 1.00 0.99 1.09 1.42 1.03 putative transposon resolvase b1375 ynaE 0.98 2.45 1.14 1.13 0.94 0.94 1.52 1.00 "orf, hypothetical protein" b1376 ynaF 1.19 1.05 1.72 1.01 1.21 1.13 1.32 1.12 putative filament protein b1377 b1377 1.06 0.91 1.03 1.34 1.15 1.22 1.00 1.24 putative outer membrane protein b1378 ydbK 0.77 0.74 0.93 1.23 1.13 0.93 0.81 1.10 "putative oxidoreductase, Fe-S subunit" b1379 hslJ 1.13 1.61 0.99 0.99 0.97 1.37 0.98 heat shock protein hslJ b1380 ldhA 1.06 1.15 1.67 1.14 1.05 1.13 1.29 1.11 "fermentative D-lactate dehydrogenase, NAD-dependent" b1381 ydbH 1.23 1.23 1.18 0.97 0.87 1.02 1.21 0.95 "orf, hypothetical protein" b1382 ynbE 0.97 1.25 1.03 1.06 0.92 0.92 1.08 0.97 "orf, hypothetical protein" b1383 ydbL 1.12 1.10 1.11 1.00 1.02 0.93 1.11 0.98 "orf, hypothetical protein" b1384 feaR 1.43 1.56 3.13 1.08 0.88 1.07 2.04 1.01 regulatory protein for 2-phenylethylamine catabolism b1385 feaB 1.07 1.11 0.89 1.00 1.11 1.09 1.02 1.07 phenylacetaldehyde dehydrogenase b1386 tynA 1.07 0.98 1.47 1.01 0.97 0.90 1.17 0.96 copper amine oxidase (tyramine oxidase) b1387 maoC 0.98 1.21 1.20 1.03 0.84 0.89 1.13 0.92 putative aldehyde dehydrogenase b1388 ydbO 1.03 1.42 1.18 1.16 1.06 0.98 1.21 1.07 "orf, hypothetical protein" b1389 ynbF 0.67 1.58 0.98 1.11 0.85 0.85 1.08 0.94 "orf, hypothetical protein" b1390 ydbP 1.05 0.95 0.83 1.01 1.00 0.98 0.94 1.00 "orf, hypothetical protein" b1391 b1391 1.05 1.19 1.02 1.17 0.92 0.94 1.09 1.01 "orf, hypothetical protein" b1392 b1392 1.05 1.35 1.01 1.15 0.99 1.18 1.14 1.11 putative oxidoreductase b1393 ydbS 1.09 1.21 0.79 1.02 1.02 0.91 1.03 0.98 putative enzyme b1394 b1394 0.88 0.93 1.02 0.92 0.55 0.91 0.83 putative enzyme b1395 ydbU 1.31 0.92 1.12 0.88 1.02 1.12 1.01 putative enzyme b1396 b1396 0.96 1.11 0.85 0.96 1.00 0.98 0.97 0.98 "orf, hypothetical protein" b1397 b1397 1.10 1.14 1.19 1.13 1.02 1.11 1.14 1.09 putative acyltransferase b1398 b1398 1.07 1.39 1.14 1.11 1.16 1.02 1.20 1.10 "orf, hypothetical protein" b1399 b1399 1.01 1.03 1.06 1.08 0.96 0.89 1.03 0.98 "orf, hypothetical protein" b1400 b1400 0.83 1.26 1.27 1.03 0.86 1.01 1.12 0.97 putative transferase b1401 ydbA_1 1.07 1.21 1.06 1.01 0.91 0.88 1.11 0.93 split orf b1402 yi22_2 1.17 0.89 1.00 1.05 0.90 0.88 1.02 0.94 IS2 hypothetical protein b1403 yi21_2 1.06 1.04 0.85 1.01 1.06 0.98 0.98 1.02 IS2 hypothetical protein b1404 tra8_2 0.75 0.77 0.97 1.06 0.89 1.08 0.83 1.01 IS30 transposase b1405 ydbA_2 1.07 1.01 0.86 1.10 0.92 1.01 0.98 1.01 split orf b1406 ydbC 0.98 0.97 1.20 1.15 1.07 1.05 1.05 1.09 putative dehydrogenase b1407 ydbD 1.01 1.23 1.20 0.98 1.07 0.95 1.15 1.00 "orf, hypothetical protein" b1408 b1408 1.15 1.16 0.91 0.96 0.94 1.16 0.94 probable enzyme b1409 b1409 0.98 1.31 1.08 1.22 0.89 1.02 1.12 1.04 putative phosphatidate cytidiltransferase b1410 b1410 1.10 1.34 1.22 1.11 1.18 0.91 1.22 1.07 "orf, hypothetical protein" b1411 ynbD 1.17 1.23 0.95 0.97 1.03 1.20 0.98 putative enzymes b1412 acpD 0.98 1.18 0.85 0.94 1.07 0.94 1.00 0.98 acyl carrier protein phosphodiesterase b1413 hrpA 0.88 1.04 1.08 1.01 1.14 0.96 1.08 "helicase, ATP-dependent" b1414 ydcF 1.18 0.94 1.12 1.08 0.97 1.00 1.08 1.02 "orf, hypothetical protein" b1415 aldA 0.64 0.27 0.25 1.08 0.84 1.04 0.39 0.99 "aldehyde dehydrogenase, NAD-linked" b1416 gapC_2 0.97 0.88 1.24 1.07 1.29 0.92 1.20 glyceraldehyde-3-phosphate dehydrogenase (second fragment) b1417 gapC_1 0.68 1.18 1.97 1.67 1.45 0.93 1.70 "glyceraldehyde 3-phosphate dehydrogenase C, interrupted" b1418 cybB 0.82 0.83 0.95 1.04 1.10 0.83 1.03 cytochrome b(561) b1419 ydcA 1.00 0.94 0.85 1.01 0.91 0.84 0.93 0.92 "orf, hypothetical protein" b1420 b1420 1.06 1.62 0.90 0.95 1.02 1.13 1.19 1.03 "orf, hypothetical protein" b1421 trg 1.06 1.11 1.22 0.94 0.90 0.96 1.13 0.93 "methyl-accepting chemotaxis protein III, ribose sensor receptor" b1422 b1422 0.83 0.78 0.86 0.97 1.23 0.88 0.82 1.03 putative transcriptional regulator LYSR-type b1423 b1423 0.76 0.99 1.13 0.88 0.89 0.88 0.97 "orf, hypothetical protein" b1424 ydcG 0.99 0.94 1.03 0.96 1.18 0.97 1.06 putative glycoprotein b1425 b1425 1.10 1.46 1.15 1.01 1.03 0.98 1.24 1.01 "orf, hypothetical protein" b1426 ydcH 1.05 2.54 0.97 1.12 0.88 0.89 1.52 0.96 "orf, hypothetical protein" b1427 rimL 1.00 1.24 1.69 1.18 0.94 1.07 1.31 1.06 acetylation of N-terminal serine of 30S ribosomal subunit protein L7; acetyl transferase b1428 b1428 1.02 1.36 2.04 1.17 1.06 1.12 1.47 1.12 "orf, hypothetical protein" b1429 tehA 0.90 1.28 1.15 1.09 0.94 1.08 1.11 1.04 tellurite resistance b1430 tehB 0.92 1.00 0.78 1.08 0.96 1.11 0.90 1.05 tellurite resistance b1431 b1431 1.33 1.71 1.54 1.52 1.45 1.38 1.53 1.45 "orf, hypothetical protein" b1432 b1432 0.99 1.97 1.08 0.92 0.90 1.48 0.97 putative virulence protein b1433 b1433 1.02 1.33 1.39 1.03 1.04 1.21 1.25 1.09 putative membrane transport protein b1434 ydcN 0.83 1.08 0.98 1.01 1.03 0.93 0.96 0.99 "orf, hypothetical protein" b1435 ydcP 0.91 0.82 1.19 0.84 0.88 0.94 0.97 0.89 putative collagenase b1436 b1436 0.83 1.44 1.01 0.93 0.82 0.86 1.09 0.87 "orf, hypothetical protein" b1437 b1437 1.08 1.23 1.09 0.98 0.88 0.90 1.13 0.92 "orf, hypothetical protein" b1438 b1438 1.03 1.52 1.30 1.04 0.96 1.02 1.28 1.01 "orf, hypothetical protein" b1439 b1439 0.99 1.26 1.14 1.04 0.92 0.98 1.13 0.98 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system b1440 b1440 1.87 2.87 2.56 3.23 1.92 2.54 2.43 2.56 putative transport protein b1441 b1441 1.61 1.84 1.67 1.64 1.12 1.48 1.71 1.41 putative ATP-binding component of a transport system b1442 b1442 1.14 1.52 1.61 1.46 1.11 1.30 1.42 1.29 putative transport system permease protein b1443 b1443 1.50 1.72 1.49 1.59 1.24 1.30 1.57 1.38 putative transport system permease protein b1444 b1444 3.37 1.63 3.85 1.73 1.33 1.54 2.95 1.53 putative aldehyde dehydrogenase b1445 b1445 0.97 1.18 1.15 0.99 0.94 0.97 1.10 0.97 "orf, hypothetical protein" b1446 b1446 1.10 1.06 1.43 0.74 1.07 1.12 1.20 0.98 "orf, hypothetical protein" b1447 b1447 0.94 0.99 1.49 0.99 0.89 1.02 1.14 0.97 "orf, hypothetical protein" b1448 b1448 0.91 1.01 1.06 1.22 1.09 1.18 0.99 1.16 putative resistance protein b1449 yncB 1.10 1.42 1.33 1.49 1.11 1.28 1.30 putative oxidoreductase b1450 b1450 0.98 0.83 1.00 0.93 0.90 0.83 0.94 0.89 "orf, hypothetical protein" b1451 b1451 1.16 1.13 1.01 0.91 0.80 1.15 0.91 putative outer membrane receptor for iron transport b1452 b1452 0.81 0.83 0.15 0.56 0.81 0.64 0.60 0.67 putative receptor b1453 ansP 0.92 0.93 0.97 0.98 0.90 1.01 0.94 0.96 L-asparagine permease b1454 b1454 1.06 1.85 1.30 0.93 1.25 1.46 1.16 putative transferase b1455 b1455 1.03 1.45 1.02 0.94 0.84 1.24 0.93 "orf, hypothetical protein" b1456 rhsE 1.10 1.16 1.28 0.97 1.00 0.93 1.18 0.97 rhsE protein in rhs element b1457 ydcD 0.98 1.12 0.97 1.01 0.82 1.05 0.93 "orf, hypothetical protein" b1458 b1458 1.02 1.49 1.06 0.89 0.89 0.91 1.19 0.90 "orf, hypothetical protein" b1459 b1459 1.43 1.06 0.95 1.05 0.93 1.25 0.98 "orf, hypothetical protein" b1460 ydcC 0.96 1.23 1.28 0.84 1.02 1.20 1.16 1.02 putative receptor b1461 ydcE 0.83 0.79 0.99 0.98 0.82 1.07 0.87 0.96 "orf, hypothetical protein" b1462 b1462 1.03 1.28 1.20 1.09 0.90 1.04 1.17 1.01 "orf, hypothetical protein" b1463 b1463 0.98 0.92 1.11 1.25 1.12 1.11 1.00 1.16 putative N-hydroxyarylamine O-acetyltransferase b1464 yddE 0.96 0.96 1.37 1.16 1.00 1.09 1.10 1.08 "orf, hypothetical protein" b1465 narV 1.12 1.05 1.15 1.06 0.89 1.09 1.11 1.01 "cryptic nitrate reductase 2, gamma subunit" b1466 narW 1.15 1.19 1.12 1.05 1.05 1.11 1.15 1.07 "cryptic nitrate reductase 2, delta subunit, assembly function" b1467 narY 1.07 1.45 1.72 1.21 1.11 1.09 1.41 1.14 "cryptic nitrate reductase 2, beta subunit" b1468 narZ 1.32 1.59 1.61 1.44 1.09 1.22 1.51 1.25 "cryptic nitrate reductase 2, alpha subunit" b1469 narU 1.12 1.82 1.52 1.14 1.17 1.47 1.28 nitrite extrusion protein 2 b1470 b1470 0.95 1.80 1.79 1.13 0.96 1.04 1.51 1.04 "orf, hypothetical protein" b1471 b1471 0.97 0.95 0.84 0.99 0.92 0.96 0.92 putative glycoportein b1472 b1472 1.14 0.96 1.00 1.02 0.98 1.05 1.00 putative outer membrane porin protein b1473 yddG 0.85 1.14 1.18 0.90 0.90 1.01 1.06 0.94 "orf, hypothetical protein" b1474 fdnG 0.94 1.07 1.16 0.99 0.85 0.90 1.06 0.91 "formate dehydrogenase-N, nitrate-inducible, alpha subunit" b1475 fdnH 0.99 1.14 1.14 0.99 0.89 0.96 1.09 0.95 "formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit" b1476 fdnI 1.05 1.08 1.00 0.96 0.93 0.84 1.04 0.91 "formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit" b1477 yddM 0.96 1.04 1.39 1.05 0.96 0.98 1.13 1.00 "orf, hypothetical protein" b1478 adhP 1.71 1.79 1.35 2.28 1.99 1.72 1.62 2.00 alcohol dehydrogenase b1479 sfcA 0.65 0.77 1.01 0.67 0.65 0.82 NAD-linked malate dehydrogenase (malic enzyme) b1480 rpsV 2.42 5.04 2.27 2.16 2.71 2.85 3.24 2.57 30S ribosomal subunit protein S22 b1481 b1481 0.96 1.13 1.27 1.24 1.20 1.04 1.12 1.16 "orf, hypothetical protein" b1482 osmC 1.94 2.90 1.43 2.15 1.89 2.94 2.09 2.33 osmotically inducible protein b1483 b1483 2.31 2.62 1.82 1.96 1.60 1.54 2.25 1.70 putative ATP-binding component of a transport system b1484 b1484 1.75 1.73 1.92 2.39 1.71 1.71 1.80 1.94 putative ATP-binding component of a transport system b1485 b1485 1.76 1.90 1.85 1.93 1.35 1.70 1.84 1.66 putative transport protein b1486 b1486 1.70 1.02 2.03 1.44 1.93 1.36 1.80 putative transport system permease protein b1487 b1487 5.58 22.39 25.00 6.04 3.45 3.98 17.66 4.49 putative hemin-binding lipoprotein b1488 b1488 2.76 5.11 9.09 2.74 2.40 2.31 5.65 2.48 "orf, hypothetical protein" b1489 b1489 1.19 1.18 0.99 0.97 0.97 1.19 0.98 putative enzyme b1490 b1490 1.45 1.91 1.41 1.12 1.07 1.05 1.59 1.08 "orf, hypothetical protein" b1491 b1491 1.14 1.01 1.25 0.91 0.87 1.02 1.13 0.93 "orf, hypothetical protein" b1492 xasA 6.84 11.52 5.56 5.02 3.22 4.37 7.97 4.20 "acid sensitivity protein, putative transporter" b1493 gadB 15.81 24.01 4.35 14.72 10.71 10.21 14.72 11.88 glutamate decarboxylase isozyme b1494 pqqL 1.14 0.95 0.84 0.91 1.14 0.90 putative peptidase b1495 yddB 0.95 1.17 0.24 0.81 0.84 0.89 0.79 0.85 "orf, hypothetical protein" b1496 yddA 0.95 1.13 0.53 0.86 0.78 1.00 0.87 0.88 putative ATP-binding component of a transport system b1497 b1497 1.00 1.36 0.93 1.04 0.99 0.94 1.10 0.99 putative enzyme b1498 b1498 0.89 0.90 0.84 1.00 0.98 1.06 0.88 1.01 putative sulfatase b1499 b1499 0.95 1.94 0.90 1.02 0.96 0.90 1.26 0.96 putative ARAC-type regulatory protein b1500 b1500 0.93 1.11 1.08 0.90 0.92 0.91 1.04 0.91 "orf, hypothetical protein" b1501 b1501 0.99 1.26 1.12 1.00 0.88 0.96 1.12 0.95 "putative oxidoreductase, major subunit" b1502 b1502 1.06 1.31 1.03 0.96 0.96 0.98 1.13 0.97 putative adhesin; similar to FimH protein b1503 b1503 1.37 1.00 0.85 0.85 0.85 1.19 0.85 putative fimbrial-like protein b1504 b1504 0.86 0.86 1.06 1.01 0.88 0.71 0.93 0.87 putative fimbrial-like protein b1505 b1505 0.96 1.29 0.97 0.64 0.83 0.79 1.07 0.75 putative outer membrane protein b1506 b1506 0.95 1.23 1.05 1.17 1.00 1.09 1.08 1.09 "orf, hypothetical protein" b1507 hipA 1.03 1.24 1.14 1.05 0.98 1.05 1.14 1.03 "persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator" b1508 hipB 0.84 1.07 1.05 1.10 0.88 1.02 0.99 1.00 persistence to inhibition of murein or DNA biosynthesis; regulatory protein b1509 b1509 1.02 0.75 1.05 0.98 1.07 0.89 1.03 putative ATP-binding component of a transport system and adhesin protein b1510 ydeK 1.04 1.29 1.14 1.09 1.04 1.22 1.16 1.12 "orf, hypothetical protein" b1511 ydeV 0.98 1.19 1.75 0.98 1.02 1.16 1.31 1.05 putative kinase b1512 ydeW 0.97 1.07 1.28 1.04 0.92 1.07 1.11 1.01 "putative transcriptional regulator, sorC family" b1513 b1513 1.06 0.98 0.78 0.98 1.05 1.01 0.94 1.01 putative ATP-binding component of a transport system b1514 ydeY 1.31 1.03 1.05 0.93 1.11 1.17 1.03 putative transport system permease protein b1515 ydeZ 1.13 1.16 1.19 1.05 0.92 1.12 1.16 1.03 putative transport system permease protein b1516 b1516 1.01 1.45 1.18 1.02 1.03 1.05 1.21 1.03 putative LACI-type transcriptional regulator b1517 yneB 0.93 0.97 0.83 1.08 0.99 0.96 0.91 1.01 "orf, hypothetical protein" b1518 b1518 0.90 1.35 1.18 1.08 0.89 1.01 1.14 0.99 "orf, hypothetical protein" b1519 b1519 1.35 1.28 1.30 1.17 1.13 1.03 1.31 1.11 putative enzyme b1520 b1520 0.78 0.93 1.05 0.99 0.84 0.86 0.96 "orf, hypothetical protein" b1521 uxaB 1.05 1.07 0.96 1.06 1.07 1.06 1.03 1.06 altronate oxidoreductase b1522 b1522 1.23 1.11 0.94 1.13 1.07 1.17 1.05 "orf, hypothetical protein" b1523 b1523 0.99 0.95 1.52 0.94 0.93 0.90 1.15 0.92 "orf, hypothetical protein" b1524 yneH 0.91 1.04 0.91 1.06 1.02 1.01 0.95 1.03 putative glutaminase b1525 b1525 1.08 1.14 0.93 1.09 1.09 1.20 1.05 1.13 putative aldehyde dehydrogenase b1526 yneJ 0.96 1.11 1.02 0.99 1.02 1.09 1.03 1.03 putative transcriptional regulator LYSR-type b1527 b1527 1.18 1.30 1.05 0.97 0.99 0.96 1.18 0.97 "orf, hypothetical protein" b1528 ydeA 1.19 1.60 2.08 1.38 1.27 1.23 1.62 1.29 putative resistance / regulatory protein b1529 ydeB 0.99 1.14 1.19 1.02 0.81 0.93 1.11 0.92 "orf, hypothetical protein" b1530 marR 1.05 0.94 1.14 1.13 0.87 1.09 1.04 1.03 multiple antibiotic resistance protein; repressor of mar operon b1531 marA 0.86 0.93 0.96 1.09 1.00 0.96 0.92 1.02 multiple antibiotic resistance; transcriptional activator of defense systems b1532 marB 0.96 0.94 1.27 1.07 1.02 0.98 1.06 1.02 multiple antibiotic resistance protein b1533 ydeD 1.10 1.09 1.41 0.95 1.03 1.00 1.20 0.99 "orf, hypothetical protein" b1534 ydeF 0.97 1.24 1.14 1.01 1.06 1.08 1.12 1.05 putative transport protein b1535 ydeH 0.88 0.98 1.75 1.15 1.03 1.05 1.20 1.08 "orf, hypothetical protein" b1536 ydeI 0.92 1.92 1.56 0.97 0.88 1.00 1.47 0.95 "orf, hypothetical protein" b1537 ydeJ 0.88 1.63 1.23 1.17 0.99 1.11 1.25 1.09 "orf, hypothetical protein" b1538 dcp 1.01 0.89 0.68 1.01 0.98 0.94 0.86 0.98 dipeptidyl carboxypeptidase II b1539 ydfG 1.44 1.38 2.13 1.32 1.61 1.44 1.65 1.46 putative oxidoreductase b1540 ydfH 0.89 1.59 1.08 0.96 1.07 1.24 1.04 "orf, hypothetical protein" b1541 b1541 0.89 1.04 1.10 1.03 0.99 1.03 1.01 1.02 "orf, hypothetical protein" b1542 ydfI 1.17 0.96 1.04 0.91 0.90 0.89 1.06 0.90 putative oxidoreductase b1543 b1543 0.99 1.26 1.19 1.09 1.05 1.08 1.15 1.07 putative transport protein b1544 ydfK 0.90 2.45 0.87 1.03 0.88 1.02 1.41 0.98 "orf, hypothetical protein" b1545 b1545 0.93 1.26 2.00 1.05 0.98 0.97 1.40 1.00 "orf, hypothetical protein" b1546 ydfM 0.88 1.19 1.20 1.14 1.00 1.03 1.09 1.06 "orf, hypothetical protein" b1547 b1547 0.97 1.07 0.87 0.83 1.04 0.89 0.97 0.92 "orf, hypothetical protein" b1548 nohA 1.03 1.18 1.37 1.02 0.79 0.95 1.19 0.92 homolog of Qin prophage packaging protein NU1 b1549 ydfO 1.04 1.05 1.03 0.95 0.89 0.92 1.04 0.92 "orf, hypothetical protein" b1550 b1550 1.04 2.14 2.38 0.96 0.88 0.80 1.85 0.88 "orf, hypothetical protein" b1551 b1551 0.97 0.97 1.00 0.97 0.85 0.98 0.98 0.93 "orf, hypothetical protein" b1552 cspI 0.97 1.07 0.95 0.90 0.96 0.89 1.00 0.92 cold shock-like protein b1553 b1553 0.98 1.14 1.11 0.98 1.00 0.84 1.08 0.94 "orf, hypothetical protein" b1554 b1554 0.98 1.14 0.85 0.90 0.96 1.00 0.99 0.95 putative lysozyme b1555 b1555 1.09 0.90 0.87 0.93 0.90 0.95 0.95 0.93 "orf, hypothetical protein" b1556 b1556 0.91 1.26 1.05 1.05 0.88 0.93 1.07 0.95 "orf, hypothetical protein" b1557 cspB 1.08 1.09 0.81 1.04 1.07 1.03 0.99 1.05 cold shock protein; may affect transcription b1558 cspF 0.91 1.65 1.33 1.09 0.90 1.11 1.30 1.03 cold shock protein b1559 b1559 0.96 1.13 1.49 1.08 0.92 1.05 1.19 1.02 "orf, hypothetical protein" b1560 b1560 1.04 0.96 1.32 1.04 1.08 1.14 1.11 1.09 "orf, hypothetical protein" b1561 rem 0.90 2.09 0.88 1.12 0.94 1.04 1.29 1.03 "orf, hypothetical protein" b1562 relF 0.95 1.85 0.81 0.95 0.88 0.95 1.20 0.93 polypeptide destructive to membrane potential b1563 relE 0.92 1.30 1.59 1.04 0.99 1.00 1.27 1.01 "orf, hypothetical protein" b1564 relB 1.12 1.33 1.09 1.18 0.99 1.15 1.18 1.11 negative regulator of translation b1565 b1565 1.02 1.50 1.45 1.05 0.84 1.05 1.32 0.98 "orf, hypothetical protein" b1566 flxA 0.93 1.10 1.01 1.05 0.97 0.99 1.01 1.00 "orf, hypothetical protein" b1567 b1567 0.88 1.24 0.95 1.04 1.10 0.95 1.02 1.03 "orf, hypothetical protein" b1568 b1568 1.03 1.14 1.10 0.91 0.92 1.04 1.09 0.96 "orf, hypothetical protein" b1569 dicC 1.06 1.77 1.61 1.05 0.98 1.00 1.48 1.01 regulator of dicB b1570 dicA 0.96 1.09 1.89 0.95 1.15 0.90 1.31 1.00 regulator of dicB b1571 ydfA 0.92 1.57 1.28 0.98 0.79 0.88 1.26 0.88 "orf, hypothetical protein" b1572 ydfB 1.08 0.94 0.71 0.95 1.05 0.94 0.91 0.98 "orf, hypothetical protein" b1573 ydfC 1.04 1.29 1.06 0.97 0.92 0.82 1.13 0.90 "orf, hypothetical protein" b1575 dicB 0.98 0.97 0.79 1.08 1.13 0.96 0.91 1.06 inhibition of cell division b1576 ydfD 1.04 1.40 0.87 0.92 0.97 0.89 1.10 0.93 "orf, hypothetical protein" b1577 ydfE 0.99 1.16 1.08 0.98 0.89 0.91 1.08 0.93 "orf, hypothetical protein" b1578 b1578 1.11 1.04 0.96 1.01 1.00 0.91 1.04 0.97 "orf, hypothetical protein" b1579 b1579 0.97 1.44 1.43 1.01 0.88 0.92 1.28 0.94 putative transposase b1580 rspB 0.99 1.13 0.96 1.20 0.99 1.29 1.03 1.16 starvation sensing protein b1581 rspA 1.04 0.97 0.87 1.12 1.09 1.26 0.96 1.16 starvation sensing protein b1582 b1582 0.73 0.91 1.02 0.93 0.88 0.82 0.94 "orf, hypothetical protein" b1583 b1583 0.73 0.74 0.67 0.88 0.81 0.93 0.71 0.87 "orf, hypothetical protein" b1584 speG 0.81 1.00 0.87 1.04 0.81 0.97 spermidine N1-acetyltransferase b1585 ynfC 0.92 1.27 1.25 1.08 1.04 1.08 1.15 1.07 "orf, hypothetical protein" b1586 b1586 1.03 1.23 1.12 1.19 1.19 1.16 1.13 1.18 "orf, hypothetical protein" b1587 b1587 0.91 0.86 1.04 1.19 0.98 1.04 0.94 1.07 "putative oxidoreductase, major subunit" b1588 b1588 1.10 0.99 1.28 1.01 0.99 0.72 1.12 0.91 "putative oxidoreductase, major subunit" b1589 b1589 0.99 1.00 1.19 0.94 1.27 1.00 1.13 "putative oxidoreductase, Fe-S subunit" b1590 b1590 0.85 1.03 1.11 0.80 0.96 0.87 1.00 0.88 putative DMSO reductase anchor subunit b1591 b1591 0.91 1.02 1.11 1.05 0.90 1.01 1.01 0.99 putative oxidoreductase component b1592 b1592 1.04 0.94 1.61 1.17 0.71 1.37 1.20 1.08 putative chloride channel b1593 b1593 1.00 1.13 1.41 1.03 0.93 1.07 1.18 1.01 "orf, hypothetical protein" b1594 mlc 0.95 0.69 0.77 0.87 0.94 1.02 0.80 0.94 putative NAGC-like transcriptional regulator b1595 ynfL 1.42 1.79 3.74 0.93 1.42 2.15 putative transcriptional regulator LYSR-type b1596 ynfM 1.29 1.81 3.70 2.02 1.97 2.06 2.27 2.02 putative transport protein b1597 asr 4.36 1.45 1.04 0.99 1.06 2.90 1.03 acid shock protein b1598 b1598 1.01 1.28 1.45 1.20 1.14 1.11 1.25 1.15 "orf, hypothetical protein" b1599 b1599 1.14 1.11 0.94 0.87 0.86 1.02 1.06 0.92 possible chaperone b1600 b1600 0.93 1.01 1.20 0.85 0.79 0.82 1.05 0.82 possible chaperone b1601 b1601 1.15 0.77 0.79 0.89 0.92 1.01 0.90 0.94 putative transport protein b1602 pntB 0.52 0.25 0.32 0.47 0.63 0.59 0.36 0.56 "pyridine nucleotide transhydrogenase, beta subunit" b1603 pntA 0.23 0.26 0.49 0.75 0.42 0.25 0.55 "pyridine nucleotide transhydrogenase, alpha subunit" b1604 b1604 1.00 1.01 1.09 0.72 0.88 0.96 1.03 0.85 "orf, hypothetical protein" b1605 b1605 1.06 1.16 0.95 0.85 1.07 1.11 0.96 putative arginine/ornithine antiporter b1606 ydgB 1.10 1.19 1.39 0.94 1.07 1.08 1.23 1.03 putative oxidoreductase b1607 ydgC 0.90 1.02 0.90 1.06 0.94 0.96 0.97 "orf, hypothetical protein" b1608 rstA 1.29 1.46 1.32 0.90 1.27 0.90 1.36 1.02 response transcriptional regulatory protein (RstB sensor) b1609 rstB 1.11 1.09 1.12 1.03 1.14 1.01 1.11 1.06 sensor histidine protein kinase (RstA regulator) b1610 tus 0.97 1.06 0.78 1.02 0.94 0.87 0.94 0.94 DNA-binding protein; inhibition of replication at Ter sites b1611 fumC 0.94 1.30 1.07 0.92 0.78 1.12 0.92 fumarase C= fumarate hydratase Class II; isozyme b1612 fumA 0.63 0.37 1.06 0.81 0.76 0.81 0.69 0.79 fumarase A = fumarate hydratase Class I; aerobic isozyme b1613 manA 0.89 0.75 1.02 0.92 1.03 1.00 0.89 0.98 mannose-6-phosphate isomerase b1614 ydgA 1.24 0.99 0.88 1.03 1.55 1.04 1.04 1.21 "orf, hypothetical protein" b1615 uidC 1.06 1.35 1.27 1.08 0.98 1.23 1.03 membrane-associated protein b1616 uidB 1.10 1.15 1.35 1.27 0.87 1.12 1.20 1.09 glucuronide permease b1617 uidA 1.07 1.23 1.18 1.03 1.13 1.10 1.16 1.09 beta-D-glucuronidase b1618 uidR 1.02 1.03 1.33 1.14 0.90 1.05 1.13 1.03 repressor for uid operon b1619 hdhA 0.97 0.88 0.96 0.94 0.90 0.93 0.93 "NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids" b1620 malI 0.97 0.95 0.97 1.00 1.17 0.96 1.05 repressor of malX and Y genes b1621 malX 0.98 1.19 1.14 1.08 1.03 1.05 1.10 1.05 "PTS system, maltose and glucose-specific II ABC" b1622 malY 0.95 1.19 1.11 1.00 0.96 1.01 1.08 0.99 "enzyme that may degrade or block biosynthesis of endogenous mal inducer, probably aminotrasferase" b1623 add 0.99 0.78 1.25 1.07 1.03 0.97 1.01 1.02 adenosine deaminase b1624 b1624 1.28 1.01 1.37 1.03 1.28 1.14 "orf, hypothetical protein" b1625 b1625 1.02 2.16 1.56 1.07 1.04 1.10 1.58 1.07 "orf, hypothetical protein" b1626 b1626 1.12 1.47 1.69 0.96 0.98 1.22 1.43 1.05 "orf, hypothetical protein" b1627 b1627 0.90 0.91 1.43 0.94 1.09 0.91 1.08 0.98 "orf, hypothetical protein" b1628 b1628 0.90 1.06 0.97 1.04 0.94 1.01 0.98 1.00 "orf, hypothetical protein" b1629 b1629 0.89 0.79 0.86 0.90 0.94 0.86 0.85 0.90 putative membrane protein b1630 ydgO 0.96 1.14 0.75 0.85 1.06 0.93 0.95 0.95 "orf, hypothetical protein" b1631 b1631 0.90 1.14 0.90 1.02 0.99 0.95 0.98 0.99 "orf, hypothetical protein" b1632 ydgQ 0.94 1.23 0.79 1.00 1.04 1.02 0.99 1.02 "orf, hypothetical protein" b1633 nth 0.91 0.88 0.67 0.94 1.04 1.01 0.82 1.00 endonuclease III; specific for apurinic and/or apyrimidinic sites b1634 ydgR 1.02 1.04 1.09 1.04 0.81 1.07 1.05 0.97 putative transport protein b1635 gst 1.29 1.33 1.64 1.19 1.17 1.18 1.42 1.18 glutathionine S-transferase b1636 pdxY 0.89 0.78 0.85 0.92 1.03 0.84 0.84 0.93 pyridoxal kinase 2 / pyridoxine kinase b1637 tyrS 0.86 0.74 1.00 0.73 0.81 0.83 0.87 0.79 tyrosine tRNA synthetase b1638 pdxH 0.86 0.94 0.97 0.97 0.92 0.89 0.92 0.93 pyridoxinephosphate oxidase b1639 ydhA 0.96 0.76 1.03 0.99 0.78 0.95 0.92 0.91 "orf, hypothetical protein" b1640 b1640 1.03 1.20 0.98 1.11 1.14 1.12 1.07 1.12 "orf, hypothetical protein" b1641 slyB 0.99 0.96 1.43 0.82 0.86 1.14 1.13 0.94 putative outer membrane protein b1642 slyA 1.15 1.04 1.75 1.01 1.17 1.20 1.31 1.13 transcriptional regulator for cryptic hemolysin b1643 b1643 1.15 1.29 1.20 1.08 0.81 1.10 1.21 1.00 "orf, hypothetical protein" b1644 b1644 0.99 1.13 1.10 0.93 1.03 0.95 1.07 0.97 putative membrane protein b1645 b1645 1.11 1.08 1.33 0.93 0.90 1.00 1.17 0.94 "orf, hypothetical protein" b1646 sodC 1.42 1.84 1.54 1.49 1.17 1.13 1.60 1.26 superoxide dismutase precursor (Cu-Zn) b1647 b1647 1.02 1.09 1.16 1.12 1.06 1.09 1.09 1.09 "orf, hypothetical protein" b1648 b1648 0.99 1.43 1.08 1.04 1.04 1.27 1.17 1.12 "orf, hypothetical protein" b1649 b1649 0.90 0.92 1.27 1.03 1.15 1.03 1.03 1.07 "orf, hypothetical protein" b1650 nemA 1.05 1.10 1.01 1.05 0.99 0.93 1.05 0.99 N-ethylmaleimide reductase b1651 gloA 0.91 1.04 1.32 0.97 1.02 1.10 1.09 1.03 lactoylglutathione lyase b1652 rnt 1.09 1.04 0.79 0.93 1.04 1.09 0.97 1.02 "RNase T, degrades tRNA" b1653 lhr 0.97 0.96 1.16 1.00 1.01 0.98 1.03 1.00 member of ATP-dependent helicase superfamily II b1654 ydhD 1.20 1.10 2.08 1.02 1.69 1.01 1.46 1.24 "orf, hypothetical protein" b1655 ydhO 0.88 1.08 1.39 1.15 1.09 1.00 1.12 1.08 putative lipoprotein b1656 sodB 0.54 0.47 5.00 1.04 0.94 0.96 2.00 0.98 "superoxide dismutase, iron" b1657 b1657 1.06 1.45 1.61 1.05 1.05 1.06 1.37 1.05 putative transport protein b1658 purR 0.97 0.80 1.03 0.78 0.89 0.93 0.93 0.87 "transcriptional repressor for pur regulon, glyA, glnB, prsA, speA" b1659 ydhB 1.00 1.36 1.08 1.03 1.03 1.07 1.15 1.04 putative transcriptional regulator LYSR-type b1660 ydhC 1.12 1.03 1.18 1.12 0.92 1.09 1.11 1.04 putative transport protein b1661 cfa 2.15 2.35 2.86 3.14 2.64 3.03 2.45 2.94 cyclopropane fatty acyl phospholipid synthase b1662 ribE 1.07 1.00 1.43 1.01 0.93 0.94 1.17 0.96 "riboflavin synthase, alpha chain" b1663 ydhE 1.02 1.05 1.16 1.04 0.97 0.88 1.08 0.96 putative transport protein b1664 b1664 1.04 1.14 1.18 1.30 1.18 1.16 1.12 1.21 possible enzyme b1667 b1667 1.16 1.40 1.45 1.05 0.80 1.11 1.34 0.99 "orf, hypothetical protein" b1668 b1668 1.17 1.23 0.86 1.39 1.39 1.37 1.09 1.38 "orf, hypothetical protein" b1669 b1669 1.04 1.19 1.20 0.99 0.89 1.05 1.14 0.98 "orf, hypothetical protein" b1670 ydhU 1.05 1.24 1.37 1.07 1.16 1.04 1.22 1.09 "orf, hypothetical protein" b1671 b1671 0.98 1.23 1.30 1.15 0.82 0.93 1.17 0.97 "putative oxidoreductase, Fe-S subunit" b1672 b1672 0.95 1.26 1.09 1.07 1.02 1.00 1.10 1.03 "orf, hypothetical protein" b1673 b1673 0.92 1.19 0.94 0.88 0.88 0.89 1.02 0.88 "orf, hypothetical protein" b1674 b1674 0.93 1.41 1.09 1.06 0.96 0.94 1.14 0.99 "putative oxidoreductase, Fe-S subunit" b1675 b1675 0.89 1.08 0.94 0.74 0.85 0.98 0.97 0.86 "orf, hypothetical protein" b1676 pykF 0.99 0.97 0.88 0.97 0.96 0.87 0.95 0.93 "pyruvate kinase I (formerly F), fructose stimulated" b1677 lpp 1.16 0.88 0.57 1.59 1.95 1.02 1.37 murein lipoprotein b1678 ynhG 1.20 1.35 0.99 1.69 1.37 1.24 1.18 1.43 "orf, hypothetical protein" b1679 ynhA 0.84 1.16 0.52 1.07 0.96 0.98 0.84 1.00 "orf, hypothetical protein" b1680 b1680 1.53 1.17 0.28 1.02 1.06 0.95 0.99 1.01 "orf, hypothetical protein" b1681 ynhC 1.21 1.41 0.29 1.07 0.97 0.87 0.97 0.97 "orf, hypothetical protein" b1682 ynhD 1.16 1.43 0.19 1.08 1.07 1.03 0.93 1.06 putative ATP-binding component of a transport system b1683 ynhE 1.26 1.20 0.28 1.09 1.01 0.95 0.91 1.02 "orf, hypothetical protein" b1684 ydiC 1.19 1.26 0.26 1.08 0.94 1.02 0.90 1.01 "orf, hypothetical protein" b1685 b1685 1.29 1.32 1.56 1.22 1.11 1.05 1.39 1.13 "orf, hypothetical protein" b1686 b1686 0.84 0.84 1.03 0.96 0.99 0.89 0.90 0.95 "orf, hypothetical protein" b1687 ydiJ 0.69 0.76 0.99 1.06 1.00 0.74 0.81 0.93 putative oxidase b1688 b1688 0.99 1.24 1.33 0.92 0.89 1.02 1.19 0.94 "orf, hypothetical protein" b1689 b1689 1.05 1.70 1.02 1.05 0.97 0.94 1.26 0.99 "orf, hypothetical protein" b1690 b1690 1.07 1.52 1.19 1.15 0.81 1.08 1.26 1.01 putative transport system permease protein b1691 b1691 1.03 0.99 0.75 0.98 0.92 1.04 0.92 0.98 putative amino acid/amine transport protein b1692 ydiB 0.92 1.53 1.14 0.97 0.98 0.96 1.20 0.97 putative oxidoreductase b1693 aroD 0.92 1.04 1.11 1.01 0.97 1.02 1.02 1.00 3-dehydroquinate dehydratase b1694 ydiF 1.14 1.28 1.06 1.06 0.99 1.04 1.16 1.03 putative enzyme b1695 b1695 1.09 1.11 0.85 0.95 1.00 0.98 1.02 0.98 putative oxidoreductase b1696 b1696 0.91 0.87 0.83 1.03 0.96 1.01 0.87 1.00 putative ARAC-type regulatory protein b1697 ydiQ 0.90 1.20 1.12 0.94 0.90 0.96 1.07 0.93 putative transport protein b1698 ydiR 1.02 1.28 0.98 1.04 0.85 0.98 1.09 0.96 putative flavoprotein b1699 ydiS 1.00 1.09 1.28 0.98 0.86 1.01 1.12 0.95 flavoprotein; probably electron transport b1700 ydiT 0.90 1.34 0.53 1.02 0.79 0.97 0.92 0.93 "orf, hypothetical protein" b1701 ydiD 0.95 1.12 1.23 1.08 0.83 1.03 1.10 0.98 putative ligase/synthetase b1702 ppsA 1.23 1.39 1.62 1.83 1.46 1.31 1.64 phosphoenolpyruvate synthase b1703 ydiA 1.03 1.52 1.61 1.06 1.05 1.11 1.39 1.07 "orf, hypothetical protein" b1704 aroH 0.78 0.97 0.88 0.88 0.84 0.88 0.87 "3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible)" b1705 ydiE 0.87 1.15 0.88 0.86 0.84 0.85 0.97 0.85 "orf, hypothetical protein" b1706 b1706 0.84 0.81 0.91 1.00 0.91 0.82 0.94 "orf, hypothetical protein" b1707 b1707 0.98 1.07 0.68 0.99 0.88 0.96 0.91 0.94 "orf, hypothetical protein" b1708 nlpC 1.10 1.07 1.43 1.16 0.83 1.05 1.20 1.01 lipoprotein b1709 btuD 1.06 1.28 0.75 0.73 1.48 1.12 1.03 1.11 ATP-binding component of vitamin B12 transport system b1710 btuE 1.45 1.58 0.95 1.34 1.27 1.15 1.33 1.25 vitamin B12 transport b1711 btuC 1.03 1.04 0.92 0.87 0.92 0.99 1.00 0.93 vitamin B12 transport permease protein b1712 himA 1.35 1.04 1.23 1.29 1.06 1.38 1.21 1.24 "integration host factor (IHF), alpha subunit; site specific recombination" b1713 pheT 0.62 0.47 0.71 0.54 0.71 "phenylalanine tRNA synthetase, beta-subunit" b1714 pheS 0.67 0.49 0.75 0.83 0.72 0.58 0.77 "phenylalanine tRNA synthetase, alpha-subunit" b1715 pheM 0.93 0.67 0.82 1.02 0.81 0.84 0.81 0.89 phenylalanyl-tRNA synthetase (pheST) operon leader peptide b1716 rplT 0.89 0.53 1.16 0.52 0.66 1.20 0.86 0.79 "50S ribosomal subunit protein L20, and regulator" b1717 rpmI 0.60 1.19 0.59 0.63 1.11 0.90 0.78 50S ribosomal subunit protein A b1718 infC 0.82 0.74 1.15 0.94 1.08 1.27 0.90 1.10 protein chain initiation factor IF-3 b1719 thrS 0.75 0.49 0.65 1.11 1.00 0.75 0.63 0.95 threonine tRNA synthetase b1720 b1720 0.85 1.22 0.53 1.07 0.84 0.95 0.87 0.95 "orf, hypothetical protein" b1721 b1721 0.95 0.92 1.05 1.02 1.10 0.93 1.06 "orf, hypothetical protein" b1722 b1722 0.88 1.13 1.39 1.00 0.91 1.02 1.13 0.98 "orf, hypothetical protein" b1723 pfkB 0.94 0.58 1.30 1.16 1.10 0.76 1.19 6-phosphofructokinase II; suppressor of pfkA b1724 b1724 1.62 1.60 1.30 1.90 1.60 1.54 1.51 1.68 "orf, hypothetical protein" b1725 b1725 1.23 1.28 1.43 1.32 0.85 1.20 1.31 1.12 "orf, hypothetical protein" b1726 b1726 1.15 1.46 1.79 0.96 1.42 1.18 1.47 1.19 "orf, hypothetical protein" b1727 yniC 0.83 1.01 1.04 0.90 0.93 0.81 0.96 0.88 putative phosphatase b1728 b1728 1.03 1.28 1.11 1.02 0.93 0.92 1.14 0.96 "orf, hypothetical protein" b1729 b1729 0.69 0.52 1.20 0.75 0.86 0.85 0.80 0.82 part of a kinase b1730 b1730 0.96 1.14 1.15 0.93 0.90 0.85 1.08 0.89 "orf, hypothetical protein" b1731 b1731 0.95 1.52 1.14 0.99 0.93 1.02 1.20 0.98 "orf, hypothetical protein" b1732 katE 1.82 1.87 1.00 3.27 2.60 1.75 1.56 2.54 catalase; hydroperoxidase HPII(III) b1733 ydjC 0.94 0.93 1.02 0.98 1.04 1.02 0.96 1.01 "orf, hypothetical protein" b1734 celF 1.15 1.26 1.23 1.00 1.14 1.15 1.21 1.10 phospho-beta-glucosidase; cryptic b1735 celD 1.03 1.16 1.59 1.02 1.11 1.06 1.26 1.06 negative transcriptional regulator of cel operon b1736 celC 0.98 1.04 1.12 0.96 0.94 0.99 1.05 0.96 "PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin" b1737 celB 1.26 1.05 1.15 1.04 0.89 1.12 1.15 1.02 "PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin" b1738 celA 1.06 1.76 0.97 0.97 1.01 1.05 1.26 1.01 "PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin" b1739 osmE 1.29 1.37 1.50 2.47 2.13 1.33 2.03 activator of ntrL gene b1740 nadE 1.19 1.61 1.08 1.37 1.46 1.26 1.29 1.36 "NAD synthetase, prefers NH3 over glutamine" b1741 b1741 0.92 1.24 0.88 1.05 0.97 0.92 1.01 0.98 putative excinuclease subunit b1742 b1742 0.97 1.15 1.33 0.98 0.97 1.04 1.15 1.00 "orf, hypothetical protein" b1743 spy 0.93 1.13 1.15 0.91 1.00 1.00 1.07 0.97 periplasmic protein related to spheroblast formation b1744 ydjS 1.44 1.57 3.70 1.24 1.10 1.38 2.24 1.24 "orf, hypothetical protein" b1745 b1745 1.27 1.99 2.44 1.52 1.29 1.18 1.90 1.33 "orf, hypothetical protein" b1746 b1746 1.79 3.13 1.30 1.11 1.23 2.46 1.21 putative aldehyde dehydrogenase b1747 b1747 1.96 2.12 3.03 1.38 1.07 1.37 2.37 1.27 "orf, hypothetical protein" b1748 cstC 2.50 2.51 5.00 1.81 1.41 1.75 3.34 1.66 acetylornithine delta-aminotransferase b1749 xthA 1.03 0.76 0.96 0.93 0.93 1.08 0.92 0.98 exonuclease III b1750 ydjX 1.00 1.06 1.11 1.04 1.00 1.00 1.06 1.01 "orf, hypothetical protein" b1751 ydjY 0.91 1.25 1.37 1.00 0.83 1.06 1.18 0.96 "orf, hypothetical protein" b1752 ydjZ 1.12 1.23 1.04 0.98 1.01 1.06 1.13 1.02 "orf, hypothetical protein" b1753 ynjA 1.08 1.33 1.12 0.94 0.75 1.02 1.18 0.90 "orf, hypothetical protein" b1754 b1754 0.96 1.29 1.32 1.06 1.04 1.01 1.19 1.04 "orf, hypothetical protein" b1755 b1755 0.95 0.97 0.96 0.86 0.94 1.03 0.96 0.94 putative transport system permease protein b1756 b1756 1.03 1.43 1.35 1.01 0.98 1.03 1.27 1.01 putative ATP-binding component of a transport system b1757 b1757 0.91 1.02 0.99 0.97 0.87 1.01 0.97 0.95 putative thiosulfate sulfur transferase b1758 b1758 0.97 1.06 0.91 1.08 0.85 0.93 0.98 0.95 putative cytochrome oxidase b1759 b1759 1.01 0.94 1.64 1.02 1.01 1.17 1.20 1.07 "orf, hypothetical protein" b1760 b1760 0.97 1.09 1.12 1.02 1.00 0.99 1.06 1.00 "orf, hypothetical protein" b1761 gdhA 1.00 0.92 1.67 2.18 1.50 1.40 1.20 1.69 NADP-specific glutamate dehydrogenase b1762 b1762 0.99 1.26 1.56 1.05 0.88 0.97 1.27 0.97 "orf, hypothetical protein" b1763 topB 0.84 0.79 0.65 1.03 1.00 0.91 0.76 0.98 DNA topoisomerase III b1764 selD 0.91 0.74 0.62 1.03 0.90 0.97 0.76 0.97 "selenophosphate synthase, H(2)Se added to acrylyl-tRNA" b1765 ydjA 0.87 0.75 0.50 0.96 0.99 0.92 0.71 0.96 "orf, hypothetical protein" b1766 sppA 1.03 1.08 1.22 0.97 1.00 1.07 1.11 1.01 "protease IV, a signal peptide peptidase" b1767 ansA 0.90 0.74 0.95 1.15 0.86 0.82 0.99 cytoplasmic L-asparaginase I b1768 ydjB 0.91 0.72 0.80 0.92 0.93 0.99 0.81 0.95 "orf, hypothetical protein" b1769 ydjE 0.94 1.36 1.27 0.96 0.85 0.92 1.19 0.91 putative transport protein b1770 b1770 1.23 1.02 1.52 0.90 1.10 0.94 1.26 0.98 putative DEOR-type transcriptional regulator b1771 b1771 0.89 1.06 0.95 0.97 0.94 1.14 0.97 1.02 "orf, hypothetical protein" b1772 b1772 1.26 0.83 0.91 1.01 1.00 1.05 0.97 putative kinase b1773 b1773 0.83 1.28 1.06 0.92 0.99 1.06 0.99 putative aldolase b1774 ydjJ 1.14 1.16 0.79 1.01 0.94 0.97 1.03 0.97 putative oxidoreductase b1775 b1775 0.92 1.28 1.30 0.91 1.06 1.01 1.17 0.99 putative transport protein b1776 b1776 1.38 1.05 0.94 0.92 0.99 1.22 0.95 putative oxidoreductase b1777 b1777 0.63 0.83 1.43 0.89 1.05 1.00 0.96 0.98 "orf, hypothetical protein" b1778 yeaA 0.84 0.68 1.32 0.99 1.02 0.90 0.95 0.97 "orf, hypothetical protein" b1779 gapA 0.60 0.50 0.46 0.85 0.63 0.87 0.52 0.78 glyceraldehyde-3-phosphate dehydrogenase A b1780 yeaD 0.58 0.50 0.50 0.93 0.88 0.84 0.53 0.88 "orf, hypothetical protein" b1781 b1781 0.91 1.41 0.65 1.02 0.97 1.10 0.99 1.03 putative an aldehyde reductase b1782 yeaF 0.62 0.48 0.51 0.68 1.01 0.62 0.54 0.77 "orf, hypothetical protein" b1783 yeaG 4.15 4.43 1.79 5.20 5.79 4.54 3.46 5.18 "orf, hypothetical protein" b1784 yeaH 3.45 2.59 2.33 3.49 3.29 3.03 2.79 3.27 "orf, hypothetical protein" b1785 yeaI 0.99 1.85 1.56 0.94 0.85 1.00 1.47 0.93 "orf, hypothetical protein" b1786 yeaJ 0.99 0.99 0.88 1.15 0.95 0.99 0.99 "orf, hypothetical protein" b1787 yeaK 0.94 1.06 1.20 0.93 0.89 0.98 1.07 0.93 "orf, hypothetical protein" b1788 b1788 0.97 0.93 0.78 1.05 0.92 0.89 0.89 0.95 "orf, hypothetical protein" b1789 yeaL 0.99 1.19 0.87 0.96 0.84 0.98 1.02 0.93 "orf, hypothetical protein" b1790 yeaM 1.16 1.33 1.23 0.91 1.08 1.03 1.24 1.01 putative ARAC-type regulatory protein b1791 yeaN 1.01 0.87 0.95 0.88 0.74 0.87 0.94 0.83 putative amino acid/amine transport protein b1792 yeaO 1.00 1.19 1.59 0.90 0.96 1.05 1.26 0.97 "orf, hypothetical protein" b1793 yoaF 0.91 1.01 1.16 0.92 0.97 1.06 1.03 0.98 "orf, hypothetical protein" b1794 yeaP 0.78 0.69 1.23 0.81 1.02 0.94 0.90 0.92 "orf, hypothetical protein" b1795 yeaQ 1.32 1.65 2.27 1.84 1.75 2.32 1.75 1.97 "orf, hypothetical protein" b1796 yoaG 0.92 1.00 0.90 1.05 0.91 1.03 0.94 1.00 "orf, hypothetical protein" b1797 yeaR 1.04 1.30 0.95 1.10 0.85 1.01 1.10 0.99 "orf, hypothetical protein" b1798 yeaS 0.98 1.44 0.93 0.95 0.88 1.08 1.12 0.97 "orf, hypothetical protein" b1799 yeaT 1.11 1.18 1.32 1.08 0.93 1.17 1.20 1.06 putative transcriptional regulator LYSR-type b1800 yeaU 0.99 1.35 1.27 1.09 0.91 1.08 1.20 1.03 putative tartrate dehydrogenase b1801 yeaV 0.92 1.16 1.04 1.06 1.08 1.04 1.06 putative transport protein b1802 yeaW 0.96 0.99 1.25 0.99 0.99 1.02 1.07 1.00 "orf, hypothetical protein" b1803 yeaX 1.01 1.10 1.14 0.88 1.03 1.01 1.08 0.97 putative diogenase beta subunit b1804 rnd 0.96 0.79 1.08 0.97 0.90 0.91 0.94 0.93 "RNase D, processes tRNA precursor" b1805 fadD 0.92 1.24 0.94 1.01 1.01 1.01 1.03 1.01 "acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase" b1806 b1806 0.94 0.92 1.22 0.93 0.94 0.94 1.03 0.94 putative outer membrane protein b1807 yeaZ 0.84 1.04 0.81 0.87 0.88 0.90 0.90 0.88 "orf, hypothetical protein" b1808 b1808 0.90 1.08 0.81 1.01 0.90 0.93 0.93 0.95 putative enzyme b1809 b1809 0.88 0.57 1.04 0.71 0.87 0.96 0.83 0.85 "orf, hypothetical protein" b1810 b1810 2.05 2.54 3.57 1.26 1.14 1.27 2.72 1.22 "orf, hypothetical protein" b1811 b1811 0.95 0.94 1.10 0.91 0.92 0.87 1.00 0.90 "orf, hypothetical protein" b1812 pabB 1.10 0.91 1.19 1.02 1.06 0.93 1.07 1.00 "p-aminobenzoate synthetase, component I" b1813 yeaB 1.21 1.18 0.99 1.02 0.87 0.94 1.13 0.94 "orf, hypothetical protein" b1814 sdaA 0.99 1.06 1.45 1.23 1.06 1.13 1.17 1.14 L-serine deaminase b1815 b1815 1.06 1.33 0.94 1.12 1.06 1.20 1.04 "orf, hypothetical protein" b1816 yoaE 0.91 1.30 1.12 0.88 1.04 1.03 1.11 0.98 putative transport protein b1817 manX 0.42 0.32 0.38 0.36 0.44 0.42 0.37 0.41 "PTS enzyme IIAB, mannose-specific" b1818 manY 0.60 0.30 0.43 0.47 0.61 0.55 0.44 0.54 "PTS enzyme IIC, mannose-specific" b1819 manZ 0.66 0.43 0.50 0.52 0.74 0.69 0.53 0.65 "PTS enzyme IID, mannose-specific" b1820 b1820 0.88 0.86 0.88 0.96 0.93 0.93 0.87 0.94 "orf, hypothetical protein" b1821 b1821 1.04 1.26 1.16 1.06 0.94 1.06 1.15 1.02 "orf, hypothetical protein" b1822 yebH 0.93 1.01 1.45 1.13 1.05 1.08 1.13 1.09 putative enzyme b1823 cspC 1.47 1.13 1.75 0.75 1.34 1.78 1.45 1.29 cold shock protein b1824 b1824 1.49 0.81 2.26 2.05 1.49 1.71 "orf, hypothetical protein" b1825 b1825 0.97 1.34 2.17 0.95 1.05 1.05 1.49 1.02 "orf, hypothetical protein" b1826 b1826 0.93 1.09 1.41 0.88 0.83 1.14 1.14 0.95 "orf, hypothetical protein" b1827 b1827 1.04 1.22 1.89 1.03 0.91 1.18 1.38 1.04 putative regulator b1828 b1828 1.18 1.08 1.43 0.99 1.03 1.17 1.23 1.06 putative transport protein b1829 htpX 0.90 0.93 1.09 0.72 1.03 1.02 0.97 0.92 "heat shock protein, integral membrane protein" b1830 prc 0.90 0.70 0.78 1.01 1.61 1.14 0.79 1.25 carboxy-terminal protease for penicillin-binding protein 3 b1831 yebJ 0.81 0.57 0.85 0.88 0.89 0.94 0.74 0.90 "orf, hypothetical protein" b1832 b1832 0.90 0.81 0.91 1.14 1.05 1.14 0.87 1.11 "orf, hypothetical protein" b1833 b1833 1.14 1.06 1.28 1.00 1.05 1.11 1.16 1.05 "orf, hypothetical protein" b1834 b1834 1.17 1.12 1.14 0.95 0.97 1.05 1.14 0.99 "orf, hypothetical protein" b1835 yebU 0.96 0.99 0.93 0.99 1.12 1.04 0.96 1.05 putative nucleolar proteins b1836 b1836 2.20 5.95 2.94 1.96 1.11 1.55 3.70 1.54 "orf, hypothetical protein" b1837 b1837 1.22 1.41 1.52 1.05 0.90 1.01 1.38 0.99 "orf, hypothetical protein" b1838 pphA 1.03 1.32 1.72 0.97 0.94 1.05 1.36 0.99 "protein phosphatase 1 modulates phosphoproteins, signals protein misfolding" b1839 b1839 0.86 0.80 1.01 0.96 0.93 0.91 0.89 0.93 "orf, hypothetical protein" b1840 b1840 0.88 1.00 0.49 0.91 0.99 1.02 0.79 0.97 putative resistance protein b1841 b1841 0.64 0.52 0.44 0.57 0.83 0.64 0.53 0.68 "orf, hypothetical protein" b1842 holE 1.07 1.56 0.95 1.09 1.06 1.32 1.03 "DNA polymerase III, theta subunit" b1843 b1843 0.96 1.31 1.23 0.99 1.11 1.08 1.17 1.06 "orf, hypothetical protein" b1844 b1844 0.96 1.20 1.09 1.12 0.98 0.88 1.08 0.99 "orf, hypothetical protein" b1845 ptrB 1.05 1.22 1.17 1.14 1.05 1.18 protease II b1846 yebE 0.94 1.16 1.12 1.23 0.96 1.29 1.07 1.16 "orf, hypothetical protein" b1847 yebF 1.02 1.23 1.32 1.16 0.92 1.32 1.19 1.13 "orf, hypothetical protein" b1848 yebG 0.90 0.83 1.27 1.03 0.88 1.23 1.00 1.05 "orf, hypothetical protein" b1849 purT 0.59 0.60 0.85 0.80 0.76 0.72 0.68 0.76 phosphoribosylglycinamide formyltransferase 2 b1850 eda 0.79 0.83 1.02 0.98 0.94 0.81 0.98 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase b1851 edd 1.01 0.94 1.06 0.97 0.87 1.01 1.00 0.95 6-phosphogluconate dehydratase b1852 zwf 0.93 0.90 0.78 1.09 1.13 1.08 0.87 1.10 glucose-6-phosphate dehydrogenase b1853 yebK 0.88 0.72 1.04 0.87 0.89 1.00 0.88 0.92 "orf, hypothetical protein" b1854 pykA 0.77 0.65 1.13 1.11 0.84 0.71 1.03 "pyruvate kinase II, glucose stimulated" b1855 msbB 1.03 1.10 1.39 0.97 0.92 0.92 1.17 0.94 "suppressor of htrB, heat shock protein" b1856 yebA 1.06 1.02 0.23 1.00 1.01 1.07 0.77 1.03 "orf, hypothetical protein" b1857 yebL 0.74 0.61 0.08 0.73 1.03 1.01 0.48 0.92 putative adhesin b1858 yebM 0.91 1.36 0.37 0.77 0.92 0.92 0.88 0.87 putative ATP-binding component of a transport system b1859 yebI 1.11 1.36 0.58 0.95 1.02 0.93 1.02 0.97 "orf, hypothetical protein" b1860 ruvB 1.10 0.96 1.16 1.08 1.04 0.94 1.07 1.02 Holliday junction helicase subunit A; branch migration; repair b1861 ruvA 0.80 1.20 0.99 1.10 1.17 1.00 1.09 Holliday junction helicase subunit B; branch migration; repair b1862 yebB 1.10 1.26 1.08 1.00 0.87 1.01 1.15 0.96 "orf, hypothetical protein" b1863 ruvC 0.90 0.76 0.72 0.83 0.87 0.96 0.79 0.89 Holliday junction nuclease; resolution of structures; repair b1864 yebC 0.80 0.79 0.66 0.80 0.88 0.78 0.75 0.82 "orf, hypothetical protein" b1865 ntpA 0.81 0.69 0.71 0.92 0.92 0.73 0.74 0.86 dATP pyrophosphohydrolase b1866 aspS 0.75 0.62 0.45 0.88 0.91 0.59 0.61 0.79 aspartate tRNA synthetase b1867 yecD 1.03 1.21 0.79 1.04 1.13 0.96 1.01 1.04 "orf, hypothetical protein" b1868 yecE 0.97 1.23 0.78 0.99 1.01 0.91 0.99 0.97 "orf, hypothetical protein" b1869 yecN 0.96 0.86 1.30 1.02 0.98 0.92 1.04 0.97 "orf, hypothetical protein" b1870 yecO 0.86 0.90 0.81 0.98 1.01 0.94 0.86 0.98 "orf, hypothetical protein" b1871 yecP 0.88 1.21 0.85 0.91 0.97 0.97 0.98 0.95 putative enzyme b1872 bisZ 0.94 1.03 1.06 1.01 1.16 0.99 1.08 biotin sulfoxide reductase 2 b1873 yecK 0.99 1.29 0.84 1.01 1.02 0.92 1.04 0.98 putative cytochrome C-type protein b1874 cutC 1.16 1.72 0.93 0.93 1.15 1.44 1.00 copper homeostasis protein b1875 yecM 1.01 1.04 0.87 1.15 0.97 1.00 0.97 1.04 "orf, hypothetical protein" b1876 argS 0.72 0.54 0.96 0.96 1.11 0.85 0.74 0.97 arginine tRNA synthetase b1877 yecT 0.96 1.28 1.05 1.07 0.86 1.14 1.10 1.02 "orf, hypothetical protein" b1878 flhE 0.89 1.11 0.87 1.13 0.91 1.01 0.96 1.02 flagellar protein b1879 flhA 1.09 1.32 1.05 1.10 1.14 1.20 1.10 flagellar biosynthesis; possible export of flagellar proteins b1880 flhB 1.07 1.07 1.27 1.16 0.96 1.15 1.14 1.09 putative part of export apparatus for flagellar proteins b1881 cheZ 1.05 0.92 1.14 1.01 0.92 1.00 1.04 0.98 chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator b1882 cheY 0.98 1.24 1.09 1.06 1.01 1.10 1.04 chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components b1883 cheB 1.11 1.08 1.01 0.96 0.94 1.07 1.07 0.99 response regulator for chemotaxis (cheA sensor); protein methylesterase b1884 cheR 1.26 0.89 1.04 0.91 0.94 1.08 0.96 response regulator for chemotaxis; protein glutamate methyltransferase b1885 tap 1.26 0.93 0.96 0.97 1.12 1.09 1.02 "methyl-accepting chemotaxis protein IV, peptide sensor receptor" b1886 tar 1.03 0.96 1.08 1.06 0.88 0.87 1.02 0.94 "methyl-accepting chemotaxis protein II, aspartate sensor receptor" b1887 cheW 1.01 1.02 1.09 1.05 1.06 0.98 1.04 1.03 positive regulator of CheA protein activity b1888 cheA 1.11 1.15 1.33 1.01 0.91 0.98 1.20 0.97 sensory transducer kinase between chemo- signal receptors and CheB and CheY b1889 motB 1.12 1.32 0.99 1.11 1.10 1.22 1.07 "enables flagellar motor rotation, linking torque machinery to cell wall" b1890 motA 1.01 1.10 0.99 1.07 0.88 1.06 1.03 1.00 proton conductor component of motor; no effect on switching b1891 flhC 0.92 1.19 0.95 1.15 1.03 0.98 1.02 1.05 regulator of flagellar biosynthesis acting on class 2 operons; transcription initiation factor b1892 flhD 1.08 1.41 0.71 1.12 1.09 1.11 1.07 1.11 "regulator of flagellar biosynthesis, acting on class 2 operons; transcriptional initiation factor" b1893 insB_5 0.93 0.86 0.88 1.15 0.94 1.06 0.89 1.05 IS1 protein InsB b1894 insA_5 0.92 2.01 0.94 1.08 0.87 1.10 1.29 1.02 IS1 protein InsA b1895 yecG 1.00 0.83 1.18 1.18 0.91 1.26 1.00 1.12 putative regulator b1896 otsA 1.57 1.23 1.75 1.76 1.63 1.52 1.52 1.64 trehalose-6-phosphate synthase b1897 otsB 1.45 1.40 2.13 1.65 1.84 1.44 1.66 1.64 "trehalose-6-phosphate phophatase, biosynthetic" b1898 araH_2 1.01 1.14 1.52 1.09 0.88 1.10 1.22 1.02 "high-affinity L-arabinose transport system; membrane protein, fragment 2" b1899 araH_1 0.96 1.19 1.47 0.97 1.00 0.95 1.21 0.97 "high-affinity L-arabinose transport system; membrane protein, fragment 1" b1900 araG 1.15 0.96 1.39 1.10 1.16 1.18 1.17 1.15 ATP-binding component of high-affinity L-arabinose transport system b1901 araF 1.11 1.08 1.10 1.15 0.93 1.14 1.10 1.07 L-arabinose-binding periplasmic protein b1902 yecI 0.84 0.88 1.02 0.93 0.85 1.13 0.91 0.97 ferritin-like protein b1903 b1903 0.82 1.07 1.22 0.96 0.98 0.92 1.04 0.95 "orf, hypothetical protein" b1904 b1904 0.93 1.10 1.11 1.21 0.97 1.21 1.05 1.13 "orf, hypothetical protein" b1905 ftn 0.88 0.72 1.02 1.18 1.01 1.00 0.87 1.06 cytoplasmic ferritin (an iron storage protein) b1906 yecH 1.12 1.00 0.94 1.03 0.93 0.88 1.02 0.95 "orf, hypothetical protein" b1907 tyrP 1.11 1.22 1.02 1.03 1.08 1.05 1.12 1.05 tyrosine-specific transport system b1908 yecA 1.09 0.97 1.23 0.95 0.89 1.02 1.10 0.95 "orf, hypothetical protein" b1912 pgsA 0.98 0.91 0.97 0.97 0.92 0.97 0.95 0.95 "phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase" b1913 uvrC 0.97 1.16 0.78 0.95 1.21 0.96 0.97 1.04 "excinuclease ABC, subunit C; repair of UV damage to DNA" b1914 uvrY 0.92 0.82 0.90 0.83 1.17 1.07 0.88 1.02 putative 2-component transcriptional regulator b1915 yecF 0.92 1.04 1.11 0.88 0.90 0.90 1.02 0.89 "orf, hypothetical protein" b1916 sdiA 1.05 0.82 0.74 1.08 0.85 0.91 0.87 0.95 transcriptional regulator of ftsQAZ gene cluster b1917 yecC 0.91 0.99 0.82 0.99 0.89 0.96 0.91 0.95 putative ATP-binding component of a transport system b1918 yecS 0.92 0.74 0.67 0.95 0.94 0.87 0.78 0.92 putative transport system permease protein (former yecC) b1919 yedO 0.92 0.77 0.63 1.05 1.05 0.93 0.77 1.01 putative 1-aminocyclopropane-1-carboxylate deaminase b1920 fliY 0.79 0.77 0.69 0.57 0.88 0.83 0.75 0.76 putative periplasmic binding transport protein b1921 fliZ 1.19 1.11 1.30 1.23 0.96 1.01 1.20 1.07 "orf, hypothetical protein" b1922 fliA 1.04 1.38 0.93 1.46 1.17 1.16 1.12 1.26 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons b1923 fliC 1.24 1.08 1.47 1.09 1.07 1.20 1.26 1.12 "flagellar biosynthesis; flagellin, filament structural protein" b1924 fliD 1.16 0.97 0.88 1.18 1.06 1.05 1.00 1.10 flagellar biosynthesis; filament capping protein; enables filament assembly b1925 fliS 0.97 0.94 1.11 1.12 1.24 0.96 1.16 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity) b1926 fliT 1.03 1.09 1.18 1.04 0.98 0.99 1.10 1.00 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity) b1927 amyA 1.48 1.41 1.59 1.95 1.58 1.50 1.49 1.68 cytoplasmic alpha-amylase b1928 yedD 1.12 1.84 0.83 0.90 0.89 1.05 1.26 0.95 "orf, hypothetical protein" b1929 yedE 0.63 0.77 0.83 0.81 0.88 0.96 0.74 0.88 putative transport system permease protein b1930 yedF 0.88 0.86 0.77 1.13 0.89 0.89 0.84 0.97 "orf, hypothetical protein" b1931 yedK 0.96 1.11 1.11 1.22 1.03 1.21 1.06 1.15 "orf, hypothetical protein" b1932 yedL 2.35 7.24 7.69 2.90 1.87 2.20 5.76 2.32 "orf, hypothetical protein" b1933 b1933 1.03 0.93 1.14 1.13 0.86 1.22 1.03 1.07 "orf, hypothetical protein" b1934 yedN 0.90 1.23 0.88 0.96 0.91 0.90 1.00 0.92 "orf, hypothetical protein" b1935 yedM 1.02 1.66 1.30 1.06 0.92 0.92 1.33 0.97 "orf, hypothetical protein" b1936 b1936 0.92 1.11 1.03 1.17 1.04 1.01 1.02 1.07 "orf, hypothetical protein" b1937 fliE 1.00 1.02 1.15 1.11 1.05 1.01 1.10 "flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junction" b1938 fliF 1.09 0.99 0.92 1.43 1.12 1.42 1.00 1.32 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein b1939 fliG 0.99 1.06 0.97 1.34 0.99 1.29 1.01 1.21 "flagellar biosynthesis, component of motor switching and energizing, enabling rotation and determining its direction" b1940 fliH 1.08 1.30 1.04 1.30 1.05 1.10 1.14 1.15 flagellar biosynthesis; export of flagellar proteins? b1941 fliI 0.90 0.95 1.36 1.20 1.09 0.93 1.22 flagellum-specific ATP synthase b1942 fliJ 1.08 1.08 1.08 1.24 1.05 1.30 1.08 1.20 flagellar fliJ protein b1943 fliK 1.13 0.90 1.32 1.13 1.02 1.17 1.12 1.11 flagellar hook-length control protein b1944 fliL 1.01 1.29 1.09 1.22 1.04 1.18 1.13 1.15 flagellar biosynthesis b1945 fliM 1.05 1.11 1.05 1.20 1.15 1.12 1.07 1.16 "flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction" b1946 fliN 1.12 1.14 0.94 1.13 0.93 1.14 1.07 1.07 "flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction" b1947 fliO 1.02 0.86 0.82 0.99 0.90 0.85 0.90 0.91 flagellar biosynthesis b1948 fliP 1.13 0.83 0.88 0.97 0.84 1.07 0.95 0.96 flagellar biosynthesis b1949 fliQ 2.15 0.87 1.07 0.91 0.91 1.51 0.96 flagellar biosynthesis b1950 fliR 0.92 0.95 1.03 1.04 1.07 0.94 1.05 flagellar biosynthesis b1951 rcsA 1.19 1.27 1.07 0.88 0.94 1.23 0.96 "positive regulator for ctr capsule biosynthesis, positive transcription factor" b1952 dsrB 1.05 1.32 1.54 1.13 1.06 1.29 1.30 1.16 "orf, hypothetical protein" b1953 b1953 1.25 3.37 1.61 1.15 1.04 1.09 2.08 1.09 "orf, hypothetical protein" b1955 b1955 1.10 1.62 1.45 1.08 0.98 1.12 1.39 1.06 "orf, hypothetical protein" b1956 b1956 1.20 1.12 1.43 1.18 1.38 1.08 1.25 1.21 "orf, hypothetical protein" b1957 b1957 1.49 2.01 1.54 1.16 1.23 1.52 1.68 1.30 "orf, hypothetical protein" b1958 yedI 1.20 1.46 1.32 1.02 1.17 1.06 1.33 1.08 "orf, hypothetical protein" b1959 yedA 1.11 1.23 0.93 0.99 0.88 1.02 1.09 0.96 putative transmembrane subunit b1960 vsr 1.09 1.21 1.10 0.93 1.06 1.07 1.13 1.02 "DNA mismatch endonuclease, patch repair protein" b1961 dcm 0.67 0.85 0.85 0.97 1.08 0.76 0.97 DNA cytosine methylase b1962 yedJ 1.11 1.16 1.25 1.09 0.99 1.17 1.17 1.08 "orf, hypothetical protein" b1963 b1963 1.05 1.79 1.19 1.05 1.08 1.09 1.34 1.07 "orf, hypothetical protein" b1964 b1964 0.97 1.40 1.41 1.21 0.97 1.19 1.26 1.12 putative outer membrane protein b1965 b1965 0.93 1.26 1.25 1.18 0.88 1.12 1.15 1.06 "orf, hypothetical protein" b1966 b1966 1.00 0.75 1.10 1.31 0.97 1.31 0.95 1.20 putative outer membrane protein b1967 yedU 1.08 1.35 1.23 1.75 1.33 1.70 1.22 1.59 "orf, hypothetical protein" b1968 yedV 0.90 0.89 1.12 0.85 0.87 0.99 0.97 0.90 putative 2-component sensor protein b1969 yedW 0.81 0.77 1.09 0.88 0.91 0.96 0.89 0.92 putative 2-component transcriptional regulator b1970 b1970 0.95 1.45 1.06 1.05 0.98 1.13 1.15 1.05 "orf, hypothetical protein" b1971 b1971 1.15 1.23 1.27 1.03 0.84 0.93 1.22 0.93 putative reductase b1972 b1972 0.98 1.19 0.70 1.15 1.09 1.19 0.96 1.14 "orf, hypothetical protein" b1973 b1973 1.04 1.36 0.01 0.58 1.03 0.85 0.80 0.82 "orf, hypothetical protein" b1974 yodB 1.10 1.30 0.64 0.98 0.97 0.99 1.01 0.98 putative cytochrome b1976 b1976 0.91 1.08 1.47 0.94 0.96 0.96 1.15 0.95 "orf, hypothetical protein" b1978 b1978 1.16 1.18 0.97 1.03 1.16 1.06 putative factor b1979 b1979 0.96 1.00 0.96 1.02 0.90 0.98 0.96 "orf, hypothetical protein" b1980 b1980 0.99 0.68 1.10 0.96 0.81 0.96 0.92 0.91 "orf, hypothetical protein" b1981 shiA 0.78 0.75 0.16 0.67 0.74 0.66 0.56 0.69 "putative transport protein, shikimate" b1982 amn 0.92 1.01 0.51 1.05 1.31 1.07 0.81 1.14 AMP nucleosidase b1983 b1983 0.88 0.53 0.88 0.64 0.78 0.81 0.76 0.74 "orf, hypothetical protein" b1985 yeeO 1.04 0.73 1.00 0.96 1.07 1.18 0.92 1.07 "orf, hypothetical protein" b1987 cbl 1.75 5.86 20.00 2.19 1.93 2.07 9.20 2.06 transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM b1988 nac 28.23 53.02 33.33 22.91 21.42 22.65 38.19 22.33 nitrogen assimilation control protein b1990 erfK 1.01 1.06 1.43 1.36 1.27 1.32 1.17 1.32 "orf, hypothetical protein" b1991 cobT 0.95 0.94 1.16 1.00 1.02 0.99 1.02 1.00 nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase b1992 cobS 0.93 1.07 0.89 0.98 0.98 1.10 0.96 1.02 cobalamin 5'-phosphate synthase b1993 cobU 0.93 1.18 0.98 0.96 0.93 0.96 1.03 0.95 cobinamide kinase/cobinamide phosphate guanylyltransferase b1994 trs5_6 0.67 0.69 0.75 1.15 0.88 1.29 0.70 1.11 IS5 transposase b1995 b1995 1.08 1.01 1.15 1.18 0.81 1.02 1.08 1.00 "orf, hypothetical protein" b1996 yi22_3 1.03 0.93 0.95 1.22 0.98 1.13 0.97 1.11 IS2 hypothetical protein b1997 yi21_3 0.89 1.11 0.85 1.05 0.93 1.05 0.95 1.01 IS2 hypothetical protein b1998 b1998 1.26 1.52 1.10 0.94 1.07 1.39 1.04 "orf, hypothetical protein" b1999 yeeP 0.97 1.04 1.05 0.93 0.94 0.99 1.02 0.95 putative histone b2000 flu 1.05 0.87 0.36 0.94 0.87 0.99 0.76 0.93 "outer membrane fluffing protein, similar to adhesin" b2001 b2001 1.16 1.31 0.95 1.35 0.77 1.34 1.14 1.15 "orf, hypothetical protein" b2002 yeeS 1.11 1.48 0.89 0.92 1.06 0.97 1.16 0.98 "putative DNA repair protein, RADC family" b2003 yeeT 1.04 1.07 0.96 0.93 1.04 0.99 "orf, hypothetical protein" b2004 yeeU 0.97 1.07 1.03 1.17 1.00 0.97 1.02 1.05 putative structural protein b2005 yeeV 1.02 1.04 1.02 0.89 0.99 1.03 0.97 "orf, hypothetical protein" b2006 yeeW 1.08 1.36 1.20 1.10 0.89 1.04 1.21 1.01 "orf, hypothetical protein" b2007 yeeX 1.27 0.99 1.28 0.73 1.11 0.96 1.18 0.93 putative alpha helix protein b2008 yeeA 1.09 1.12 1.32 1.12 1.09 1.09 1.18 1.10 "orf, hypothetical protein" b2009 sbmC 1.48 1.50 2.04 1.06 1.07 1.16 1.67 1.10 SbmC protein b2010 dacD 1.14 1.28 1.28 1.00 1.04 1.03 1.23 1.02 penicillin binding protein 6b b2011 sbcB 0.92 0.97 0.97 0.93 0.98 0.91 0.95 0.94 "exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase" b2012 yeeD 1.14 1.16 1.56 1.02 0.91 1.01 1.29 0.98 "orf, hypothetical protein" b2013 yeeE 0.97 1.19 2.56 1.16 1.09 1.05 1.57 1.10 putative transport system permease protein b2014 yeeF 1.19 0.71 1.39 0.57 0.82 0.67 1.10 0.69 putative amino acid/amine transport protein b2015 yeeY 1.10 1.38 1.16 1.18 0.98 1.02 1.21 1.06 putative transcriptional regulator LYSR-type b2016 b2016 1.06 1.10 0.93 1.26 1.39 1.15 1.03 1.27 putative enzyme of sugar metabolism b2017 yefM 1.09 1.06 0.95 0.95 0.99 0.94 1.03 0.96 "orf, hypothetical protein" b2018 hisL 1.23 0.86 0.97 1.51 1.55 1.05 1.34 his operon leader peptide b2019 hisG 0.66 0.67 0.36 1.02 0.82 0.72 0.56 0.85 ATP phosphoribosyltransferase b2020 hisD 0.80 0.69 0.25 1.04 0.84 0.84 0.58 0.91 L-histidinal:NAD+ oxidoreductase; L-histidinol:NAD+ oxidoreductase b2021 hisC 0.65 0.84 0.36 0.98 0.97 0.81 0.62 0.92 histidinol-phosphate aminotransferase b2022 hisB 0.69 0.89 0.43 1.04 1.01 0.83 0.67 0.96 imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase b2023 hisH 0.67 0.71 0.53 1.01 0.82 0.86 0.64 0.90 glutamine amidotransferase subunit of heterodimer with HisF = imidazole glycerol phosphate synthase holoenzyme b2024 hisA 0.86 0.87 0.48 0.89 0.78 0.78 0.74 0.82 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase b2025 hisF 0.75 0.90 0.43 0.90 0.91 0.86 0.69 0.89 imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme b2026 hisI 0.87 0.72 0.58 0.89 0.90 0.79 0.72 0.86 phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase b2027 wzzB 0.83 0.79 1.35 0.63 0.98 0.81 0.99 0.81 regulator of length of O-antigen component of lipopolysaccharide chains b2028 ugd 0.87 0.53 0.95 1.69 1.14 1.11 0.78 1.31 UDP-glucose 6-dehydrogenase b2029 gnd 0.52 0.91 0.95 0.82 0.78 0.72 0.85 "gluconate-6-phosphate dehydrogenase, decarboxylating" b2030 trs5_7 0.79 3.77 0.75 1.13 1.07 1.09 1.77 1.10 IS5 transposase b2031 yefJ 0.83 0.58 0.69 1.08 0.98 0.93 0.70 1.00 putative creatinase (EC 3.5.-) b2032 wbbK 0.73 0.57 0.71 0.96 1.02 0.80 0.67 0.93 putative glucose transferase b2033 wbbJ 0.44 0.76 0.91 0.60 0.91 putative O-acetyl transferase b2034 wbbI 0.58 0.48 0.93 1.09 0.99 1.15 0.66 1.08 putative Galf transferase b2035 wbbH 0.58 1.01 1.08 1.01 0.94 0.80 1.01 O-antigen polymerase b2036 glf 0.89 0.90 1.00 0.91 0.92 0.90 0.94 UDP-galactopyranose mutase b2037 rfbX 0.72 0.54 1.32 1.07 0.97 1.02 0.86 1.02 putative O-antigen transporter b2038 rfbC 0.76 0.67 0.99 1.01 0.85 0.91 0.81 0.92 "dTDP-6-deoxy-D-glucose-3,5 epimerase" b2039 rfbA 0.66 0.71 1.03 1.03 0.98 0.90 0.80 0.97 glucose-1-phosphate thymidylyltransferase b2040 rfbD 0.56 0.71 1.00 1.00 0.99 0.64 1.00 dTDP-6-deoxy-L-mannose-dehydrogenase b2041 rfbB 0.61 0.50 0.98 1.15 1.21 0.97 0.70 1.11 "dTDP-glucose 4,6 dehydratase" b2042 galF 0.63 0.83 1.04 0.90 0.97 0.73 0.97 "homolog of Salmonella UTP--glucose-1-P uridyltransferase, probably a UDP-gal transferase" b2043 wcaM 0.98 0.85 1.18 0.94 1.07 1.06 1.00 1.02 "orf, hypothetical protein" b2044 wcaL 1.09 1.31 1.01 1.10 1.04 1.11 1.14 1.08 putative colanic acid biosynthesis glycosyl transferase b2045 wcaK 1.07 1.21 1.12 1.00 1.27 1.00 1.13 1.09 putative galactokinase (EC 2.7.1.6). b2046 wzxC 0.92 1.47 1.16 1.09 0.86 0.99 1.18 0.98 probable export protein b2047 wcaJ 0.98 0.99 0.84 0.82 1.14 0.99 0.93 putative colanic acid biosynthsis UDP-glucose lipid carrier transferase b2048 cpsG 0.97 1.24 1.03 1.08 0.76 1.04 1.08 0.96 phosphomannomutase b2049 cpsB 1.06 0.72 0.94 0.93 0.88 0.89 0.92 mannose-1-phosphate guanyltransferase b2050 wcaI 0.99 1.14 1.08 1.01 0.96 1.02 1.07 1.00 putative colanic biosynthesis glycosyl transferase b2051 wcaH 0.95 1.11 0.75 1.01 0.82 0.98 0.94 0.94 GDP-mannose mannosyl hydrolase b2052 wcaG 1.04 0.85 0.80 0.94 0.97 0.94 0.90 0.95 putative nucleotide di-P-sugar epimerase or dehydratase b2053 gmd 0.88 0.88 GDP-D-mannose dehydratase b2054 wcaF 1.21 1.06 0.58 0.97 1.00 1.03 0.95 1.00 putative transferase b2055 wcaE 0.93 1.21 1.30 0.98 0.91 0.92 1.15 0.94 putative colanic acid biosynthesis glycosyl transferase b2056 wcaD 0.93 1.14 1.67 1.01 0.91 1.07 1.25 1.00 putative colanic acid polymerase b2057 wcaC 0.94 1.37 0.97 0.98 0.89 0.87 1.09 0.91 putative glycosyl transferase b2058 wcaB 0.99 0.78 0.86 0.94 1.13 1.02 0.88 1.03 putative transferase b2059 wcaA 0.96 1.30 1.32 1.09 1.01 1.15 1.19 1.08 putative regulator b2060 b2060 1.19 1.28 1.01 0.91 1.35 1.24 1.09 "orf, hypothetical protein" b2061 wzb 0.95 1.33 0.83 1.22 0.79 1.20 1.04 1.07 probable protein-tyrosine-phosphatase b2062 wza 1.05 1.11 0.78 1.10 0.94 1.18 0.98 1.07 putative polysaccharide export protein b2063 yegH 0.92 1.06 1.22 1.04 1.04 0.96 1.07 1.01 putative transport protein b2064 asmA 1.10 0.87 1.16 0.91 1.02 1.05 1.04 0.99 suppressor of ompF assembly mutants b2065 dcd 1.00 0.91 0.93 1.00 0.84 0.90 0.95 0.91 2'-deoxycytidine 5'-triphosphate deaminase b2066 udk 0.89 0.82 1.06 1.01 1.04 0.87 0.92 0.97 uridine/cytidine kinase b2067 yegE 0.98 0.76 1.08 0.87 0.90 0.87 0.95 putative sensor-type protein b2068 alkA 1.12 1.33 1.25 0.97 0.97 1.13 1.23 1.02 "3-methyl-adenine DNA glycosylase II, inducible" b2069 yegD 0.84 0.93 0.83 0.90 1.09 0.89 0.94 putative heat shock protein b2070 b2070 1.41 1.23 0.99 0.88 0.85 1.32 0.91 putative chaperonin b2071 b2071 0.99 0.77 0.97 0.92 0.89 0.98 0.91 0.93 "orf, hypothetical protein" b2072 b2072 1.16 1.51 1.45 1.08 1.09 1.21 1.37 1.13 "orf, hypothetical protein" b2073 b2073 1.15 1.17 1.18 0.91 0.92 0.96 1.17 0.93 "orf, hypothetical protein" b2074 b2074 1.21 1.37 1.06 1.03 1.09 1.29 1.06 putative membrane protein b2075 yegN 0.90 1.27 1.32 0.90 0.99 0.91 1.16 0.93 "orf, hypothetical protein" b2076 yegO 0.98 0.97 1.08 1.03 1.02 1.05 1.01 1.03 "orf, hypothetical protein" b2077 yegB 1.05 1.13 1.06 1.04 1.00 1.14 1.08 1.06 putative transport protein b2078 baeS 1.04 1.22 1.01 0.97 1.12 1.15 1.09 1.08 sensor protein (for BaeR) b2079 baeR 0.92 1.16 1.15 1.29 0.96 1.04 1.13 transcriptional response regulatory protein (sensor BaeS) b2080 b2080 1.43 3.57 2.63 1.98 1.61 2.31 2.54 1.97 "orf, hypothetical protein" b2081 yegQ 0.80 0.71 0.82 0.77 0.85 0.92 0.78 0.85 "orf, hypothetical protein" b2082 ogrK 0.92 1.25 0.92 1.13 0.86 1.03 1.03 1.01 prophage P2 ogr protein b2083 b2083 0.94 0.81 1.09 0.98 0.85 0.92 0.95 0.92 "orf, hypothetical protein" b2084 b2084 0.97 1.22 1.22 0.98 0.97 0.92 1.14 0.96 "orf, hypothetical protein" b2085 b2085 0.90 1.48 1.09 0.86 0.93 1.19 0.96 "orf, hypothetical protein" b2086 b2086 1.28 1.21 1.25 1.06 1.28 1.17 "orf, hypothetical protein" b2087 gatR_1 0.95 1.21 0.88 1.01 0.97 0.91 1.01 0.96 "split galactitol utilization operon repressor, interrupted" b2088 b2088 1.12 1.07 0.92 1.00 1.12 1.00 "orf, hypothetical protein" b2089 tra5_4 0.95 0.79 1.72 1.22 1.02 1.11 1.15 1.12 IS3 putative transposase b2090 gatR_2 0.94 0.86 1.11 1.00 1.00 1.18 0.97 1.06 "split galactitol utilization operon repressor, fragment 2" b2091 gatD 0.27 0.24 0.21 1.03 0.99 0.97 0.24 1.00 galactitol-1-phosphate dehydrogenase b2092 gatC 0.24 0.13 0.14 1.06 0.94 1.03 0.17 1.01 PTS system galactitol-specific enzyme IIC b2093 gatB 0.22 0.23 0.14 1.25 0.96 1.26 0.20 1.16 galactitol-specific enzyme IIB of phosphotransferase system b2094 gatA 0.24 0.12 0.15 0.93 0.84 1.03 0.17 0.93 galactitol-specific enzyme IIA of phosphotransferase system b2095 gatZ 0.16 0.18 0.23 1.08 1.02 1.09 0.19 1.06 putative tagatose 6-phosphate kinase 1 b2096 gatY 0.27 0.19 0.22 1.09 1.03 1.11 0.23 1.08 tagatose-bisphosphate aldolase 1 b2097 b2097 1.95 3.86 4.53 2.86 1.95 3.75 "orf, hypothetical protein" b2098 yegT 0.94 0.70 1.09 0.80 1.04 0.82 0.98 putative nucleoside permease protein b2099 b2099 1.32 1.30 0.85 0.99 1.04 1.14 1.16 1.06 "orf, hypothetical protein" b2100 b2100 1.14 1.00 0.95 0.97 0.92 1.08 1.03 0.99 putative kinase b2101 yegW 0.97 0.94 1.10 1.09 0.96 0.94 1.00 1.00 putative transcriptional regulator b2102 yegX 1.00 1.11 0.94 0.98 0.87 1.00 1.02 0.95 "orf, hypothetical protein" b2103 thiD 0.86 0.95 0.66 1.00 0.81 1.05 0.82 0.95 phosphomethylpyrimidine kinase b2104 thiM 1.13 0.71 1.01 0.90 0.93 0.92 0.95 hydoxyethylthiazole kinase b2105 yohL 1.03 0.76 1.25 0.87 0.96 0.94 1.01 0.92 "orf, hypothetical protein" b2106 yohM 0.97 1.56 0.93 0.96 0.87 0.92 1.15 0.92 "orf, hypothetical protein" b2107 b2107 1.34 1.57 1.45 0.84 0.97 1.16 1.45 0.99 "orf, hypothetical protein" b2108 yehA 0.93 1.80 1.04 0.88 1.05 1.37 0.99 putative type-1 fimbrial protein b2109 yehB 0.97 0.60 1.43 0.98 0.92 0.95 1.00 0.95 putative outer membrane protein b2110 yehC 0.96 1.11 0.92 0.96 0.90 0.95 1.00 0.94 putative chaperone b2111 yehD 1.12 1.30 0.88 0.82 1.06 0.84 1.10 0.91 putative fimbrial-like protein b2112 yehE 1.24 3.78 1.39 0.99 1.07 0.93 2.14 1.00 "orf, hypothetical protein" b2113 mrp 0.80 0.89 1.61 0.98 1.05 0.95 1.10 0.99 putative ATPase b2114 metG 0.80 0.56 0.99 0.88 0.71 0.68 0.86 methionine tRNA synthetase b2115 molR_1 1.11 0.99 1.06 1.10 0.91 0.98 1.05 1.00 "molybdate metabolism regulator, first fragment" b2116 molR_2 1.35 1.09 0.90 0.89 1.04 1.22 0.94 "molybdate metabolism regulator, second fragment 2" b2117 molR_3 1.37 0.87 0.99 0.83 1.04 1.12 0.95 "molybdate metabolism regulator, third fragment" b2118 yehI 0.98 1.17 1.15 1.00 1.02 1.03 1.10 1.02 putative regulator b2119 yehL 1.08 0.97 1.00 0.93 0.88 1.03 1.02 0.95 "orf, hypothetical protein" b2120 yehM 1.01 1.14 1.25 0.96 1.00 1.05 1.13 1.00 "orf, hypothetical protein" b2121 yehP 0.99 1.16 0.98 0.96 1.03 1.03 1.04 1.01 "orf, hypothetical protein" b2122 yehQ 0.98 1.06 0.91 1.10 0.98 1.02 "orf, hypothetical protein" b2123 yehR 0.96 1.80 1.05 0.94 0.96 0.94 1.27 0.95 "orf, hypothetical protein" b2124 yehS 0.93 1.45 1.20 1.00 0.87 1.01 1.19 0.96 "orf, hypothetical protein" b2125 yehT 1.11 1.15 1.28 0.92 1.00 1.05 1.18 0.99 "orf, hypothetical protein" b2126 yehU 0.98 1.07 1.10 1.08 0.92 1.26 1.05 1.09 putative 2-component sensor protein b2127 yehV 1.44 1.57 2.04 1.35 1.21 1.43 1.68 1.33 putative transcriptional regulator b2128 yehW 1.17 0.86 1.11 1.01 1.20 1.02 1.11 putative transport system permease protein b2129 yehX 1.12 1.36 1.32 1.12 0.90 1.06 1.27 1.03 putative ATP-binding component of a transport system b2130 yehY 0.96 0.93 1.10 0.91 0.89 0.95 0.97 putative transport system permease protein b2131 yehZ 1.21 1.22 1.21 1.15 1.21 1.19 putative transport system permease protein b2132 bglX 0.97 1.03 0.76 0.89 0.97 0.98 0.92 0.95 "beta-D-glucoside glucohydrolase, periplasmic" b2133 dld 1.12 0.65 1.29 1.20 1.25 0.88 1.25 "D-lactate dehydrogenase, FAD protein, NADH independent" b2134 pbpG 0.89 1.08 0.98 1.34 1.12 1.25 0.98 1.24 penicillin-binding protein 7 b2135 yohC 1.20 1.51 1.54 0.92 1.12 1.05 1.42 1.03 "orf, hypothetical protein" b2136 yohD 1.11 1.03 1.19 1.05 0.90 1.03 1.11 0.99 "orf, hypothetical protein" b2137 yohF 1.07 1.62 1.54 1.26 1.11 1.29 1.41 1.22 putative oxidoreductase b2138 yohG 1.10 1.18 1.16 1.01 0.82 1.03 1.15 0.95 putative channel/filament proteins b2139 yohH 1.06 1.14 0.80 0.94 1.01 0.94 1.00 0.96 "orf, hypothetical protein" b2140 yohI 0.96 1.05 1.06 1.01 0.99 1.02 1.02 1.01 putative regulator protein b2141 yohJ 0.96 1.45 1.43 0.99 0.93 0.91 1.28 0.94 "orf, hypothetical protein" b2142 yohK 1.94 1.05 0.93 1.08 1.94 1.02 putative seritonin transporter b2143 cdd 1.17 1.18 2.44 1.08 0.99 1.21 1.60 1.09 cytidine/deoxycytidine deaminase b2144 sanA 0.94 1.33 0.90 0.83 0.96 1.14 0.90 vancomycin sensitivity b2145 b2145 1.02 1.23 1.20 0.97 0.94 0.91 1.15 0.94 "orf, hypothetical protein" b2146 b2146 0.97 1.30 1.05 1.16 1.06 1.14 1.11 1.12 putative oxidoreductase b2147 yeiA 1.00 0.89 1.16 1.16 1.10 1.05 1.02 1.10 putative oxidoreductase b2148 mglC 1.00 1.08 1.18 0.89 0.85 1.08 1.09 0.94 methyl-galactoside transport and galactose taxis b2149 mglA 0.79 0.89 0.66 0.71 0.70 0.79 0.78 0.73 ATP-binding component of methyl-galactoside transport and galactose taxis b2150 mglB 0.82 0.78 0.68 0.66 0.79 0.74 0.76 0.73 galactose-binding transport protein; receptor for galactose taxis b2151 galS 1.11 1.24 0.98 0.99 0.85 1.07 1.11 0.97 "mgl repressor, galactose operon inducer" b2152 yeiB 0.94 0.96 0.86 0.96 0.85 0.93 0.92 0.91 "orf, hypothetical protein" b2153 folE 0.70 0.68 0.52 0.87 1.17 0.84 0.63 0.96 GTP cyclohydrolase I b2154 yeiG 0.75 0.63 0.49 1.07 1.02 0.98 0.62 1.02 putative esterase (EC 3.1.1.-). b2155 cirA 0.56 0.45 0.03 0.32 0.42 0.36 0.35 0.37 outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product b2156 lysP 0.56 0.43 0.85 0.47 0.81 0.62 0.61 0.63 lysine-specific permease b2157 yeiE 0.92 1.05 0.88 0.93 1.05 1.14 0.95 1.04 putative transcriptional regulator LYSR-type b2158 yeiH 1.07 0.91 0.97 0.99 0.91 1.02 0.98 0.97 "orf, hypothetical protein" b2159 nfo 1.15 0.83 1.17 1.34 1.11 0.99 1.21 endonuclease IV b2160 yeiI 1.07 1.05 1.00 0.99 1.02 1.06 1.04 1.02 putative kinase b2161 yeiJ 1.05 1.30 1.18 1.13 0.78 0.89 1.18 0.93 putative transport system permease protein b2162 yeiK 0.92 1.28 1.02 0.91 0.98 1.10 0.97 "orf, hypothetical protein" b2163 yeiL 0.96 1.20 1.28 1.09 0.90 1.03 1.15 1.01 putative transcriptional regulator b2164 yeiM 1.04 1.22 1.12 1.07 0.94 1.07 1.13 1.03 putative transport system permease protein b2165 yeiN 1.03 1.33 1.02 1.02 1.07 0.98 1.13 1.02 "orf, hypothetical protein" b2166 yeiC 0.98 1.26 1.19 1.09 1.05 1.13 1.14 1.09 putative kinase b2167 fruA 1.21 1.05 1.16 0.99 1.05 1.05 1.14 1.03 "PTS system, fructose-specific transport protein" b2168 fruK 1.07 1.34 0.97 0.98 0.93 1.01 1.13 0.97 fructose-1-phosphate kinase b2169 fruB 1.09 1.06 0.67 0.96 1.01 1.20 0.94 1.06 "PTS system, fructose-specific IIA/fpr component" b2170 yeiO 1.04 1.26 0.99 1.06 0.88 1.08 1.10 1.01 putative transport b2171 yeiP 0.88 0.84 1.19 0.87 0.94 1.01 0.97 0.94 putative elongation factor b2172 yeiQ 1.04 0.95 0.78 0.95 0.98 1.00 0.92 0.98 putative oxidoreductase b2173 yeiR 0.93 2.07 1.01 0.88 1.08 1.50 0.99 "orf, hypothetical protein" b2174 b2174 0.88 0.91 1.08 0.88 0.88 0.80 0.96 0.85 "orf, hypothetical protein" b2175 spr 0.63 1.16 0.62 1.05 1.21 0.90 0.96 putative lipoprotein b2176 rtn 1.05 1.24 1.16 0.88 0.99 1.06 1.15 0.98 "orf, hypothetical protein" b2177 yejA 1.01 1.21 1.39 1.07 0.88 1.03 1.20 0.99 "orf, hypothetical protein" b2178 yejB 1.11 1.08 0.78 0.91 1.06 1.07 0.99 1.01 putative transport system permease protein b2179 yejE 1.06 1.32 1.19 1.07 1.16 1.20 1.19 1.14 putative transport system permease protein b2180 yejF 0.93 1.12 1.03 0.99 1.04 1.09 1.03 1.04 putative ATP-binding component of a transport system b2181 yejG 0.91 0.93 1.41 0.99 0.89 0.97 1.08 0.95 "orf, hypothetical protein" b2182 bcr 0.86 1.21 1.03 0.94 0.99 0.89 1.03 0.94 bicyclomycin resistance protein; transmembrane protein b2183 rsuA 0.98 0.80 1.22 0.86 0.98 0.94 1.00 0.93 16S pseudouridylate 516 synthase b2184 yejH 1.03 1.08 0.98 0.84 1.07 1.06 0.96 putative ATP-dependent helicase b2185 rplY 0.66 0.50 0.90 0.52 0.63 0.73 0.69 0.63 50S ribosomal subunit protein L25 b2186 yejK 0.77 0.87 0.75 0.90 0.80 0.82 0.82 "orf, hypothetical protein" b2187 yejL 1.06 0.76 1.22 0.91 0.89 0.94 1.01 0.91 "orf, hypothetical protein" b2188 yejM 0.99 0.72 1.28 0.82 1.00 0.97 1.00 0.93 putative sulfatase b2190 yejO 1.38 1.15 0.99 0.81 1.13 1.26 0.98 putative ATP-binding component of a transport system b2191 b2191 0.99 1.55 0.93 1.01 1.45 1.08 1.16 1.18 "orf, hypothetical protein" b2192 trs5_8 0.78 0.60 0.80 1.25 0.88 1.14 0.73 1.09 IS5 transposase b2193 narP 1.02 1.19 0.91 0.85 1.03 1.11 0.93 nitrate/nitrite response regulator (sensor NarQ) b2194 ccmH 1.11 1.85 1.06 0.93 1.06 1.48 1.02 possible subunit of heme lyase b2195 dsbE 0.95 1.00 1.14 1.02 1.03 1.03 1.03 1.03 disulfide oxidoreductase (in biogenesis of cytochrome c? b2196 ccmF 0.96 1.08 1.35 1.03 0.94 0.98 1.13 0.98 cytochrome c-type biogenesis protein b2197 ccmE 0.88 1.05 1.02 0.94 0.85 0.96 0.98 0.92 "cytochrome c biogenesis, possible subunit of a heme lyase" b2198 ccmD 1.03 1.94 0.98 1.04 0.77 0.98 1.32 0.93 heme exporter protein C b2199 ccmC 1.38 0.85 0.91 0.96 0.93 1.12 0.93 heme exporter protein C b2200 ccmB 0.99 1.05 0.87 0.96 0.97 1.04 0.97 0.99 "heme exporter protein B, cytochrome c-type biogenesis protein" b2201 ccmA 0.90 0.91 1.03 0.90 0.96 0.90 0.96 ATP binding protein of heme exporter A b2202 napC 1.07 1.04 1.28 1.12 0.76 1.01 1.13 0.96 cytochrome c-type protein b2203 napB 0.95 1.09 1.23 0.96 0.88 0.94 1.09 0.93 cytochrome c-type protein b2204 napH 1.00 1.21 0.96 1.09 0.88 1.09 1.06 1.02 ferredoxin-type protein: electron transfer b2205 napG 0.91 1.14 1.12 0.98 0.80 0.98 1.06 0.92 ferredoxin-type protein: electron transfer b2206 napA 1.02 1.07 1.03 1.04 0.85 0.99 1.04 0.96 probable nitrate reductase 3 b2207 napD 1.01 1.11 0.83 0.92 0.92 0.95 0.98 0.93 "orf, hypothetical protein" b2208 napF 1.03 1.18 1.02 0.92 1.01 0.95 1.08 0.96 ferredoxin-type protein: electron transfer b2209 eco 0.93 1.05 0.95 0.97 1.00 0.94 0.98 0.97 "ecotin, a serine protease inhibitor" b2210 yojH 1.01 1.14 0.99 1.03 1.01 0.93 1.05 0.99 "orf, hypothetical protein" b2211 yojI 1.04 1.06 1.32 0.91 0.98 0.97 1.14 0.95 putative ATP-binding component of a transport system b2212 alkB 1.63 0.79 0.95 1.02 1.05 1.21 1.01 DNA repair system specific for alkylated DNA b2213 ada 1.02 0.94 1.45 1.10 0.94 1.03 1.14 1.02 O6-methylguanine-DNA methyltransferase; transcription activator/repressor b2214 yojL 1.00 1.06 1.02 0.94 1.05 1.03 1.00 "orf, hypothetical protein" b2215 ompC 0.96 0.87 2.33 1.97 2.37 1.72 1.39 2.02 outer membrane protein 1b (Ib;c) b2216 yojN 1.06 1.08 1.27 0.85 1.20 1.07 1.14 1.04 putative 2-component sensor protein b2217 rcsB 0.87 0.76 1.45 1.04 1.11 1.00 1.03 1.05 "positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)" b2218 rcsC 1.08 1.00 1.28 0.82 1.04 1.11 1.12 0.99 "sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB" b2219 atoS 1.09 1.31 1.11 1.06 1.14 1.11 1.17 1.10 sensor protein AtoS for response regulator AtoC b2220 atoC 0.95 1.19 0.86 1.11 0.97 1.12 1.00 1.07 "response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS)" b2221 atoD 0.99 0.93 1.11 1.06 1.04 1.08 1.01 1.06 acetyl-CoA:acetoacetyl-CoA transferase alpha subunit b2222 atoA 1.04 1.23 1.20 1.16 0.89 1.13 1.16 1.06 acetyl-CoA:acetoacetyl-CoA transferase beta subunit b2223 atoE 1.03 1.47 1.15 0.97 0.84 1.07 1.22 0.96 short chain fatty acid transporter b2224 atoB 1.00 1.12 1.08 1.10 0.93 1.21 1.07 1.08 acetyl-CoA acetyltransferase b2225 b2225 1.01 1.31 0.88 1.00 1.09 1.03 1.07 1.04 "orf, hypothetical protein" b2226 b2226 1.02 1.08 1.05 0.99 1.05 1.07 1.05 1.04 "orf, hypothetical protein" b2227 b2227 0.97 1.35 1.03 1.00 0.90 0.93 1.12 0.94 "orf, hypothetical protein" b2228 b2228 1.04 1.23 1.25 0.92 0.91 1.09 1.17 0.97 putative membrane protein b2229 b2229 1.08 1.24 0.94 0.93 1.00 1.02 1.09 0.98 "orf, hypothetical protein" b2230 yfaA 0.99 1.25 1.09 0.97 0.90 1.03 1.11 0.97 "orf, hypothetical protein" b2231 gyrA 0.76 0.74 0.69 0.66 1.02 0.80 0.73 0.83 "DNA gyrase, subunit A, type II topoisomerase" b2232 ubiG 0.88 0.83 0.78 0.95 0.94 1.02 0.83 0.97 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase b2233 yfaL 0.86 1.21 1.12 0.94 0.90 0.86 1.06 0.90 putative ATP-binding component of a transport system b2234 nrdA 0.86 0.87 0.81 0.98 1.15 0.70 0.85 0.94 "ribonucleoside diphosphate reductase 1, alpha subunit, B1" b2235 nrdB 0.95 0.72 1.05 1.05 1.00 0.94 0.91 1.00 "ribonucleoside-diphosphate reductase 1, beta subunit, B2" b2236 yfaE 0.85 1.08 1.05 0.98 0.87 0.89 0.99 0.91 "orf, hypothetical protein" b2237 inaA 1.52 1.39 1.08 1.08 1.38 1.45 1.18 pH-inducible protein involved in stress response b2238 yfaH 0.96 1.10 0.88 0.91 0.91 1.03 0.90 "orf, hypothetical protein" b2239 glpQ 1.26 1.54 1.89 1.08 1.21 1.15 1.56 1.15 "glycerophosphodiester phosphodiesterase, periplasmic" b2240 glpT 1.17 1.23 0.86 1.08 0.99 1.12 1.09 1.06 sn-glycerol-3-phosphate permease b2241 glpA 0.94 1.24 0.88 1.05 0.90 1.12 1.02 1.02 "sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit" b2242 glpB 1.01 1.04 0.89 1.06 0.96 1.03 0.98 1.02 "sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit" b2243 glpC 1.23 0.93 1.08 1.08 1.09 1.08 1.08 "sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit" b2244 yfaD 0.98 1.40 1.18 1.01 0.82 1.02 1.19 0.95 "orf, hypothetical protein" b2245 b2245 1.06 1.36 1.14 0.84 1.19 1.00 1.19 1.01 "orf, hypothetical protein" b2246 b2246 0.84 1.18 0.85 1.02 0.85 1.13 0.96 1.00 putative transport protein b2247 b2247 1.09 1.20 0.86 1.08 0.94 1.10 1.05 1.04 putative racemase b2248 b2248 1.17 1.04 0.95 1.10 0.96 0.99 1.05 1.02 putative regulator b2249 b2249 0.92 1.01 0.96 1.08 1.02 0.90 0.96 1.00 "orf, hypothetical protein" b2250 b2250 1.06 1.14 0.81 0.91 0.92 1.06 1.00 0.96 "orf, hypothetical protein" b2251 yfaO 0.92 1.14 0.81 0.91 0.91 0.97 0.96 0.93 "orf, hypothetical protein" b2252 ais 0.92 0.75 0.88 0.77 0.92 0.84 0.86 protein induced by aluminum b2253 b2253 1.22 1.40 1.27 1.81 1.42 0.99 1.30 1.41 putative enzyme b2254 b2254 1.07 1.55 0.91 1.51 1.10 1.10 1.18 1.24 putative sugar transferase b2255 b2255 1.09 1.35 1.06 1.75 0.96 1.05 1.17 1.25 putative transformylase b2256 b2256 1.04 1.39 1.04 1.31 1.04 1.11 1.16 1.15 "orf, hypothetical protein" b2257 b2257 1.07 1.12 1.22 1.22 0.89 1.03 1.14 1.05 "orf, hypothetical protein" b2258 b2258 0.99 1.21 1.16 1.08 0.89 0.88 1.12 0.95 putative transport/receptor protein b2259 pmrD 0.99 1.00 1.35 0.91 0.96 0.88 1.11 0.92 polymyxin resistance protein B b2260 menE 0.92 1.14 1.18 0.92 0.86 0.99 1.08 0.92 o-succinylbenzoate-CoA ligase b2261 menC 1.02 1.02 1.03 1.06 1.03 1.07 1.02 1.05 o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA b2262 menB 1.07 1.24 1.12 1.13 1.04 1.10 1.14 1.09 dihydroxynaphtoic acid synthetase b2263 yfbB 1.08 1.16 1.04 1.11 1.10 1.12 1.08 putative enzyme b2264 menD 1.17 1.16 0.90 1.09 0.97 1.13 1.08 1.06 2-oxoglutarate decarboxylase; SHCHC synthase b2265 menF 0.87 0.69 0.88 1.07 1.00 1.07 0.81 1.05 "isochorismate hydroxymutase 2, menaquinone biosynthesis" b2266 elaB 2.00 3.73 2.00 1.80 1.70 1.79 2.58 1.76 "orf, hypothetical protein" b2267 elaA 0.94 1.32 1.23 0.99 1.03 0.96 1.16 0.99 "orf, hypothetical protein" b2268 elaC 0.93 1.47 1.01 0.96 0.94 1.20 0.97 "orf, hypothetical protein" b2269 elaD 0.97 0.99 0.89 0.87 0.92 0.98 0.89 putative sulfatase / phosphatase b2270 yfbK 0.98 0.94 1.05 1.09 0.98 1.03 "orf, hypothetical protein" b2271 yfbL 1.05 1.38 1.11 1.15 0.88 0.86 1.18 0.96 putative aminopeptidase b2272 yfbM 0.95 1.55 1.20 0.96 0.87 0.98 1.23 0.94 "orf, hypothetical protein" b2273 yfbN 1.50 0.93 0.99 1.06 0.85 1.22 0.97 "orf, hypothetical protein" b2274 b2274 0.99 1.33 1.03 0.84 0.96 0.93 1.12 0.91 "orf, hypothetical protein" b2275 b2275 0.89 1.44 0.99 1.01 0.84 0.90 1.11 0.92 "orf, hypothetical protein" b2276 nuoN 0.64 1.04 0.84 0.87 0.89 0.84 0.87 NADH dehydrogenase I chain N b2277 nuoM 0.63 0.74 1.12 0.89 0.99 0.89 0.83 0.92 NADH dehydrogenase I chain M b2278 nuoL 0.74 1.22 0.75 0.76 0.77 0.98 0.76 NADH dehydrogenase I chain L b2279 nuoK 0.81 0.63 0.96 0.94 0.88 0.79 0.80 0.87 NADH dehydrogenase I chain K b2280 nuoJ 0.78 1.28 0.87 0.91 0.93 1.03 0.90 NADH dehydrogenase I chain J b2281 nuoI 0.79 0.67 1.05 1.00 0.73 0.89 0.84 0.87 NADH dehydrogenase I chain I b2282 nuoH 0.89 1.11 0.83 0.86 0.91 1.00 0.87 NADH dehydrogenase I chain H b2283 nuoG 0.61 0.57 0.65 0.91 0.69 0.78 0.61 0.79 NADH dehydrogenase I chain G b2284 nuoF 0.94 0.88 1.14 0.77 0.85 0.73 0.99 0.78 NADH dehydrogenase I chain F b2285 nuoE 0.50 1.01 0.84 0.93 0.78 0.76 0.85 NADH dehydrogenase I chain E b2286 nuoC 0.58 0.60 1.05 0.67 0.88 0.56 0.74 0.70 "NADH dehydrogenase I chain C, D" b2287 nuoB 0.76 0.57 1.10 0.74 0.99 0.73 0.81 0.82 NADH dehydrogenase I chain B b2288 nuoA 0.58 0.60 0.86 0.93 0.81 0.80 0.68 0.85 NADH dehydrogenase I chain A b2289 lrhA 1.36 0.69 0.91 0.82 0.96 1.02 0.90 "NADH dehydrogenase transcriptional regulator, LysR family" b2290 b2290 0.99 1.22 1.20 1.27 1.13 1.10 1.20 putative aminotransferase b2291 b2291 1.05 1.51 1.18 1.03 0.99 1.02 1.25 1.01 putative alpha helix protein b2292 yfbS 1.06 1.19 0.97 1.20 1.06 1.12 putative transport protein b2293 yfbT 1.00 0.93 0.74 1.06 0.85 1.21 0.89 1.04 putative phosphatase b2294 b2294 1.01 0.98 0.93 0.90 0.86 1.00 0.90 "orf, hypothetical protein" b2295 b2295 1.10 1.21 1.22 0.98 1.04 1.05 1.18 1.02 "orf, hypothetical protein" b2296 ackA 0.97 1.09 0.67 0.97 0.82 0.84 0.91 0.88 acetate kinase b2297 pta 0.80 1.06 0.47 1.04 1.17 0.84 0.78 1.02 phosphotransacetylase b2298 yfcC 1.35 1.04 0.92 0.77 0.98 1.20 0.89 putative S-transferase b2299 b2299 0.87 0.91 1.39 1.00 0.94 1.07 1.06 1.00 putative regulator b2300 yfcE 0.99 0.94 1.10 1.06 1.00 0.99 1.01 1.02 "orf, hypothetical protein" b2301 yfcF 0.99 0.91 1.39 1.14 1.00 1.11 1.10 1.08 "orf, hypothetical protein" b2302 yfcG 1.16 1.50 1.32 1.15 1.18 1.00 1.33 1.11 putative S-transferase b2303 folX 0.81 0.78 1.16 0.94 1.11 0.90 0.92 0.98 "D-erythro-7,8-dihydroneopterin tri P epimerase" b2304 b2304 0.86 0.91 0.87 0.95 0.92 0.95 0.88 0.94 putative sugar nucleotide epimerase b2305 yfcI 1.10 1.58 1.39 1.09 1.00 1.04 1.36 1.04 "orf, hypothetical protein" b2306 hisP 1.37 1.37 1.54 1.30 1.00 1.20 1.43 1.17 ATP-binding component of histidine transport b2307 hisM 1.09 1.11 2.17 1.10 1.43 1.06 1.46 1.20 "histidine transport, membrane protein M" b2308 hisQ 1.18 1.12 1.56 1.06 1.18 0.93 1.29 1.06 histidine transport system permease protein b2309 hisJ 1.21 1.35 2.27 1.10 1.31 1.20 1.61 1.20 histidine-binding periplasmic protein of high-affinity histidine transport system b2310 argT 5.28 4.17 7.37 8.69 7.10 4.72 7.72 "lysine-, arginine-, ornithine-binding periplasmic protein" b2311 ubiX 1.16 1.09 1.27 1.07 0.91 1.17 1.17 1.05 3-octaprenyl-4-hydroxybenzoate carboxy-lyase b2312 purF 0.58 0.69 0.92 0.86 0.81 0.64 0.73 0.77 amidophosphoribosyltransferase = PRPP amidotransferase b2313 cvpA 0.66 0.45 0.83 0.97 0.80 0.84 0.65 0.87 membrane protein required for colicin V production b2314 dedD 0.89 1.08 1.18 1.13 0.90 1.14 1.05 1.06 putative lipoprotein b2315 folC 0.89 0.73 1.00 0.96 0.96 0.92 0.87 0.95 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase b2316 accD 0.76 1.00 0.78 0.90 0.95 0.88 0.88 "acetylCoA carboxylase, carboxytransferase component, beta subunit" b2317 dedA 1.06 1.03 0.96 1.00 1.06 1.00 "orf, hypothetical protein" b2318 truA 0.86 1.06 0.97 0.96 0.86 1.00 pseudouridylate synthase I b2319 usg 0.91 1.06 1.01 0.89 0.60 0.99 0.83 putative PTS system enzyme II A component b2320 pdxB 0.79 0.88 0.65 1.08 0.87 1.09 0.77 1.01 erythronate-4-phosphate dehyrogenase b2321 div 0.99 1.14 0.99 0.98 0.96 0.96 1.04 0.97 cell division protein b2322 b2322 0.95 1.21 1.04 0.96 0.77 0.97 1.07 0.90 putative transport protein b2323 fabB 0.72 0.60 0.65 0.80 1.15 0.80 0.66 0.92 3-oxoacyl-[acyl-carrier-protein] synthase I b2324 b2324 0.92 1.04 1.12 0.93 0.97 1.04 1.03 0.98 putative peptidase b2325 b2325 0.91 0.78 1.01 0.89 0.94 1.01 0.90 0.95 "orf, hypothetical protein" b2326 b2326 0.86 0.69 0.77 0.86 1.12 0.78 0.92 putative transporting ATPase b2327 yfcA 0.88 1.01 1.01 1.03 0.87 0.94 0.97 0.95 putative structural protein b2328 mepA 0.91 0.80 0.92 0.80 0.94 0.96 0.88 0.90 "murein DD-endopeptidase, penicillin-insensitive" b2329 aroC 0.70 0.76 0.71 0.85 0.83 0.75 0.72 0.81 chorismate synthase b2330 yfcB 0.75 1.03 1.12 0.95 0.75 1.03 putative adenine-specific methylase b2331 b2331 0.99 1.09 1.10 1.02 1.09 1.06 1.06 1.06 "orf, hypothetical protein" b2332 b2332 0.92 1.04 1.20 1.05 0.96 1.03 1.05 1.01 "orf, hypothetical protein" b2333 b2333 1.18 1.01 1.11 0.86 0.84 1.10 0.94 putative fimbrial-like protein b2334 b2334 0.98 1.48 1.03 1.14 0.97 0.91 1.16 1.01 "orf, hypothetical protein" b2335 b2335 1.03 1.43 0.92 1.18 1.20 1.21 1.13 1.20 putative fimbrial protein b2336 yfcS 1.28 1.18 1.01 1.05 1.06 1.23 1.04 putative chaperone b2337 b2337 1.12 0.97 1.16 0.98 0.97 1.03 1.08 0.99 putative outer membrane protein b2338 yfcU 1.12 1.11 1.56 1.02 0.99 1.02 1.26 1.01 putative outer membrane protein b2339 b2339 1.10 1.13 0.88 1.10 0.94 0.96 1.04 1.00 putative fimbrial-like protein b2340 b2340 1.04 0.99 2.33 0.74 1.04 1.30 1.45 1.03 "orf, hypothetical protein" b2341 b2341 1.15 1.02 0.84 0.96 1.06 1.15 1.00 1.06 putative enzyme b2342 b2342 0.96 0.97 0.89 1.05 0.85 1.19 0.94 1.03 putative acyltransferase b2343 b2343 1.04 1.09 1.08 0.90 0.98 1.11 1.07 1.00 "orf, hypothetical protein" b2344 fadL 0.78 0.75 0.84 0.69 0.73 0.72 0.79 0.71 transport of long-chain fatty acids; sensitivity to phage T2 b2345 b2345 1.38 1.28 1.14 0.93 0.85 0.76 1.27 0.85 "orf, hypothetical protein" b2346 vacJ 0.91 0.84 1.49 0.96 0.88 1.06 1.08 0.97 lipoprotein precursor b2347 yfdC 1.24 1.75 1.18 1.33 1.27 1.50 1.26 putative transport b2349 intC 0.92 1.02 1.15 0.84 0.88 1.02 1.03 0.91 putative prophage Sf6-like integrase b2350 b2350 1.08 0.74 1.06 0.95 0.88 0.93 0.96 0.92 "orf, hypothetical protein" b2351 b2351 0.91 0.70 1.08 1.06 0.94 1.02 0.90 1.01 putative glycan biosynthesis enzyme b2352 b2352 0.60 0.95 1.36 0.83 0.82 0.78 1.00 putative ligase b2353 b2353 1.01 1.18 1.05 0.88 1.02 0.89 1.08 0.93 "orf, hypothetical protein" b2354 b2354 1.07 0.87 1.04 0.98 0.83 0.81 0.99 0.87 "orf, hypothetical protein" b2355 yfdL 1.06 0.95 0.98 0.77 1.03 1.01 0.93 putative RNA polymerase beta b2356 yfdM 0.87 1.32 0.89 1.08 0.90 0.99 1.03 0.99 "orf, hypothetical protein" b2357 yfdN 1.01 1.13 1.32 1.14 0.93 1.11 1.15 1.06 "orf, hypothetical protein" b2358 yfdO 1.00 0.92 0.96 1.18 0.93 0.97 0.96 1.03 "orf, hypothetical protein" b2359 b2359 1.00 0.88 0.98 1.26 1.18 0.94 1.14 "orf, hypothetical protein" b2360 b2360 1.02 1.15 0.93 0.82 1.45 1.29 1.03 1.19 "orf, hypothetical protein" b2361 b2361 0.91 0.88 1.33 1.04 0.93 1.05 1.04 1.01 "orf, hypothetical protein" b2362 b2362 1.05 1.42 0.77 1.20 1.01 0.88 1.08 1.03 "orf, hypothetical protein" b2363 b2363 0.93 2.26 1.11 1.09 0.91 1.05 1.43 1.02 "orf, hypothetical protein" b2364 dsdC 0.91 1.53 0.96 0.83 0.89 0.96 1.13 0.89 D-serine dehydratase (deaminase) transcriptional activator b2365 dsdX 1.30 1.14 1.00 1.03 0.71 1.22 0.91 transport system permease (serine?) b2366 dsdA 0.99 1.33 0.82 0.99 1.07 1.05 1.05 1.04 D-serine dehydratase (deaminase) b2367 emrY 1.05 0.85 1.22 0.90 0.98 1.04 1.04 0.97 multidrug resistance protein Y b2368 emrK 0.98 0.89 1.25 1.12 0.90 0.95 1.04 0.99 multidrug resistance protein K b2369 evgA 0.97 0.50 0.70 1.01 1.23 0.98 0.72 1.07 putative positive transcription regulator (sensor EvgS) b2370 evgS 0.75 0.96 1.07 0.96 0.75 1.00 putative sensor for regulator EvgA b2371 yfdE 1.12 0.93 1.10 1.02 1.12 1.02 putative enzyme b2372 b2372 1.12 1.33 1.19 1.03 0.80 0.86 1.21 0.90 putative receptor protein b2373 b2373 1.05 1.28 1.05 1.06 0.91 1.03 1.13 1.00 putative enzyme b2374 b2374 1.19 0.92 0.92 0.90 0.95 1.05 0.92 putative enzyme b2375 b2375 1.04 1.05 1.02 0.97 1.12 0.98 1.04 1.02 "orf, hypothetical protein" b2376 b2376 0.85 0.83 0.82 0.83 "orf, hypothetical protein" b2377 b2377 1.16 0.88 0.89 0.97 1.00 1.02 0.95 "orf, hypothetical protein" b2378 ddg 1.24 1.32 0.96 1.07 0.90 1.28 0.98 putative heat shock protein b2379 b2379 1.31 1.32 1.43 1.32 1.31 1.36 putative aminotransferase b2380 b2380 1.01 1.01 1.02 1.09 0.88 1.17 1.01 1.05 putative sensor protein b2381 b2381 1.10 1.38 1.04 1.01 0.88 1.01 1.17 0.97 putative 2-component transcriptional regulator b2382 b2382 1.09 1.30 0.98 0.94 1.13 1.20 1.02 putative ARAC-type regulatory protein b2383 b2383 1.22 0.88 0.93 0.87 0.93 1.05 0.91 "putative PTS system enzyme IIA component, enzyme I" b2384 b2384 1.32 1.28 0.98 0.91 0.93 1.30 0.94 "orf, hypothetical protein" b2385 b2385 1.03 1.24 0.97 1.11 0.77 1.07 1.08 0.98 putative peptidase b2386 b2386 0.90 1.43 1.20 1.01 0.96 1.03 1.18 1.00 putative transport protein b2387 b2387 1.21 0.90 0.97 1.04 0.96 1.06 0.99 putative PTS system enzyme IIB component b2388 glk 0.97 1.01 0.68 0.73 0.90 0.96 0.89 0.86 glucokinase b2389 b2389 1.03 1.22 1.12 1.12 1.06 1.18 1.12 1.12 "orf, hypothetical protein" b2390 b2390 0.97 1.38 0.85 1.05 0.94 1.05 1.07 1.01 "orf, hypothetical protein" b2391 b2391 0.95 1.52 0.83 1.12 0.98 1.05 1.10 1.05 "orf, hypothetical protein" b2392 b2392 1.10 1.15 0.36 1.23 1.11 1.33 0.87 1.22 putative transport system permease b2393 nupC 0.94 1.04 1.37 0.84 1.14 0.92 1.12 0.97 permease of transport system for 3 nucleosides b2394 yi81_3 1.00 0.81 1.23 1.13 0.86 0.99 1.01 0.99 IS186 hypothetical protein b2395 yfeA 1.03 1.22 1.03 1.01 1.09 1.13 1.04 "orf, hypothetical protein" b2398 yfeC 0.99 0.67 1.16 0.98 1.01 1.05 0.94 1.01 "orf, hypothetical protein" b2399 yfeD 0.99 1.09 0.93 0.91 0.97 0.94 1.00 0.94 "orf, hypothetical protein" b2400 gltX 0.69 0.74 0.84 0.90 0.80 0.71 0.85 "glutamate tRNA synthetase, catalytic subunit" b2405 xapR 1.11 1.30 1.30 1.07 1.04 0.83 1.24 0.98 regulator for xapA b2406 xapB 1.28 1.35 0.98 1.06 1.08 1.32 1.04 xanthosine permease b2407 xapA 1.52 1.05 1.13 0.97 1.10 1.29 1.07 xanthosine phosphorylase b2408 yfeN 0.77 1.00 0.78 1.02 0.77 0.93 putative sugar hydrolase b2409 yfeR 0.99 1.18 1.00 1.06 0.86 1.11 1.06 1.01 putative transcriptional regulator LYSR-type b2410 yfeH 0.93 0.75 1.47 0.88 0.83 0.94 1.05 0.88 putative cytochrome oxidase b2411 lig 1.46 0.94 1.11 0.94 0.92 1.07 1.17 0.98 DNA ligase b2412 zipA 2.46 0.97 1.20 1.24 1.50 1.58 1.54 1.44 cell division protein involved in FtsZ ring b2413 cysZ 0.96 0.92 1.28 1.08 0.79 1.12 1.05 1.00 required for sulfate transport b2414 cysK 0.69 0.67 1.03 0.80 1.28 0.76 0.80 0.95 "cysteine synthase A, O-acetylserine sulfhydrolase A" b2415 ptsH 0.77 0.93 0.46 0.54 0.94 0.93 0.72 0.80 PTS system protein HPr b2416 ptsI 0.67 0.46 0.62 0.86 0.94 0.57 0.81 PEP-protein phosphotransferase system enzyme I b2417 crr 1.13 0.86 1.00 0.80 0.82 1.18 1.00 0.93 "PTS system, glucose-specific IIA component" b2418 pdxK 0.97 1.18 0.71 1.07 1.08 1.12 0.95 1.09 pyridoxal/pyridoxine/pyridoxamine kinase b2419 yfeK 1.16 1.22 1.89 0.91 0.98 0.92 1.42 0.94 "orf, hypothetical protein" b2420 b2420 1.15 1.61 0.77 0.92 0.78 1.38 0.82 "orf, hypothetical protein" b2421 cysM 0.72 0.65 1.03 0.81 0.86 0.83 0.80 0.83 "cysteine synthase B, O-acetylserine sulfhydrolase B" b2422 cysA 0.83 0.63 1.35 0.67 0.86 0.89 0.94 0.81 ATP-binding component of sulfate permease A protein; chromate resistance b2423 cysW 0.93 0.80 1.32 0.78 0.96 0.86 1.02 0.87 sulfate transport system permease W protein b2424 cysU 0.77 0.72 1.39 0.66 0.94 0.86 0.96 0.82 "sulfate, thiosulfate transport system permease T protein" b2425 cysP 0.73 0.69 1.00 0.61 0.90 0.70 0.81 0.74 thiosulfate binding protein b2426 ucpA 0.82 0.77 0.93 1.01 0.82 0.90 putative oxidoreductase b2427 yfeT 0.77 1.19 1.06 1.02 0.90 0.91 1.01 0.94 "orf, hypothetical protein" b2428 yfeU 1.01 1.04 0.82 0.93 0.89 0.99 0.96 0.94 putative regulator b2429 b2429 1.13 1.15 0.94 1.03 1.11 1.14 1.03 putative PTS enzyme II b2430 b2430 1.09 1.18 1.32 1.00 1.09 1.12 1.20 1.07 putative beta-lactamase b2431 b2431 0.92 1.37 0.88 0.85 0.82 1.15 0.85 "orf, hypothetical protein" b2432 b2432 1.16 0.94 0.81 0.96 1.00 1.02 0.97 0.99 "orf, hypothetical protein" b2433 b2433 1.14 0.98 0.91 0.92 0.75 1.06 0.86 "orf, hypothetical protein" b2434 b2434 1.08 1.15 0.96 0.93 1.00 0.97 1.06 0.97 "orf, hypothetical protein" b2435 amiA 1.14 0.70 0.88 1.02 0.87 0.92 0.92 N-acetylmuramoyl-l-alanine amidase I b2436 hemF 0.99 1.13 0.67 1.02 0.79 1.11 0.93 0.97 coproporphyrinogen III oxidase b2437 yfeG 1.20 0.89 0.96 0.92 1.02 1.05 0.97 putative ARAC-type regulatory protein b2438 b2438 1.04 1.18 0.87 0.99 0.82 0.91 1.03 0.91 "orf, hypothetical protein" b2439 b2439 0.92 1.14 0.78 1.16 0.98 1.11 0.95 1.08 "orf, hypothetical protein" b2440 eutC 0.91 0.75 0.76 1.05 0.93 0.95 0.81 0.98 "ethanolamine ammonia-lyase, light chain" b2441 eutB 0.87 1.18 0.97 1.07 1.14 1.02 1.06 "ethanolamine ammonia-lyase, heavy chain" b2442 b2442 0.98 1.04 0.94 1.06 0.88 0.96 0.99 0.97 putative prophage integrase b2443 b2443 0.89 1.26 1.75 1.10 1.05 1.00 1.30 1.05 "orf, hypothetical protein" b2444 b2444 0.90 1.81 0.92 1.01 0.83 1.21 0.92 "orf, hypothetical protein" b2445 b2445 0.93 1.33 0.83 1.04 0.98 0.94 1.03 0.99 "orf, hypothetical protein" b2446 b2446 1.38 1.42 1.45 0.96 2.48 1.07 1.42 1.50 "orf, hypothetical protein" b2447 b2447 1.17 1.09 1.27 1.05 1.04 1.13 1.18 1.07 "orf, hypothetical protein" b2448 b2448 1.08 1.11 1.16 1.17 1.17 1.38 1.12 1.24 "orf, hypothetical protein" b2449 b2449 1.02 1.51 1.10 1.14 0.91 1.06 1.21 1.04 "orf, hypothetical protein" b2450 b2450 0.90 0.76 1.11 0.94 1.05 0.95 0.92 0.98 "orf, hypothetical protein" b2451 b2451 0.86 0.99 0.92 0.94 0.93 0.93 0.93 "orf, hypothetical protein" b2452 eutH 1.14 1.16 0.93 1.07 1.04 1.16 1.08 1.09 ethanolamine utilization; homolog of Salmonella putative transport protein b2453 eutG 1.21 0.96 0.85 1.08 1.02 1.01 1.05 "ethanolamine utilization; homolog of Salmonella enzyme, similar to iron-containing alcohol dehydrogenase" b2454 eutJ 1.12 0.92 0.98 1.23 0.89 0.91 1.01 1.01 ethanolamine utilization; homolog of Salmonella gene b2455 eutE 0.93 1.12 0.95 1.04 0.97 1.01 1.00 1.01 ethanolamine utilization; similar to acetaldehyde dehydrogenase b2456 cchB 1.13 1.27 1.18 0.88 0.88 1.01 1.19 0.92 detox protein b2457 cchA 0.96 1.10 0.95 1.03 0.94 0.84 1.00 0.94 detox protein b2458 eutI 1.09 1.28 1.05 1.17 1.06 0.85 1.14 1.03 ethanolamine utilization; homolog of Salmonella acetyl/butyryl P transferase b2459 b2459 1.08 1.24 0.93 0.91 1.07 1.08 1.08 1.02 "orf, hypothetical protein" b2460 b2460 1.30 0.95 1.05 0.92 0.93 1.13 0.97 "orf, hypothetical protein" b2461 b2461 1.04 1.06 1.16 0.96 0.96 0.91 1.09 0.94 "orf, hypothetical protein" b2462 b2462 1.02 1.30 0.97 0.94 0.83 0.86 1.10 0.88 "orf, hypothetical protein" b2463 b2463 0.58 0.39 0.81 0.77 0.82 0.49 0.80 putative multimodular enzyme b2464 talA 1.37 1.50 0.77 2.18 1.33 1.09 1.21 1.53 transaldolase A b2465 tktB 1.44 0.67 1.90 1.75 1.41 1.06 1.69 transketolase 2 isozyme b2466 b2466 0.92 1.16 1.06 1.12 1.00 1.21 1.05 1.11 "orf, hypothetical protein" b2467 yffH 0.87 1.07 1.01 1.05 1.08 0.97 0.98 1.03 "orf, hypothetical protein" b2468 yffG 0.96 0.98 0.55 1.14 0.82 1.04 0.83 1.00 "putative oxidoreductase, Fe-S subunit" b2469 narQ 1.30 1.59 0.96 1.00 1.09 1.44 1.02 "sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL)" b2470 acrD 1.08 1.08 0.86 1.22 1.08 1.05 "sensitivity to acriflavine, integral membrane protein, possible efflux pump" b2471 yffB 0.88 0.84 0.50 0.98 0.92 0.97 0.74 0.96 "orf, hypothetical protein" b2472 dapE 0.91 1.13 0.66 0.92 0.76 1.05 0.90 0.91 N-succinyl-diaminopimelate deacylase b2473 ypfH 0.97 1.27 1.12 1.13 1.00 1.05 1.12 1.06 "orf, hypothetical protein" b2474 ypfI 1.14 0.95 1.16 1.07 1.10 1.05 1.08 1.07 "orf, hypothetical protein" b2475 b2475 1.03 1.02 1.47 1.18 1.06 1.17 1.17 1.14 "orf, hypothetical protein" b2476 purC 0.75 0.69 1.02 0.76 0.90 1.07 0.82 0.91 phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase b2477 nlpB 1.32 0.85 0.82 1.03 0.92 1.02 1.00 0.99 lipoprotein-34 b2478 dapA 0.77 0.64 0.79 1.03 0.87 1.08 0.73 0.99 dihydrodipicolinate synthase b2479 gcvR 1.12 0.91 1.22 1.30 0.91 1.01 1.14 transcriptional regulation of gcv operon b2480 bcp 0.94 0.69 1.35 1.18 1.26 1.29 0.99 1.24 bacterioferritin comigratory protein b2481 hyfA 0.94 0.87 1.14 1.03 0.89 1.17 0.98 1.03 hydrogenase 4 Fe-S subunit b2482 hyfB 0.97 1.19 1.32 0.98 0.84 0.96 1.16 0.93 hydrogenase 4 membrane subunit b2483 hyfC 0.84 1.21 1.19 1.04 0.91 0.89 1.08 0.95 hydrogenase 4 membrane subunit b2484 hyfD 1.12 1.26 1.14 1.05 1.05 1.05 1.17 1.05 hydrogenase 4 membrane subunit b2485 hyfE 0.93 1.31 1.06 1.09 0.92 1.18 1.10 1.06 hydrogenase 4 membrane subunit b2486 hyfF 1.00 1.26 1.15 1.04 0.93 1.00 1.14 0.99 hydrogenase 4 membrane subunit b2487 hyfG 1.09 1.00 1.06 1.06 1.31 1.05 1.14 hydrogenase 4 subunit b2488 hyfH 1.03 1.31 0.95 1.14 0.70 1.05 1.10 0.96 hydrogenase 4 Fe-S subunit b2489 hyfI 1.06 1.08 0.97 1.11 0.90 0.87 1.04 0.96 hydrogenase 4 Fe-S subunit b2490 b2490 0.94 1.10 1.16 1.12 0.61 0.85 1.07 0.86 putative protein processing element b2491 hyfR 1.05 1.51 1.15 1.02 1.09 1.24 1.06 "putative 2-component regulator, interaction with sigma 54" b2492 focB 0.92 1.14 1.03 1.13 1.55 0.93 1.03 1.20 probable formate transporter (formate channel 2) b2493 perM 1.01 1.11 1.02 0.98 0.88 1.11 1.05 0.99 putative permease b2494 b2494 1.15 1.03 1.19 1.05 1.10 1.06 1.12 1.07 "orf, hypothetical protein" b2495 b2495 0.94 1.19 0.93 0.89 0.83 1.02 1.02 0.91 putative oxidoreductase b2496 b2496 0.88 0.60 1.05 1.01 0.87 0.95 0.84 0.94 putative DNA replication factor b2497 uraA 0.49 0.36 1.19 0.85 0.74 0.68 0.80 uracil transport b2498 upp 0.53 0.56 1.25 0.57 0.85 0.75 0.78 0.72 uracil phosphoribosyltransferase b2499 purM 0.89 0.70 0.85 1.14 1.14 1.18 0.81 1.15 phosphoribosylaminoimidazole synthetase = AIR synthetase b2500 purN 0.76 0.76 1.01 0.97 0.87 0.76 0.95 phosphoribosylglycinamide formyltransferase 1 b2501 ppk 1.02 1.01 0.79 1.14 1.03 0.94 0.94 1.04 polyphosphate kinase b2502 ppx 1.19 0.99 0.81 1.09 1.00 1.02 1.00 1.04 exopolyphosphatase b2503 b2503 1.23 1.03 0.97 0.99 0.86 1.13 0.94 putative cytochrome C-type biogenesis protein b2504 b2504 1.17 1.30 3.13 1.04 1.14 1.10 1.87 1.09 "orf, hypothetical protein" b2505 b2505 1.04 0.94 1.12 1.12 0.96 1.06 1.03 1.05 putative outer membrane lipoprotein b2506 b2506 0.95 1.34 1.28 0.97 0.93 1.02 1.19 0.97 putative membrane protein b2507 guaA 0.71 0.48 0.56 0.89 1.07 0.90 0.58 0.95 GMP synthetase (glutamine-hydrolyzing) b2508 guaB 0.71 0.58 0.93 0.91 0.98 0.74 0.95 IMP dehydrogenase b2509 xseA 1.08 1.01 0.93 1.26 0.80 1.05 1.00 "exonuclease VII, large subunit" b2510 b2510 0.86 0.96 1.04 0.88 0.87 0.91 0.93 "orf, hypothetical protein" b2511 b2511 0.83 1.00 0.94 0.87 1.00 0.92 0.94 putative GTP-binding factor b2512 b2512 0.85 0.80 0.83 0.78 0.83 0.82 0.83 0.81 putative dehydrogenase b2513 b2513 1.20 0.82 0.74 0.81 0.96 0.78 0.92 0.85 "orf, hypothetical protein" b2514 hisS 0.78 0.82 0.76 0.79 0.97 0.75 0.79 0.84 histidine tRNA synthetase b2515 gcpE 0.98 0.80 0.80 0.82 0.96 0.87 0.86 0.88 "orf, hypothetical protein" b2516 yfgA 1.01 0.95 1.06 1.09 1.21 1.03 1.01 1.11 putative membrane protein b2517 yfgB 0.83 0.89 1.10 0.94 0.80 0.80 0.94 0.85 "orf, hypothetical protein" b2518 ndk 0.44 1.10 0.48 0.60 0.67 0.77 0.58 nucleoside diphosphate kinase b2519 pbpC 1.14 1.08 1.01 1.12 1.28 1.14 1.08 1.18 putative peptidoglycan enzyme b2520 b2520 1.07 1.05 0.92 1.13 1.06 1.03 "orf, hypothetical protein" b2521 sseA 1.12 1.30 0.84 1.14 1.03 1.12 1.09 1.10 putative thiosulfate sulfurtransferase b2522 sseB 0.86 0.81 0.73 0.91 0.79 0.87 0.80 0.86 enhanced serine sensitivity b2523 pepB 1.01 0.77 1.20 1.01 0.94 0.89 1.05 putative peptidase b2524 yfhJ 0.97 0.57 1.10 0.91 0.88 0.87 0.88 0.89 "orf, hypothetical protein" b2525 fdx 0.89 0.84 0.84 1.17 0.70 1.00 0.86 0.96 "[2FE-2S] ferredoxin, electron carrer protein" b2526 hscA 0.84 0.65 0.85 0.97 0.85 0.93 0.78 0.92 "heat shock protein, chaperone, member of Hsp70 protein family" b2527 yfhE 0.84 0.68 0.49 1.13 0.89 0.91 0.67 0.98 "orf, hypothetical protein" b2528 yfhF 0.90 0.90 0.70 1.07 0.89 1.02 0.83 0.99 putative regulator b2529 b2529 0.83 0.91 0.74 1.13 0.85 1.08 0.83 1.02 "orf, hypothetical protein" b2530 yfhO 0.75 0.84 0.59 1.21 0.99 1.05 0.73 1.08 putative aminotransferase b2531 b2531 0.77 0.77 0.34 1.25 0.94 1.10 0.63 1.10 "orf, hypothetical protein" b2532 b2532 0.80 0.61 0.96 0.86 0.72 0.82 0.79 0.80 putative ATP synthase beta subunit b2533 suhB 0.73 0.62 2.33 0.65 0.74 0.79 1.23 0.73 "enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action" b2534 b2534 0.94 1.31 1.04 0.90 1.01 1.02 1.10 0.98 putative enzyme (3.4.-) b2535 csiE 1.10 1.40 0.98 1.08 1.10 1.05 1.16 1.08 "orf, hypothetical protein" b2536 hcaT 0.91 1.21 1.23 0.97 0.83 0.96 1.12 0.92 MFS (major facilitator superfamily) transporter b2537 hcaR 0.90 0.97 0.85 0.78 0.92 1.07 0.91 0.92 transcriptional activator of hca cluster b2538 hcaA1 1.30 1.47 1.11 0.98 1.16 1.39 1.08 large terminal subunit of phenylpropionate dioxygenase b2539 hcaA2 0.78 1.05 0.93 0.90 1.01 0.92 0.95 small terminal subunit of phenylpropionate dioxygenase b2540 hcaC 1.12 1.34 0.90 1.19 0.85 1.07 1.12 1.04 ferredoxin subunit of phenylpropionate dioxygenase b2541 hcaB 0.92 1.36 0.75 1.10 0.82 0.96 1.01 0.96 "2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase" b2542 hcaD 0.90 1.29 0.98 0.88 0.84 1.01 1.06 0.91 ferredoxin reductase subunit of phenylpropionate dioxygenase b2543 yphA 1.24 1.49 1.19 1.35 1.02 1.31 1.31 1.23 "orf, hypothetical protein" b2544 yphB 1.09 1.19 1.15 1.06 0.98 1.09 1.14 1.04 "orf, hypothetical protein" b2545 yphC 1.05 1.01 1.13 0.84 1.10 1.03 1.02 putative oxidoreductase b2546 yphD 0.96 1.16 0.99 1.06 0.87 0.94 1.04 0.96 putative transport system permease protein b2547 yphE 0.97 1.26 1.09 1.02 0.85 0.91 1.11 0.93 putative ATP-binding component of a transport system b2548 yphF 1.09 1.30 1.04 1.11 0.94 1.10 1.14 1.05 putative LACI-type transcriptional regulator b2549 yphG 0.98 1.26 1.06 1.06 0.98 1.18 1.10 1.07 "orf, hypothetical protein" b2550 yphH 0.88 1.26 1.15 1.09 0.94 1.14 1.10 1.06 putative NAGC-like transcriptional regulator b2551 glyA 0.63 0.69 0.58 0.90 0.87 0.82 0.63 0.86 serine hydroxymethyltransferase b2552 hmpA 0.88 0.97 0.87 0.89 1.08 1.08 0.91 1.02 "dihydropteridine reductase, ferrisiderophore reductase activity" b2553 glnB 0.76 1.06 1.23 1.04 0.89 1.12 1.02 1.02 regulatory protein P-II for glutamine synthetase b2554 yfhA 0.96 0.94 1.11 1.02 0.99 0.95 1.04 putative 2-component transcriptional regulator b2555 yfhG 0.89 1.03 0.87 1.04 0.88 0.94 0.93 0.95 putative alpha helix protein b2556 yfhK 1.06 1.30 1.06 1.13 0.94 1.11 1.14 1.06 putative 2-component sensor protein b2557 purL 0.74 0.71 0.74 0.79 1.03 0.69 0.73 0.84 phosphoribosylformyl-glycineamide synthetase = FGAM synthetase b2558 yfhD 1.04 1.16 1.72 0.99 0.85 1.13 1.31 0.99 putative periplasmic binding transport protein b2559 yfhC 0.95 0.99 1.43 0.99 1.05 1.13 1.12 1.06 putative deaminase b2560 yfhB 0.99 1.28 1.27 1.02 0.85 0.95 1.18 0.94 "orf, hypothetical protein" b2561 yfhH 1.08 1.20 1.12 1.08 0.96 0.91 1.13 0.98 "orf, hypothetical protein" b2562 yfhL 0.97 1.33 1.23 1.13 0.80 0.94 1.18 0.96 "orf, hypothetical protein" b2563 acpS 0.90 0.82 0.93 1.00 1.02 1.17 0.88 1.06 CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase b2564 pdxJ 1.14 0.93 0.93 0.88 1.00 1.09 1.00 0.99 pyridoxine biosynthesis b2565 recO 0.97 1.14 1.02 0.93 1.03 0.97 1.04 0.98 protein interacts with RecR and possibly RecF proteins b2566 era 1.02 0.97 0.85 0.90 1.09 1.05 0.95 1.01 GTP-binding protein b2567 rnc 0.77 0.68 1.01 0.96 1.15 0.95 0.82 1.02 "RNase III, ds RNA" b2568 lepB 0.79 0.73 0.85 0.94 0.79 0.84 leader peptidase (signal peptidase I) b2569 lepA 0.88 0.99 0.76 0.85 0.90 0.92 0.88 0.89 "GTP-binding elongation factor, may be inner membrane protein" b2570 rseC 1.11 0.94 0.90 0.98 1.11 0.86 0.98 0.98 "sigma-E factor, negative regulatory protein" b2571 rseB 1.24 1.24 0.95 1.18 1.21 1.08 1.14 1.16 regulates activity of sigma-E factor b2572 rseA 1.55 1.49 1.64 1.31 1.24 1.38 1.56 1.31 "sigma-E factor, negative regulatory protein" b2573 rpoE 1.61 1.27 1.79 1.39 1.43 1.54 1.56 1.45 "RNA polymerase, sigma-E factor; heat shock and oxidative stress" b2574 nadB 0.98 1.18 1.15 1.01 0.97 0.85 1.10 0.94 "quinolinate synthetase, B protein" b2575 yfiC 1.05 1.01 1.15 0.98 0.97 0.97 1.07 0.97 putative enzyme b2576 srmB 0.91 0.69 0.73 1.03 0.80 0.80 0.85 ATP-dependent RNA helicase b2577 yfiE 0.97 1.35 0.91 0.97 0.90 0.98 1.08 0.95 putative transcriptional regulator LYSR-type b2578 yfiK 0.74 1.38 1.49 0.95 0.93 0.97 1.20 0.95 "orf, hypothetical protein" b2579 yfiD 1.09 1.37 1.04 0.95 1.01 1.35 1.17 1.10 putative formate acetyltransferase b2580 ung 0.62 0.80 0.97 1.16 1.07 0.71 1.07 uracil-DNA-glycosylase b2581 yfiF 0.91 0.76 0.97 0.84 0.90 0.95 0.88 0.90 "orf, hypothetical protein" b2582 trxC 1.16 1.27 0.94 0.93 0.94 1.21 0.94 putative thioredoxin-like protein b2583 yfiP 1.00 1.28 0.91 0.90 0.98 0.88 1.06 0.92 "orf, hypothetical protein" b2584 yfiQ 1.11 0.96 1.00 1.10 1.12 1.04 1.07 "orf, hypothetical protein" b2585 pssA 1.20 0.99 1.25 0.86 1.18 0.94 1.15 0.99 phosphatidylserine synthase; phospholipid synthesis b2586 yfiM 0.79 1.15 1.11 0.94 1.00 0.97 1.02 "orf, hypothetical protein" b2587 kgtP 1.12 1.05 0.76 1.24 1.38 1.40 0.98 1.34 alpha-ketoglutarate permease b2592 clpB 0.99 0.81 1.08 1.07 1.05 1.14 0.96 1.09 heat shock protein b2593 yfiH 1.02 0.93 1.00 1.01 0.82 0.91 0.98 0.91 "orf, hypothetical protein" b2594 sfhB 0.92 0.98 1.22 1.05 1.08 0.96 1.04 1.03 suppressor of ftsH mutation b2595 b2595 0.66 1.06 0.90 1.46 0.83 0.86 1.06 "orf, hypothetical protein" b2596 b2596 0.98 1.51 1.15 1.05 0.91 0.95 1.21 0.97 "orf, hypothetical protein" b2597 yfiA 1.34 1.11 1.79 1.12 1.39 1.68 1.41 1.40 putative yhbH sigma 54 modulator b2598 pheL 0.90 1.29 0.86 0.91 0.92 0.83 1.02 0.89 leader peptide of chorismate mutase-P-prephenate dehydratase b2599 pheA 0.78 0.94 0.78 0.93 1.05 0.83 0.83 0.94 chorismate mutase-P and prephenate dehydratase b2600 tyrA 0.57 0.63 0.23 0.55 0.75 0.63 0.48 0.64 chorismate mutase-T and prephenate dehydrogenase b2601 aroF 0.51 0.46 0.16 0.54 0.74 0.44 0.38 0.57 "3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tyrosine repressible)" b2602 yfiL 1.43 0.93 1.10 1.00 0.98 1.18 1.03 "orf, hypothetical protein" b2603 b2603 0.91 0.97 0.96 0.98 1.24 0.96 0.95 1.06 "orf, hypothetical protein" b2604 yfiN 0.89 1.18 0.99 0.89 1.03 1.03 0.97 "orf, hypothetical protein" b2605 yfiB 1.06 0.93 0.90 1.18 1.13 1.13 0.96 1.15 putative outer membrane protein b2606 rplS 0.58 0.41 0.81 0.44 0.34 0.75 0.60 0.51 50S ribosomal subunit protein L19 b2607 trmD 0.69 0.49 0.74 0.72 0.54 0.61 0.64 0.62 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase b2608 yfjA 0.65 0.48 0.87 0.69 0.47 0.55 0.67 0.57 "orf, hypothetical protein" b2609 rpsP 0.64 0.38 0.78 0.76 0.46 0.65 0.60 0.62 30S ribosomal subunit protein S16 b2610 ffh 0.78 0.88 0.93 1.10 0.98 0.83 1.00 "GTP-binding export factor binds to signal sequence, GTP and RNA" b2611 b2611 1.01 1.07 1.08 0.92 0.84 0.89 1.05 0.88 "orf, hypothetical protein" b2612 ypjE 1.05 0.85 0.89 1.02 0.93 0.89 0.93 0.95 "orf, hypothetical protein" b2613 yfjD 1.01 0.99 1.18 1.04 0.85 1.09 1.06 0.99 putative transport protein b2614 grpE 1.04 0.75 1.89 0.87 0.96 1.04 1.23 0.96 phage lambda replication; host DNA synthesis; heat shock protein; protein repair b2615 yfjB 1.07 0.95 1.12 1.14 1.04 1.07 1.05 1.08 "orf, hypothetical protein" b2616 recN 1.09 0.99 1.09 1.03 1.04 0.94 1.06 1.00 protein used in recombination and DNA repair b2617 smpA 0.96 1.25 1.04 1.18 1.07 1.08 1.08 1.11 small membrane protein A b2618 b2618 0.86 0.89 0.83 0.85 0.81 0.89 0.86 0.85 "orf, hypothetical protein" b2619 b2619 0.93 0.68 0.91 0.76 0.85 0.89 0.84 0.83 "orf, hypothetical protein" b2620 smpB 0.81 0.60 0.79 0.86 0.99 0.87 0.73 0.91 small protein B b2622 intA 0.83 0.92 1.05 1.08 0.99 0.97 0.93 1.01 prophage CP4-57 integrase b2623 yfjH 0.90 1.10 1.22 0.99 0.92 1.09 1.07 1.00 putative histone b2624 alpA 0.99 1.42 0.77 0.96 0.89 0.89 1.06 0.91 prophage CP4-57 regulatory protein alpA b2625 yfjI 0.92 1.24 1.01 0.87 0.90 1.08 0.93 "orf, hypothetical protein" b2626 yfjJ 0.89 1.15 1.01 1.02 0.82 0.86 1.02 0.90 "orf, hypothetical protein" b2627 yfjK 1.00 1.07 0.97 1.12 0.87 0.86 1.01 0.95 "orf, hypothetical protein" b2628 yfjL 1.15 1.08 0.92 0.93 0.89 0.96 1.05 0.93 "orf, hypothetical protein" b2629 yfjM 0.98 1.65 0.94 1.04 0.88 0.88 1.19 0.93 "orf, hypothetical protein" b2630 yfjN 1.00 1.03 1.05 0.98 1.00 1.02 putative cell division protein b2631 yfjO 1.22 1.20 0.98 0.87 0.99 1.21 0.95 "orf, hypothetical protein" b2632 yfjP 1.12 1.35 1.61 0.95 0.90 1.12 1.36 0.99 putative GTP-binding protein b2633 yfjQ 0.99 1.21 1.43 1.06 0.91 0.98 1.21 0.98 "orf, hypothetical protein" b2634 yfjR 1.44 1.54 0.89 1.19 1.01 1.49 1.03 "orf, hypothetical protein" b2635 b2635 1.09 0.97 1.00 0.80 0.94 1.03 0.91 "orf, hypothetical protein" b2636 b2636 1.01 1.00 0.88 1.18 0.77 1.12 0.96 1.02 "orf, hypothetical protein" b2637 yfjT 1.04 1.09 1.03 1.08 0.90 0.92 1.05 0.97 "orf, hypothetical protein" b2638 b2638 1.02 1.37 1.12 1.08 0.76 0.93 1.17 0.92 "orf, hypothetical protein" b2639 b2639 1.10 1.28 1.09 1.11 0.91 1.16 1.01 putative pump protein b2640 b2640 1.15 1.14 0.85 1.01 0.97 0.95 1.05 0.98 "orf, hypothetical protein" b2641 b2641 0.95 1.19 0.83 0.97 0.84 0.87 0.99 0.89 "orf, hypothetical protein" b2642 yfjW 0.99 1.18 1.75 1.10 0.93 1.12 1.31 1.05 "orf, hypothetical protein" b2643 yfjX 0.93 1.26 0.96 0.93 0.90 0.89 1.05 0.91 "orf, hypothetical protein" b2644 yfjY 0.74 1.17 1.04 1.11 0.88 1.12 0.98 1.04 putative DNA repair protein b2645 yfjZ 1.22 1.28 1.04 1.06 0.99 0.98 1.18 1.01 "orf, hypothetical protein" b2646 ypjF 1.02 1.06 1.01 0.90 1.03 1.04 0.98 "orf, hypothetical protein" b2647 ypjA 0.88 1.43 1.04 1.48 1.08 1.16 1.20 putative ATP-binding component of a transport system b2648 b2648 1.05 1.40 0.88 1.07 0.89 0.90 1.11 0.95 "orf, hypothetical protein" b2649 b2649 1.26 0.99 1.01 1.02 1.00 1.13 1.01 "orf, hypothetical protein" b2650 b2650 0.92 1.15 1.15 1.01 0.96 0.94 1.07 0.97 "orf, hypothetical protein" b2651 b2651 0.59 1.07 0.96 0.96 0.59 1.00 "orf, hypothetical protein" b2653 b2653 0.97 1.46 1.09 0.94 1.07 0.95 1.17 0.99 "orf, hypothetical protein" b2654 b2654 0.83 0.98 0.97 0.97 0.83 0.97 "orf, hypothetical protein" b2655 b2655 0.93 1.26 0.87 1.00 0.91 0.91 1.02 0.94 "orf, hypothetical protein" b2656 b2656 1.05 0.78 1.14 0.90 0.99 0.91 1.01 "orf, hypothetical protein" b2657 b2657 2.28 0.89 1.01 0.88 0.91 1.59 0.93 putative enzyme b2658 b2658 1.02 1.72 1.20 1.14 0.85 1.00 1.31 1.00 "orf, hypothetical protein" b2659 b2659 1.12 1.36 1.47 2.41 1.23 1.20 1.32 1.61 "orf, hypothetical protein" b2660 ygaF 1.13 1.24 1.06 1.71 1.37 1.24 1.14 1.44 "orf, hypothetical protein" b2661 gabD 1.82 2.18 1.39 2.23 1.48 1.68 1.80 1.80 "succinate-semialdehyde dehydrogenase, NADP-dependent activity" b2662 gabT 2.53 3.03 1.32 1.01 1.04 2.78 1.12 4-aminobutyrate aminotransferase activity b2663 gabP 1.69 2.08 2.63 1.91 1.18 1.32 2.13 1.47 transport permease protein of gamma-aminobutyrate b2664 ygaE 1.31 1.67 2.33 1.37 1.25 1.40 1.77 1.34 putative transcriptional regulator b2665 ygaU 1.54 1.57 3.03 1.50 1.02 1.36 2.05 1.29 "orf, hypothetical protein" b2666 b2666 1.02 1.20 1.03 0.96 1.08 1.05 1.08 1.03 "orf, hypothetical protein" b2667 b2667 0.98 1.22 1.03 0.93 0.82 0.90 1.08 0.88 "orf, hypothetical protein" b2668 ygaP 0.91 1.20 1.09 0.93 0.86 0.97 1.07 0.92 "orf, hypothetical protein" b2669 stpA 0.61 0.48 0.89 1.08 0.99 0.91 0.66 0.99 DNA-binding protein; H-NS-like protein; chaperone activity; RNA splicing? b2670 b2670 1.17 1.23 1.08 1.04 1.01 1.00 1.16 1.02 "orf, hypothetical protein" b2671 ygaC 1.28 1.06 1.09 1.06 1.07 1.17 1.07 "orf, hypothetical protein" b2672 ygaM 2.23 1.59 1.67 1.31 1.55 1.91 1.51 "orf, hypothetical protein" b2673 nrdH 1.13 0.36 0.97 0.91 1.03 0.74 0.97 glutaredoxin-like protein; hydrogen donor b2674 nrdI 0.92 1.02 0.15 0.94 0.99 0.90 0.70 0.94 "orf, hypothetical protein" b2675 nrdE 1.11 1.06 0.13 0.99 0.81 0.96 0.77 0.92 "ribonucleoside-diphosphate reductase 2, alpha subunit" b2676 nrdF 1.23 0.19 0.88 0.94 0.71 0.71 0.84 "ribonucleoside-diphosphate reductase 2, beta chain, frag" b2677 proV 0.34 0.16 0.13 0.43 0.67 0.56 0.21 0.55 "ATP-binding component of transport system for glycine, betaine and proline" b2678 proW 0.20 0.19 0.13 0.45 0.77 0.51 0.17 0.58 high-affinity transport system for glycine betaine and proline b2679 proX 0.19 0.94 0.38 0.71 0.45 0.57 0.51 high-affinity transport system for glycine betaine and proline b2680 b2680 1.21 1.09 1.02 0.93 1.00 1.15 0.98 "orf, hypothetical protein" b2681 b2681 0.97 1.30 1.04 0.99 0.94 1.13 0.99 putative transport protein b2682 b2682 0.80 0.72 0.71 0.71 1.04 0.82 0.74 0.86 "orf, hypothetical protein" b2683 ygaH 0.56 0.62 0.87 0.89 0.86 0.59 0.87 "orf, hypothetical protein" b2684 emrR 0.75 0.71 0.72 0.78 0.85 0.82 0.73 0.82 regulator of plasmid mcrB operon (microcin B17 synthesis) b2685 emrA 0.97 0.80 0.83 0.81 0.81 0.76 0.87 0.79 multidrug resistance secretion protein b2686 emrB 0.96 1.36 0.93 0.95 0.81 0.93 1.08 0.90 multidrug resistance; probably membrane translocase b2687 ygaG 1.73 1.65 1.49 1.80 1.39 1.81 1.62 1.67 "orf, hypothetical protein" b2688 gshA 1.15 1.09 1.01 1.11 1.17 1.23 1.08 1.17 gamma-glutamate-cysteine ligase b2689 b2689 1.02 0.82 0.87 1.12 0.82 0.91 0.90 0.95 "orf, hypothetical protein" b2690 yqaB 1.03 0.84 0.66 0.98 0.92 0.88 0.84 0.93 putative phosphatase b2696 csrA 1.04 1.11 1.11 0.88 1.06 1.31 1.09 1.08 "carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties" b2697 alaS 0.94 0.83 0.75 0.60 0.94 0.73 alanyl-tRNA synthetase b2698 oraA 0.97 1.06 0.75 0.93 0.96 0.98 0.93 0.96 "regulator, OraA protein" b2699 recA 0.86 0.74 0.85 0.90 0.78 0.98 0.82 0.89 "DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease" b2700 ygaD 0.87 0.82 1.03 1.00 0.90 0.96 0.91 0.95 "orf, hypothetical protein" b2701 mltB 1.06 0.89 1.30 1.16 1.10 1.17 1.08 1.14 membrane-bound lytic murein transglycosylase B b2702 srlA 1.18 0.92 0.97 0.96 1.05 1.05 0.99 "PTS system, glucitol/sorbitol-specific IIC component, one of two" b2703 srlE 1.01 1.21 1.09 1.03 1.10 0.99 1.10 1.04 "PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components" b2704 srlB 1.18 0.52 1.01 1.00 1.02 0.85 1.01 "PTS system, glucitol/sorbitol-specific enzyme IIA component" b2705 srlD 1.08 1.16 0.89 0.98 0.97 1.07 1.04 1.01 glucitol (sorbitol)-6-phosphate dehydrogenase b2706 gutM 1.28 0.99 1.06 0.99 1.15 1.14 1.07 glucitol operon activator b2707 srlR 1.00 1.44 0.88 1.05 1.15 1.07 1.11 1.09 "regulator for gut (srl), glucitol operon" b2708 gutQ 1.05 1.24 0.87 1.04 1.01 0.93 1.05 0.99 "orf, hypothetical protein" b2709 ygaA 1.00 1.15 1.08 1.08 0.92 1.14 1.08 1.05 putative 2-component transcriptional regulator b2710 b2710 1.02 1.26 1.12 1.00 1.61 0.82 1.13 1.14 putative flavodoxin b2711 ygbD 1.54 0.85 0.89 1.04 1.08 1.20 1.00 putative oxidoreductase b2712 hypF 1.06 1.33 1.22 0.98 1.12 1.13 1.20 1.08 transcriptional regulatory protein b2713 hydN 0.94 1.13 1.14 1.03 0.97 1.03 1.07 1.01 "involved in electron transport from formate to hydrogen, Fe-S centers" b2714 ascG 1.12 1.22 0.85 0.95 1.02 0.99 1.06 0.99 ascBF operon repressor b2715 ascF 1.08 1.11 1.02 1.03 1.03 0.96 1.07 1.01 "PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides" b2716 ascB 1.14 1.13 0.98 0.93 1.00 1.01 1.08 0.98 6-phospho-beta-glucosidase; cryptic b2717 hycI 0.98 0.80 1.15 1.04 0.99 0.97 0.98 1.00 protease involved in processing C-terminal end of the large subunit of hydrogenase 3 b2718 hycH 1.34 0.97 0.99 1.06 1.00 1.16 1.02 processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex) b2719 hycG 1.10 1.19 0.69 1.07 1.01 1.22 0.99 1.10 hydrogenase activity b2720 hycF 0.97 1.05 1.09 1.03 1.01 0.95 1.04 1.00 probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) b2721 hycE 1.26 1.14 1.04 1.01 1.05 1.20 1.03 large subunit of hydrogenase 3 (part of FHL complex) b2722 hycD 1.14 1.08 1.06 0.90 0.83 0.97 1.09 0.90 membrane-spanning protein of hydrogenase 3 (part of FHL complex) b2723 hycC 0.97 1.16 1.05 0.88 0.96 1.07 0.96 membrane-spanning protein of hydrogenase 3 (part of FHL complex) b2724 hycB 1.11 0.78 0.98 0.86 1.04 0.94 0.96 "probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex)" b2725 hycA 1.05 1.04 1.05 0.88 0.97 1.05 0.97 transcriptional repression of hyc and hyp operons b2726 hypA 1.58 1.42 0.85 1.09 0.92 1.16 1.28 1.06 pleiotrophic effects on 3 hydrogenase isozymes b2727 hypB 1.12 1.44 1.11 1.25 0.74 1.11 1.22 1.03 "guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3" b2728 hypC 0.97 1.03 1.11 0.93 0.96 1.00 1.00 pleiotrophic effects on 3 hydrogenase isozymes b2729 hypD 1.03 0.77 1.49 1.18 0.92 1.12 1.10 1.07 pleiotrophic effects on 3 hydrogenase isozymes b2730 hypE 1.07 1.35 1.37 1.07 0.82 1.20 1.26 1.03 plays structural role in maturation of all 3 hydrogenases b2731 fhlA 1.25 1.66 1.49 1.19 1.17 1.13 1.47 1.16 "formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons" b2732 ygbA 0.98 1.04 1.03 1.00 0.89 0.91 1.02 0.93 "orf, hypothetical protein" b2733 mutS 0.97 1.05 0.60 1.06 0.98 1.07 0.87 1.04 methyl-directed mismatch repair b2734 pphB 0.98 1.35 0.92 1.11 0.94 1.09 1.08 1.05 protein phosphatase 2 b2735 ygbI 1.09 1.06 1.30 1.10 0.92 1.17 1.15 1.06 putative DEOR-type transcriptional regulator b2736 b2736 0.99 1.14 1.16 1.07 0.90 0.99 1.10 0.99 putative dehydrogenase b2737 b2737 0.94 1.13 1.10 0.99 1.05 1.04 1.06 1.03 "orf, hypothetical protein" b2738 ygbL 1.22 1.04 1.08 1.02 1.00 1.13 1.03 putative epimerase/aldolase b2739 ygbM 0.99 1.37 1.10 0.92 0.91 0.89 1.15 0.91 "orf, hypothetical protein" b2740 b2740 1.06 1.53 1.18 0.92 1.11 1.30 1.07 putative transport protein b2741 rpoS 1.27 0.87 1.76 1.50 1.89 1.07 1.72 "RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins" b2742 nlpD 1.68 1.63 0.83 1.38 2.23 1.56 1.38 1.72 lipoprotein b2743 pcm 0.87 0.63 1.09 1.01 0.93 0.75 1.01 L-isoaspartate protein carboxylmethyltransferase type II b2744 surE 0.86 0.82 0.65 0.92 0.87 0.84 0.78 0.88 survival protein b2745 ygbO 0.95 0.98 0.62 0.99 0.89 0.90 0.85 0.93 putative hydrogenase subunit b2746 ygbB 0.75 0.71 1.11 1.05 0.99 0.73 1.05 "orf, hypothetical protein" b2747 ygbP 0.63 0.68 1.05 0.98 0.85 0.66 0.96 "orf, hypothetical protein" b2748 b2748 0.97 1.05 1.05 1.04 1.02 1.01 1.04 "orf, hypothetical protein" b2749 ygbE 0.89 1.64 0.83 0.90 1.11 0.95 1.12 0.99 putative cytochrome oxidase subunit b2750 cysC 0.68 0.51 0.69 0.70 0.89 0.65 0.63 0.75 adenosine 5'-phosphosulfate kinase b2751 cysN 0.60 0.55 0.47 0.64 0.73 0.59 0.54 0.65 "ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase" b2752 cysD 0.62 0.47 0.72 1.07 0.65 0.54 0.81 "ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2" b2753 iap 1.02 1.03 0.92 1.13 1.11 1.03 0.99 1.09 "alkaline phosphatase isozyme conversion, aminopeptidase" b2754 ygbF 1.01 1.26 1.00 1.04 0.91 0.96 1.09 0.97 "orf, hypothetical protein" b2755 b2755 1.16 1.11 1.05 0.88 1.04 1.14 0.99 "orf, hypothetical protein" b2756 b2756 0.91 1.12 1.04 1.02 0.89 0.96 1.02 0.96 "orf, hypothetical protein" b2757 b2757 1.23 0.79 1.09 1.00 1.07 1.01 1.05 "orf, hypothetical protein" b2758 b2758 1.05 1.21 0.83 0.94 1.06 1.00 1.03 1.00 "orf, hypothetical protein" b2759 ygcK 1.02 1.26 0.64 1.08 0.93 0.92 0.97 0.98 "orf, hypothetical protein" b2760 b2760 1.04 1.17 1.06 0.96 0.82 0.85 1.09 0.88 "orf, hypothetical protein" b2761 ygcB 1.01 1.27 1.22 1.13 0.91 1.02 1.17 1.02 "orf, hypothetical protein" b2762 cysH 0.63 0.55 0.97 0.69 0.72 0.59 0.72 0.67 3'-phosphoadenosine 5'-phosphosulfate reductase b2763 cysI 0.47 0.58 0.89 0.61 0.57 0.48 0.65 0.55 "sulfite reductase, alpha subunit" b2764 cysJ 0.48 0.43 0.70 0.63 0.59 0.44 0.54 0.55 "sulfite reductase (NADPH), flavoprotein beta subunit" b2765 ygcM 0.91 1.08 0.92 0.79 0.86 0.99 0.86 putative 6-pyruvoyl tetrahydrobiopterin synthase b2766 ygcN 1.02 1.14 1.14 0.88 0.83 0.95 1.10 0.89 "orf, hypothetical protein" b2767 ygcO 0.99 1.03 1.05 0.93 0.86 0.96 1.02 0.92 "orf, hypothetical protein" b2768 ygcP 1.11 1.05 1.02 0.98 1.02 1.08 1.01 putative anti-terminator regulatory protein b2769 ygcQ 0.78 1.32 1.10 0.98 1.13 0.93 1.07 1.01 putative flavoprotein b2770 ygcR 1.02 1.21 0.87 1.09 0.92 1.13 1.03 1.05 putative transport protein b2771 ygcS 1.12 1.19 1.14 1.03 0.99 1.04 1.15 1.02 putative transport protein b2772 b2772 1.02 1.35 0.99 0.98 0.90 0.93 1.12 0.94 "orf, hypothetical protein" b2773 ygcU 0.98 1.33 0.93 0.91 0.87 0.93 1.08 0.90 putative oxidoreductase subunit b2774 ygcW 0.97 1.11 1.05 0.86 0.97 1.01 putative oxidoreductase b2775 yqcE 1.04 1.02 1.04 0.91 1.02 1.03 0.99 putative transport protein b2776 ygcE 1.01 0.65 1.16 1.05 0.88 1.09 0.94 1.01 putative kinase b2777 ygcF 1.11 1.14 1.27 1.03 1.21 1.19 1.17 1.14 "orf, hypothetical protein" b2778 ygcG 1.04 1.06 1.03 1.05 1.04 1.05 "orf, hypothetical protein" b2779 eno 1.02 0.94 0.86 0.79 0.86 0.98 0.84 enolase b2780 pyrG 0.79 0.82 0.82 0.94 1.12 0.78 0.81 0.95 CTP synthetase b2781 mazG 1.17 1.50 1.67 1.51 1.69 1.23 1.45 1.48 "orf, hypothetical protein" b2782 chpA 1.01 1.03 0.91 0.85 0.91 1.02 0.89 "probable growth inhibitor, PemK-like, autoregulated" b2783 chpR 1.10 1.41 1.33 0.95 0.92 0.89 1.28 0.92 "suppressor of inhibitory function of ChpA, PemI-like, autoregulated" b2784 relA 1.54 1.32 1.72 2.20 1.48 1.43 1.80 (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor b2785 ygcA 1.30 1.89 1.31 1.10 1.16 1.59 1.19 putative enzyme b2786 barA 1.02 1.18 1.05 1.09 1.21 1.16 1.08 1.15 "sensor-regulator, activates OmpR by phophorylation" b2787 ygcX 0.90 1.24 1.20 1.13 0.97 1.05 1.11 1.05 putative glucarate dehydratase b2788 ygcY 1.16 1.62 1.00 0.90 0.88 1.15 1.26 0.98 putative glucarate dehydratase b2789 b2789 0.72 1.32 0.73 1.02 1.29 1.02 1.01 putative transport protein b2790 b2790 1.30 0.92 0.98 0.99 1.06 1.11 1.01 "orf, hypothetical protein" b2791 yqcB 1.52 1.04 0.88 0.95 2.17 0.74 1.15 1.29 "orf, hypothetical protein" b2792 b2792 1.04 0.90 1.05 0.97 0.93 0.97 0.98 "orf, hypothetical protein" b2793 syd 1.00 1.47 0.87 1.12 1.04 1.24 1.01 interacts with secY b2794 yqcD 0.98 0.96 1.07 1.11 0.98 1.05 "orf, hypothetical protein" b2795 ygdH 0.96 0.80 0.72 1.05 1.06 1.05 0.83 1.05 "orf, hypothetical protein" b2796 sdaC 0.83 0.78 1.09 0.77 0.83 0.98 0.90 0.86 probable serine transporter b2797 sdaB 1.05 0.97 1.06 0.93 1.03 1.02 1.03 0.99 "L-serine dehydratase (deaminase), L-SD2" b2798 exo 0.92 1.26 0.93 0.98 1.11 1.17 1.04 1.09 5'-3' exonuclease b2799 fucO 1.21 0.99 0.91 1.13 1.07 1.10 1.04 "L-1,2-propanediol oxidoreductase" b2800 fucA 1.02 1.21 0.96 0.95 0.91 1.03 1.06 0.96 L-fuculose-1-phosphate aldolase b2801 fucP 1.23 1.06 0.93 1.13 1.04 1.14 1.07 1.10 fucose permease b2802 fucI 1.23 1.31 1.04 0.92 1.05 1.02 1.19 1.00 L-fucose isomerase b2803 fucK 1.04 0.92 0.93 1.15 0.96 1.03 0.96 1.05 L-fuculokinase b2804 fucU 1.03 1.39 1.15 1.03 1.21 1.21 1.13 protein of fucose operon b2805 fucR 1.00 1.02 1.23 1.03 0.85 1.01 1.08 0.96 positive regulator of the fuc operon b2806 ygdE 0.84 1.13 1.14 0.89 0.87 1.12 1.04 0.96 "orf, hypothetical protein" b2807 ygdD 0.93 0.81 1.14 0.94 0.91 0.89 0.96 0.91 "orf, hypothetical protein" b2808 gcvA 1.31 1.47 0.99 1.03 1.11 1.39 1.04 positive regulator of gcv operon b2809 b2809 1.07 2.25 1.23 1.04 0.94 1.00 1.52 0.99 "orf, hypothetical protein" b2810 b2810 0.93 0.89 1.14 0.89 0.97 0.88 0.99 0.91 "orf, hypothetical protein" b2811 ygdK 1.09 1.15 0.89 0.97 0.98 1.12 0.95 "orf, hypothetical protein" b2812 ygdL 1.14 1.31 1.16 0.96 1.01 0.66 1.20 0.88 putative enzyme b2813 mltA 0.96 1.06 0.94 1.01 1.10 1.01 1.02 membrane-bound lytic murein transglycosylase A b2817 b2817 0.91 0.92 1.20 1.03 1.00 1.02 1.01 1.02 putative amidase b2818 argA 0.67 0.53 2.33 0.72 0.86 1.11 1.18 0.90 N-acetylglutamate synthase; amino acid acetyltransferase b2819 recD 0.85 1.04 1.15 1.09 0.98 1.14 1.01 1.07 "DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease" b2820 recB 1.02 1.06 0.91 1.17 1.10 1.06 1.00 1.11 "DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease" b2821 ptr 1.23 1.32 1.18 1.03 1.09 1.27 1.10 protease III b2822 recC 0.65 1.01 0.99 1.09 0.97 0.64 0.88 0.90 "DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease" b2823 ppdC 1.07 1.00 0.94 0.87 0.99 1.04 0.93 prepilin peptidase dependent protein C b2824 ygdB 0.93 1.06 0.93 0.99 0.93 0.94 0.97 0.95 "orf, hypothetical protein" b2825 ppdB 0.95 1.10 0.99 1.17 0.87 1.07 1.01 1.04 prepilin peptidase dependent protein B b2826 ppdA 0.95 1.00 0.99 1.14 0.91 1.02 0.98 1.02 prepilin peptidase dependent protein A b2827 thyA 1.06 0.75 0.86 1.03 0.91 0.91 0.93 thymidylate synthetase b2828 lgt 0.96 1.01 0.75 0.85 0.93 0.73 0.91 0.84 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid b2829 ptsP 0.96 0.77 1.02 1.15 1.09 0.87 1.09 "PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins)" b2830 ygdP 0.89 0.86 0.81 0.96 0.97 0.94 0.85 0.96 putative invasion protein b2831 mutH 1.02 1.41 1.16 0.97 1.00 1.01 1.20 0.99 methyl-directed mismatch repair b2832 b2832 1.00 1.16 0.98 1.05 0.82 0.95 1.05 0.94 putative transport protein b2833 b2833 0.98 1.52 1.12 0.89 1.09 1.25 1.03 "orf, hypothetical protein" b2834 b2834 0.92 1.30 0.81 1.29 1.31 1.22 1.01 1.27 "orf, hypothetical protein" b2835 ygeD 0.98 0.96 1.14 1.09 0.98 1.06 putative resistance proteins b2836 aas 1.17 1.31 1.39 0.95 1.00 0.98 1.29 0.98 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase b2837 galR 0.99 1.14 1.27 1.08 1.07 1.11 1.13 1.09 repressor of galETK operon b2838 lysA 1.12 1.16 1.11 0.90 0.99 1.06 1.13 0.98 diaminopimelate decarboxylase b2839 lysR 1.02 1.33 0.97 1.08 0.94 0.92 1.11 0.98 positive regulator for lys b2840 ygeA 0.99 0.89 1.04 1.08 1.05 1.01 0.97 1.05 putative resistance proteins b2841 araE 1.05 1.17 1.43 1.01 1.04 0.99 1.22 1.01 low-affinity L-arabinose transport system proton symport protein b2842 kduD 1.04 1.00 0.92 0.94 0.85 0.94 0.99 0.91 2-deoxy-D-gluconate 3-dehydrogenase b2843 kduI 1.08 1.34 1.19 1.01 1.01 1.04 1.20 1.02 homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase b2844 yqeF 0.77 0.86 0.75 0.86 0.89 0.82 0.83 putative acyltransferase b2845 b2845 1.01 1.66 1.35 1.01 1.01 1.06 1.34 1.03 putative transporter protein b2846 yqeH 0.91 1.89 1.12 0.99 0.87 1.07 1.31 0.98 "orf, hypothetical protein" b2847 yqeI 1.12 1.57 1.52 1.06 0.96 1.16 1.40 1.06 putative sensory transducer b2848 yqeJ 0.90 2.17 1.00 0.89 1.11 1.54 1.00 "orf, hypothetical protein" b2849 yqeK 0.86 0.94 1.02 0.83 0.96 0.90 0.94 "orf, hypothetical protein" b2850 ygeF 0.86 1.02 0.95 0.97 0.92 0.94 0.94 0.94 "orf, hypothetical protein" b2851 ygeG 0.92 1.07 0.83 1.03 0.92 0.98 "orf, hypothetical protein" b2852 ygeH 1.72 1.07 0.71 1.04 1.72 0.94 putative invasion protein b2853 b2853 0.89 0.81 1.09 1.28 0.88 1.06 0.93 1.07 "orf, hypothetical protein" b2854 b2854 1.01 1.05 0.95 0.94 1.00 1.03 0.96 "orf, hypothetical protein" b2855 ygeK 0.96 1.41 1.05 0.92 1.01 1.18 0.99 putative 2-component transcriptional regulator b2856 b2856 0.90 0.92 0.93 0.86 0.87 0.91 0.89 "orf, hypothetical protein" b2857 b2857 0.86 0.86 0.94 0.90 0.90 0.86 0.91 "orf, hypothetical protein" b2858 b2858 0.91 0.68 0.95 0.84 0.88 0.79 0.89 "orf, hypothetical protein" b2859 b2859 0.93 1.48 0.87 0.94 0.83 0.85 1.09 0.87 "orf, hypothetical protein" b2860 yi22_4 1.02 0.89 1.15 1.14 1.04 1.08 1.02 1.09 IS2 hypothetical protein b2861 yi21_4 1.01 1.21 1.02 1.14 1.00 1.04 1.08 1.06 IS2 hypothetical protein b2862 b2862 1.38 0.97 0.92 0.92 0.82 1.18 0.89 "orf, hypothetical protein" b2863 b2863 1.00 1.08 1.43 0.97 0.81 0.85 1.17 0.88 "orf, hypothetical protein" b2865 b2865 0.99 1.15 0.97 0.98 0.84 0.80 1.04 0.87 putative lipoprotein b2866 b2866 1.03 1.06 1.32 0.95 0.99 1.09 1.14 1.01 "orf, hypothetical protein" b2867 ygeT 0.96 1.11 0.83 1.02 0.91 1.04 0.97 0.99 putative dehydrogenase b2868 b2868 0.98 1.16 1.03 1.12 0.94 0.96 1.06 1.01 putative dehydrogenase b2869 ygeV 0.98 1.43 0.93 0.98 0.89 0.89 1.11 0.92 putative transcriptional regulator b2870 ygeW 1.08 1.06 1.54 1.07 0.92 1.15 1.23 1.05 putative carbamoyl transferase b2871 ygeX 1.01 0.94 1.25 1.08 0.82 1.05 1.07 0.98 putative dehydratase b2872 ygeY 1.13 1.31 1.08 1.06 0.96 1.11 1.17 1.04 putative deacetylase b2873 b2873 1.03 1.28 1.03 1.03 1.03 1.29 1.11 1.12 "orf, hypothetical protein" b2874 yqeA 1.18 1.22 0.99 0.97 1.21 1.20 1.06 putative kinase b2875 b2875 1.32 2.03 2.22 1.33 1.15 1.30 1.86 1.26 putative synthases b2876 b2876 1.13 1.55 1.59 1.13 1.02 1.12 1.42 1.09 "orf, hypothetical protein" b2877 ygfJ 0.90 1.59 1.06 1.01 1.02 1.25 1.18 1.09 "orf, hypothetical protein" b2878 b2878 0.94 0.88 0.93 1.13 0.94 0.98 "putative oxidoreductase, Fe-S subunit" b2879 b2879 1.05 1.27 1.39 1.10 0.69 1.23 1.24 1.01 putative proteoglycan b2880 b2880 1.42 1.36 1.02 1.25 1.35 1.21 1.27 1.27 "orf, hypothetical protein" b2881 b2881 0.98 1.07 1.22 0.98 0.85 1.00 1.09 0.94 putative dehydrogenase b2882 ygfO 1.09 1.52 1.32 1.11 1.07 1.03 1.31 1.07 putative transport protein b2883 ygfP 1.31 2.86 1.49 1.16 1.60 2.08 1.42 "orf, hypothetical protein" b2884 ygfQ 1.12 0.83 1.27 1.09 0.91 1.15 1.07 1.05 "orf, hypothetical protein" b2885 ygfR 1.75 1.45 1.05 0.91 1.24 1.60 1.07 putative oxidoreductase b2886 ygfS 0.96 1.04 0.88 1.04 0.90 0.99 0.96 0.98 "putative oxidoreductase, Fe-S subunit" b2887 ygfT 0.97 1.28 1.12 1.10 0.89 1.13 1.04 "putative oxidoreductase, Fe-S subunit" b2888 ygfU 0.90 1.40 1.32 0.97 0.96 1.05 1.21 0.99 putative permease b2889 b2889 1.16 1.85 2.04 1.09 1.02 1.05 1.68 1.05 putative enzyme b2890 lysS 0.64 0.73 0.73 0.73 0.64 0.73 "lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA" b2891 prfB 0.55 0.42 0.31 0.74 0.79 0.94 0.43 0.82 peptide chain release factor RF-2 b2892 recJ 0.88 0.96 0.89 1.02 1.01 1.03 0.91 1.02 "ssDNA exonuclease, 5' --> 3' specific" b2893 dsbC 1.02 0.80 0.76 0.92 0.92 0.89 0.86 0.91 protein disulfide isomerase II b2894 xerD 1.06 0.96 0.67 0.95 1.13 1.05 0.90 1.04 site-specific recombinase b2895 fldB 0.81 1.02 0.93 0.98 0.90 0.92 0.94 flavodoxin 2 b2896 b2896 0.90 0.77 1.04 1.12 0.92 1.05 0.90 1.03 "orf, hypothetical protein" b2897 ygfY 0.88 0.71 0.92 0.92 0.90 0.89 0.84 0.90 "orf, hypothetical protein" b2898 ygfZ 0.79 0.76 0.87 0.83 0.90 0.89 0.81 0.87 "orf, hypothetical protein" b2899 b2899 1.21 1.10 0.96 0.91 1.22 1.15 1.03 putative oxidoreductase b2900 yqfB 0.95 0.94 0.99 0.95 0.84 0.91 0.96 0.90 "orf, hypothetical protein" b2901 bglA 0.95 1.34 0.86 1.00 0.97 0.98 1.05 0.98 6-phospho-beta-glucosidase A; cryptic b2902 ygfF 1.10 1.09 0.93 1.12 1.09 1.18 1.04 1.13 putative oxidoreductase b2903 gcvP 0.69 0.50 0.81 0.84 0.85 0.60 0.83 "glycine decarboxylase, P protein of glycine cleavage system" b2904 gcvH 0.77 0.86 0.86 0.74 0.97 0.84 0.83 0.85 "in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor" b2905 gcvT 0.73 0.78 0.55 0.81 0.99 0.85 0.69 0.88 aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system b2906 visC 0.86 1.04 0.91 0.92 0.99 0.95 0.94 "orf, hypothetical protein" b2907 ubiH 0.98 1.09 0.79 1.08 0.90 1.07 0.95 1.02 "2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone" b2908 pepP 0.87 0.65 0.97 0.85 0.99 0.76 0.94 proline aminopeptidase P II b2909 ygfB 0.88 0.62 0.84 0.92 1.02 0.79 0.78 0.91 "orf, hypothetical protein" b2910 ygfE 1.33 1.92 0.96 1.11 1.72 1.63 1.26 "orf, hypothetical protein" b2912 ygfA 0.93 1.68 0.97 1.03 0.85 1.02 1.19 0.97 putative ligase b2913 serA 0.19 0.16 0.18 0.27 0.34 0.26 0.18 0.29 D-3-phosphoglycerate dehydrogenase b2914 rpiA 0.95 0.99 1.11 0.81 0.91 1.02 1.02 0.91 "ribosephosphate isomerase, constitutive" b2915 yqfE 1.00 1.61 0.99 0.99 0.92 0.92 1.20 0.94 "orf, hypothetical protein" b2916 iciA 1.00 0.99 0.83 0.95 0.97 1.06 0.94 0.99 "replication initiation inhibitor, binds to 13-mers at oriC" b2917 sbm 0.92 1.19 1.41 1.20 0.91 1.18 1.17 1.10 methylmalonyl-CoA mutase (MCM) b2918 ygfD 1.02 0.82 1.01 1.03 0.88 1.08 0.95 1.00 putative nucleotide-binding protein b2919 ygfG 0.90 1.08 1.10 0.98 0.90 0.90 1.03 0.93 putative enzyme b2920 ygfH 1.02 1.45 1.08 1.02 0.86 1.12 1.18 1.00 putative coenzyme A transferase b2921 ygfI 1.03 1.01 1.72 1.02 0.83 1.00 1.25 0.95 putative transcriptional regulator LYSR-type b2922 yggE 1.36 1.31 1.14 1.34 1.63 1.33 1.27 1.43 putative actin b2923 yggA 1.09 1.12 0.93 1.02 0.95 1.11 0.97 "orf, hypothetical protein" b2924 yggB 1.75 1.97 2.13 2.19 2.57 2.04 1.95 2.27 putative transport protein b2925 fba 0.75 0.70 0.50 0.90 1.27 1.01 0.65 1.06 "fructose-bisphosphate aldolase, class II" b2926 pgk 0.72 0.77 0.51 0.94 0.91 0.91 0.67 0.92 phosphoglycerate kinase b2927 epd 0.74 0.64 0.58 0.62 0.75 0.73 0.65 0.70 D-erythrose 4-phosphate dehydrogenase b2928 yggC 0.96 1.38 1.30 1.14 0.99 1.05 1.21 1.06 putative kinase b2929 yggD 1.39 1.34 1.16 1.09 1.19 1.09 1.30 1.12 putative transcriptional regulator b2930 yggF 0.87 1.24 1.00 1.06 0.89 1.16 1.04 1.04 "orf, hypothetical protein" b2931 b2931 0.97 1.18 0.93 0.92 0.97 0.93 1.03 0.94 putative oxidoreductase b2932 yggP 0.87 2.53 0.94 1.07 0.99 0.99 1.45 1.02 "orf, hypothetical protein" b2933 cmtA 1.14 0.99 1.05 1.02 1.14 1.07 1.07 "PTS system, mannitol-specific enzyme II component, cryptic" b2934 cmtB 0.97 0.82 1.09 1.01 0.92 0.89 1.01 "PTS system, mannitol-specific enzyme II component, cryptic" b2935 tktA 0.65 0.53 0.38 0.72 0.78 0.71 0.52 0.74 transketolase 1 isozyme b2936 yggG 0.92 1.18 1.49 1.02 1.02 1.30 1.20 1.11 "orf, hypothetical protein" b2937 speB 1.14 4.72 0.79 0.92 0.83 0.91 2.22 0.89 agmatinase b2938 speA 1.08 0.72 1.26 1.37 0.94 0.90 1.19 biosynthetic arginine decarboxylase b2939 yqgB 0.90 0.99 0.92 1.04 0.90 0.98 "orf, hypothetical protein" b2940 yqgC 0.97 0.88 1.11 0.98 1.20 0.92 1.10 "orf, hypothetical protein" b2941 yqgD 1.02 1.08 1.45 1.14 1.26 1.20 1.18 1.20 "orf, hypothetical protein" b2942 metK 1.29 1.64 1.03 1.41 1.32 1.46 1.25 "methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes" b2943 galP 0.99 0.97 1.08 0.80 1.06 1.02 1.01 0.96 galactose-proton symport of transport system b2944 sprT 0.97 1.09 1.08 1.03 0.90 1.11 1.05 1.01 "orf, hypothetical protein" b2945 endA 0.94 1.18 1.05 1.10 1.03 1.13 1.06 1.09 DNA-specific endonuclease I b2946 yggJ 0.91 0.99 0.91 0.92 0.88 0.87 0.94 0.89 "orf, hypothetical protein" b2947 gshB 0.90 0.87 0.85 0.93 1.01 0.90 0.87 0.95 glutathione synthetase b2948 yqgE 0.89 0.79 0.57 0.88 0.94 0.90 0.75 0.91 "orf, hypothetical protein" b2949 yqgF 0.90 0.68 0.93 0.97 1.03 1.02 0.84 1.01 "orf, hypothetical protein" b2950 yggR 1.23 1.11 1.22 1.05 1.26 1.17 1.18 putative protein transport b2951 yggS 1.06 0.87 0.89 0.88 0.86 0.96 0.88 "orf, hypothetical protein" b2952 yggT 0.91 0.86 1.03 0.94 0.98 0.97 0.93 0.96 putative resistance protein b2953 yggU 0.94 0.65 0.85 0.88 1.00 0.81 0.81 0.90 "orf, hypothetical protein" b2954 yggV 0.87 0.96 0.81 0.94 0.84 0.96 0.88 0.91 putative ribosomal protein b2955 yggW 0.88 0.70 0.90 0.82 0.82 0.79 0.85 putative oxidase b2956 yggM 0.99 1.34 1.04 0.91 0.98 1.02 1.12 0.97 putative alpha helix chain b2957 ansB 0.99 1.47 1.04 1.01 0.89 0.98 1.17 0.96 periplasmic L-asparaginase II b2958 yggN 1.03 1.02 1.15 0.95 0.91 1.07 1.07 0.98 "orf, hypothetical protein" b2959 yggL 1.09 0.93 1.28 0.95 0.85 1.11 1.10 0.97 "orf, hypothetical protein" b2960 yggH 0.90 1.01 0.98 1.00 0.93 0.96 0.97 "orf, hypothetical protein" b2961 mutY 1.00 0.96 0.71 0.93 0.96 0.96 0.89 0.95 adenine glycosylase; G.C --> T.A transversions b2962 yggX 0.87 0.72 0.83 0.93 1.10 0.91 0.81 0.98 "orf, hypothetical protein" b2963 mltC 0.67 0.68 0.85 1.03 0.91 0.68 0.93 membrane-bound lytic murein transglycosylase C b2964 nupG 1.14 1.35 1.43 0.91 1.04 0.93 1.31 0.96 "transport of nucleosides, permease protein" b2965 speC 1.03 1.07 0.87 1.18 0.98 1.09 0.99 1.08 ornithine decarboxylase isozyme b2966 yqgA 1.04 1.30 0.95 0.98 1.05 1.17 0.99 putative transport protein b2968 yghD 1.34 1.11 0.91 1.10 1.05 1.23 1.02 putative secretion pathway protein b2969 yghE 0.91 0.96 1.33 1.07 1.02 1.00 1.07 1.03 putative general secretion pathway for protein export (GSP) b2970 b2970 1.36 1.00 0.97 1.11 0.99 1.18 1.02 putative general secretion pathway for protein export (GSP) b2971 b2971 0.96 1.37 0.49 0.88 0.86 1.01 0.94 0.92 "orf, hypothetical protein" b2972 b2972 0.96 1.15 0.94 0.82 0.80 0.90 1.02 0.84 putative peptidase b2973 b2973 1.16 0.74 0.57 0.72 0.99 0.84 0.82 0.85 "orf, hypothetical protein" b2974 b2974 1.02 1.01 0.79 0.96 0.62 0.86 0.94 0.81 putative endoglucanase b2975 yghK 1.12 1.18 1.41 1.00 1.00 1.17 1.24 1.06 putative permease b2976 glcB 0.70 0.75 1.05 1.12 1.02 1.11 0.83 1.08 malate synthase G b2977 glcG 0.75 0.61 0.95 1.06 1.03 0.93 0.77 1.01 "orf, hypothetical protein" b2978 glcF 0.95 1.00 1.08 1.00 0.98 1.24 1.01 1.07 glycolate oxidase iron-sulfur subunit b2979 glcD 0.81 0.95 1.02 1.06 1.06 1.18 0.93 1.10 glycolate oxidase subunit D b2980 glcC 1.02 0.97 0.83 1.00 1.02 1.08 0.94 1.03 transcriptional activator for glc operon b2981 b2981 1.24 0.98 1.09 0.90 1.10 1.11 1.03 "orf, hypothetical protein" b2982 trs5_9 0.78 0.67 0.81 1.16 0.91 1.02 0.75 1.03 IS5 transposase b2983 yghQ 1.07 1.13 1.09 0.97 1.00 1.12 1.10 1.03 "orf, hypothetical protein" b2984 yghR 0.98 1.19 0.90 1.05 0.90 1.16 1.02 1.04 "orf, hypothetical protein" b2985 yghS 1.01 1.29 0.85 0.98 0.93 0.96 1.05 0.96 "orf, hypothetical protein" b2986 yghT 0.93 1.67 0.83 0.93 0.80 0.86 1.14 0.86 "orf, hypothetical protein" b2987 pitB 0.93 0.89 0.82 1.06 0.98 0.91 0.95 low-affinity phosphate transport b2988 gsp 1.11 1.30 0.93 1.26 1.15 1.16 1.11 1.19 glutathionylspermidine synthetase/amidase b2989 b2989 1.19 1.13 1.56 1.09 1.06 1.00 1.29 1.05 "orf, hypothetical protein" b2990 hybG 1.15 1.03 1.04 1.01 1.15 1.03 hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2 b2991 hybF 1.02 0.91 1.22 1.05 0.65 1.01 1.05 0.90 may modulate levels of hydrogenease-2 b2992 hybE 1.39 1.04 1.03 0.99 1.01 1.22 1.01 member of hyb operon b2993 hybD 0.92 1.18 1.19 1.09 0.79 0.94 1.10 0.94 probable processing element for hydrogenase-2 b2994 hybC 0.95 1.04 0.95 0.94 0.96 1.03 0.98 0.98 "probable large subunit, hydrogenase-2" b2995 hybB 1.01 1.07 0.95 1.18 0.84 1.08 1.01 1.03 probable cytochrome Ni/Fe component of hydrogenase-2 b2996 hybA 1.21 0.94 0.92 0.78 0.95 1.08 0.88 hydrogenase-2 small subunit b2997 b2997 1.19 1.09 1.16 1.01 0.96 1.01 1.15 0.99 putative hydrogenase subunit b2998 b2998 1.72 1.28 0.95 1.14 0.91 1.50 1.00 "orf, hypothetical protein" b2999 b2999 1.10 1.13 2.22 1.15 0.88 0.78 1.48 0.94 "orf, hypothetical protein" b3000 b3000 1.36 1.57 4.00 1.07 0.94 1.03 2.31 1.01 "orf, hypothetical protein" b3001 b3001 1.00 0.85 0.83 0.81 1.15 0.93 0.93 putative reductase b3002 yqhA 0.96 0.99 1.64 0.77 0.82 1.02 1.20 0.87 "orf, hypothetical protein" b3003 yghA 1.35 1.30 1.35 1.26 1.27 1.32 1.29 putative oxidoreductase b3004 b3004 0.86 1.08 0.84 0.89 0.91 0.97 0.88 "orf, hypothetical protein" b3005 exbD 0.97 1.05 0.81 0.62 0.77 0.81 0.94 0.73 uptake of enterochelin; tonB-dependent uptake of B colicins b3006 exbB 1.05 0.79 0.56 0.60 0.84 0.80 0.80 0.75 uptake of enterochelin; tonB-dependent uptake of B colicins b3007 b3007 0.90 0.81 0.88 0.86 0.81 0.97 0.86 0.88 "orf, hypothetical protein" b3008 metC 0.90 1.33 0.82 1.15 0.98 1.12 0.98 cystathionine beta-lyase (beta-cystathionase) b3009 yghB 0.84 0.95 0.98 0.94 1.25 0.90 1.06 "orf, hypothetical protein" b3010 yqhC 1.19 0.82 0.97 1.03 1.07 1.00 1.02 putative ARAC-type regulatory protein b3011 yqhD 0.86 1.06 0.57 0.94 0.90 0.98 0.83 0.94 putative oxidoreductase b3012 yqhE 1.11 1.36 1.25 1.57 1.38 1.23 1.24 1.39 "orf, hypothetical protein" b3013 yqhG 0.99 1.31 1.39 1.15 0.89 1.07 1.23 1.04 "orf, hypothetical protein" b3014 yqhH 0.92 0.98 0.83 1.14 0.96 1.05 0.91 1.05 "orf, hypothetical protein" b3015 b3015 0.86 0.95 0.82 0.87 0.86 0.88 "orf, hypothetical protein" b3016 ygiR 1.06 0.83 1.10 0.97 1.03 1.01 1.00 1.00 "orf, hypothetical protein" b3017 sufI 0.94 0.90 1.09 0.91 0.89 0.91 0.98 0.90 suppressor of ftsI b3018 plsC 0.92 0.91 1.00 1.10 0.96 1.02 0.94 1.03 1-acyl-sn-glycerol-3-phosphate acyltransferase b3019 parC 0.70 0.81 0.77 0.84 1.10 1.01 0.76 0.98 DNA topoisomerase IV subunit A b3020 b3020 0.87 1.27 1.03 1.04 0.86 1.14 1.06 1.01 putative transport periplasmic protein b3021 b3021 0.95 1.43 1.19 1.16 0.94 1.14 1.19 1.08 "orf, hypothetical protein" b3022 b3022 0.89 0.81 0.72 0.93 0.90 0.93 0.81 0.92 "orf, hypothetical protein" b3023 b3023 0.99 1.45 1.22 0.91 0.77 0.89 1.22 0.86 "orf, hypothetical protein" b3024 ygiW 1.10 1.66 1.56 1.22 1.05 1.09 1.44 1.12 "orf, hypothetical protein" b3025 ygiX 1.02 1.05 1.22 1.07 0.91 1.07 1.10 1.02 putative 2-component transcriptional regulator b3026 ygiY 1.17 1.60 0.93 0.91 1.05 0.96 1.23 0.97 putative 2-component sensor protein b3027 b3027 0.96 1.38 1.06 1.02 0.86 0.93 1.13 0.94 "orf, hypothetical protein" b3028 mdaB 0.88 0.93 0.95 0.98 0.90 0.97 0.92 0.95 modulator of drug activity B b3029 ygiN 1.06 1.53 1.79 0.96 0.91 0.31 1.46 0.73 "orf, hypothetical protein" b3030 parE 0.98 0.88 0.74 0.84 0.84 1.03 0.87 0.90 DNA topoisomerase IV subunit B b3031 yqiA 0.89 0.73 0.90 0.88 0.93 0.81 0.90 "orf, hypothetical protein" b3032 icc 0.80 0.77 0.64 0.98 0.99 0.93 0.74 0.97 regulator of lacZ b3033 yqiB 0.84 1.08 1.08 1.03 1.13 0.96 1.08 putative enzyme b3034 yqiE 1.33 1.18 1.32 1.24 1.54 1.14 1.28 1.31 "orf, hypothetical protein" b3035 tolC 0.92 0.84 0.62 0.93 0.99 0.84 0.79 0.92 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes b3036 ygiA 0.91 0.82 1.05 1.04 1.05 0.87 1.05 "orf, hypothetical protein" b3037 ygiB 0.83 0.72 1.14 0.99 1.21 0.82 0.90 1.01 "orf, hypothetical protein" b3038 ygiC 0.82 0.62 0.98 0.94 0.79 0.85 0.81 0.86 putative synthetase/amidase b3039 ygiD 0.93 1.18 1.28 0.99 1.02 1.12 1.13 1.04 "orf, hypothetical protein" b3040 ygiE 0.96 1.14 1.41 1.12 1.00 1.11 1.17 1.08 "orf, hypothetical protein" b3041 ribB 1.02 0.80 1.39 0.93 0.92 1.02 1.07 0.96 "3,4 dihydroxy-2-butanone-4-phosphate synthase" b3042 b3042 1.03 1.48 1.45 0.94 0.96 1.25 1.32 1.05 "orf, hypothetical protein" b3043 ygiL 0.85 1.78 1.32 1.07 0.94 0.80 1.32 0.94 putative fimbrial-like protein b3044 yi21_5 0.93 1.07 0.99 1.03 0.93 1.08 1.00 1.01 IS2 hypothetical protein b3045 yi22_5 0.92 0.89 0.99 0.84 1.16 0.87 0.93 0.96 IS2 hypothetical protein b3046 yqiG 1.01 1.29 1.59 0.96 0.93 0.98 1.30 0.96 putative membrane protein b3047 yqiH 1.19 1.11 1.00 0.96 0.89 1.15 0.95 putative membrane protein b3048 yqiI 1.08 1.37 0.94 1.09 0.96 1.04 1.13 1.03 "orf, hypothetical protein" b3049 glgS 1.52 0.72 0.83 1.21 1.16 1.38 1.02 1.25 "glycogen biosynthesis, rpoS dependent" b3050 b3050 0.92 1.30 1.16 1.44 1.18 1.10 1.13 1.24 putative oxidoreductase b3051 b3051 1.08 0.99 1.01 0.97 1.10 1.04 1.03 putative membrane protein b3052 b3052 0.98 1.08 1.06 0.98 0.92 1.03 0.99 putative kinase b3053 glnE 1.00 0.67 1.14 0.89 1.02 0.84 1.02 adenylylating enzyme for glutamine synthetase b3054 ygiF 1.01 0.78 1.17 1.04 1.22 0.90 1.14 "orf, hypothetical protein" b3055 ygiM 1.08 0.99 0.66 1.15 1.13 1.17 0.91 1.15 "orf, hypothetical protein" b3056 cca 1.15 1.24 0.84 1.03 1.03 1.23 1.08 1.10 tRNA nucleotidyl transferase b3057 bacA 1.61 0.93 1.01 1.14 1.61 1.03 bacitracin resistance; possibly phosphorylates undecaprenol b3058 ygiG 0.87 1.02 0.92 1.15 0.92 1.07 0.94 1.05 putative kinase b3059 ygiH 1.11 1.01 0.97 0.98 1.09 1.06 1.01 "orf, hypothetical protein" b3060 ygiP 0.97 0.99 1.10 1.11 0.83 0.84 1.02 0.93 putative transcriptional regulator LYSR-type b3061 ttdA 1.22 0.62 1.00 0.94 0.90 0.92 0.95 "L-tartrate dehydratase, subunit A" b3062 ttdB 1.09 2.86 0.95 0.84 0.97 1.97 0.92 "L-tartrate dehydratase, subunit B" b3063 ygjE 1.04 1.18 1.11 1.04 1.00 1.11 1.11 1.05 "orf, hypothetical protein" b3064 ygjD 0.92 0.97 0.99 0.94 0.99 1.07 0.96 1.00 putative O-sialoglycoprotein endopeptidase b3065 rpsU 0.99 0.71 1.25 0.53 1.06 1.04 0.98 0.88 30S ribosomal subunit protein S21 b3066 dnaG 0.81 0.67 0.89 0.85 0.86 0.85 0.79 0.85 DNA biosynthesis; DNA primase b3067 rpoD 0.84 0.92 0.83 0.98 1.04 0.93 0.86 0.98 "RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures" b3068 ygjF 0.99 1.03 1.07 0.90 1.21 1.01 1.06 "orf, hypothetical protein" b3070 yqjH 0.79 0.88 0.39 0.94 0.92 1.04 0.69 0.97 "orf, hypothetical protein" b3071 yqjI 0.99 0.86 0.90 0.85 0.89 0.94 0.92 0.89 "orf, hypothetical protein" b3072 aer 1.08 1.11 1.04 1.03 0.98 1.04 1.08 1.02 "aerotaxis sensor receptor, flavoprotein" b3073 ygjG 4.02 5.18 5.56 6.42 1.86 2.00 4.92 3.43 probable ornithine aminotransferase b3074 ygjH 1.51 1.12 1.37 1.29 1.18 1.12 1.33 1.20 putative tRNA synthetase b3075 ebgR 1.10 1.03 0.94 0.91 0.92 1.04 1.02 0.96 regulator of ebg operon b3076 ebgA 1.15 0.95 0.93 1.08 1.00 0.94 1.01 1.01 "evolved beta-D-galactosidase, alpha subunit; cryptic gene" b3077 ebgC 0.98 0.77 1.00 1.01 0.98 0.87 1.00 "evolved beta-D-galactosidase, beta subunit; cryptic gene" b3078 ygjI 0.85 0.86 0.98 0.86 1.00 0.86 0.95 putative oxidoreductase b3079 ygjJ 0.92 1.05 0.87 0.95 0.87 1.00 0.95 0.94 "orf, hypothetical protein" b3080 ygjK 1.04 1.01 0.94 0.81 0.96 1.03 0.90 putative isomerase b3081 ygjL 1.01 1.26 1.18 1.05 0.89 1.24 1.15 1.06 putative NADPH dehydrogenase b3082 ygjM 1.01 1.10 0.86 0.94 0.92 1.01 0.99 0.96 "orf, hypothetical protein" b3083 ygjN 1.09 1.04 1.22 0.93 0.96 1.05 1.12 0.98 "orf, hypothetical protein" b3084 ygjO 1.01 1.10 0.99 0.85 0.96 0.94 1.03 0.92 putative enzyme b3085 ygjP 1.00 1.18 1.15 0.99 1.04 1.01 1.11 1.01 "orf, hypothetical protein" b3086 ygjQ 0.95 1.17 1.05 1.01 0.88 1.09 1.06 0.99 "orf, hypothetical protein" b3087 ygjR 1.02 1.22 1.15 1.03 0.97 1.12 1.13 1.04 "orf, hypothetical protein" b3088 ygjT 0.92 0.85 0.87 1.00 0.96 1.08 0.88 1.01 putative transport protein b3089 ygjU 0.69 0.82 0.70 0.63 0.84 0.81 0.74 0.76 putative transport protein b3090 ygjV 0.96 1.24 0.98 0.99 1.10 1.08 1.06 1.06 "orf, hypothetical protein" b3091 uxaA 0.97 1.11 0.56 0.89 1.01 0.92 0.88 0.94 altronate hydrolase b3092 uxaC 1.04 0.94 0.33 0.82 1.09 1.03 0.77 0.98 uronate isomerase b3093 exuT 1.02 0.99 1.45 1.01 1.00 1.00 1.15 1.00 transport of hexuronates b3094 exuR 0.92 0.85 1.04 1.05 0.98 1.01 0.94 1.01 "negative regulator of exu regulon, exuT, uxaAC, and uxuB" b3095 yqjA 0.99 0.92 1.67 1.03 1.08 1.20 1.19 1.10 "orf, hypothetical protein" b3096 yqjB 1.08 1.02 1.05 1.00 1.14 1.05 1.06 "orf, hypothetical protein" b3097 yqjC 1.17 1.52 1.22 1.75 1.21 1.23 1.30 1.40 "orf, hypothetical protein" b3098 yqjD 1.73 1.23 1.62 1.16 2.02 1.48 1.60 "orf, hypothetical protein" b3099 yqjE 1.17 1.53 1.16 1.66 1.06 1.40 1.29 1.37 "orf, hypothetical protein" b3100 b3100 1.06 1.33 0.99 1.18 0.93 0.98 1.13 1.03 "orf, hypothetical protein" b3101 yqjF 0.98 1.09 0.79 0.94 1.00 1.13 0.95 1.02 "orf, hypothetical protein" b3102 yqjG 1.29 1.48 1.54 1.29 1.25 1.18 1.44 1.24 putative transferase b3103 yhaH 1.19 1.49 1.01 0.90 1.07 1.34 0.99 putative cytochrome b3104 yhaI 1.38 1.01 1.05 0.81 0.85 1.20 0.90 putative cytochrome b3105 yhaJ 1.00 1.21 1.18 0.90 1.05 1.09 1.13 1.01 putative transcriptional regulator LYSR-type b3106 yhaK 1.01 0.55 0.56 0.86 0.96 0.78 0.79 "orf, hypothetical protein" b3107 yhaL 0.93 0.92 0.71 0.89 0.97 0.93 0.86 "orf, hypothetical protein" b3108 yhaM 1.10 1.12 1.05 0.92 0.89 0.99 1.09 0.93 "orf, hypothetical protein" b3109 yhaN 0.97 1.21 1.02 0.98 0.85 1.02 1.07 0.95 "orf, hypothetical protein" b3110 yhaO 1.04 1.14 1.03 1.03 0.80 1.02 1.07 0.95 putative transport system permease protein b3111 yhaP 1.07 1.05 1.08 1.01 1.05 1.10 1.07 1.05 putative L-serine dehydratase b3112 yhaQ 0.95 1.05 0.94 0.97 0.88 0.97 0.98 0.94 putative L-serine dehydratase b3113 yhaR 0.97 1.53 0.92 0.99 0.98 1.07 1.14 1.01 "orf, hypothetical protein" b3114 tdcE 0.96 1.24 0.73 1.11 1.11 1.06 0.98 1.09 probable formate acetyltransferase 3 b3115 tdcD 1.41 0.66 1.01 0.56 1.41 0.74 putative kinase b3116 tdcC 1.02 1.23 0.95 0.91 1.06 1.11 1.07 1.03 "anaerobically inducible L-threonine, L-serine permease" b3117 tdcB 0.98 0.71 1.00 0.99 0.94 0.85 0.98 "threonine dehydratase, catabolic" b3118 tdcA 0.91 0.94 0.82 0.91 0.99 0.93 0.91 transcriptional activator of tdc operon b3119 tdcR 0.92 1.33 0.75 1.13 0.93 0.78 1.00 0.95 threonine dehydratase operon activator protein b3120 yhaB 1.10 1.46 1.12 0.96 1.06 1.06 1.23 1.03 "orf, hypothetical protein" b3121 yhaC 0.90 1.60 0.96 1.03 0.89 0.96 1.15 0.96 "orf, hypothetical protein" b3122 b3122 1.11 1.05 1.03 0.93 0.99 1.08 0.98 "orf, hypothetical protein" b3124 yhaD 1.10 1.46 0.93 1.11 1.09 0.98 1.16 1.06 "orf, hypothetical protein" b3125 yhaE 1.01 1.44 1.05 1.08 0.89 0.94 1.17 0.97 putative dehydrogenase b3126 yhaF 1.18 1.53 0.90 1.03 1.06 1.09 1.20 1.06 "orf, hypothetical protein" b3127 yhaU 1.08 0.91 1.04 0.98 0.94 1.14 1.01 1.02 putative transport protein b3128 yhaG 1.02 0.94 0.92 0.85 1.07 0.98 0.95 putative hydrolase b3129 sohA 1.12 1.75 1.85 1.05 1.09 1.07 1.57 1.07 putative protease; htrA suppressor protein b3130 yhaV 0.99 0.97 2.00 0.99 0.97 1.00 1.32 0.99 "orf, hypothetical protein" b3131 agaR 1.08 0.92 1.39 0.99 1.01 1.07 1.13 1.02 putative DEOR-type transcriptional regulator of aga operon b3132 agaZ 0.90 1.05 0.82 0.98 0.93 1.11 0.92 1.01 putative tagatose 6-phosphate kinase 2 b3133 agaV 0.88 1.18 0.93 1.21 0.93 0.96 1.00 1.03 "PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA)" b3134 agaW 1.39 1.46 0.83 1.04 0.83 1.03 1.23 0.97 PTS system N-acetylgalactosameine-specific IIC component 2 b3135 agaA 0.97 0.89 0.97 0.97 0.97 0.94 0.94 0.96 putative N-acetylgalactosamine-6-phosphate deacetylase b3136 agaS 1.16 0.93 1.06 0.97 1.21 1.05 1.08 putative tagatose-6-phosphate aldose/ketose isomerase b3137 agaY 0.96 1.36 0.77 0.86 0.84 0.94 1.03 0.88 tagatose-bisphosphate aldolase 2 b3138 agaB 1.03 1.44 0.88 0.90 0.89 0.95 1.12 0.91 "PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA)" b3139 agaC 1.01 1.05 0.84 0.92 1.01 0.94 PTS system N-acetylgalactosamine-specific IIC component 1 b3140 agaD 1.16 1.05 1.27 0.89 0.83 0.93 1.16 0.88 "PTS system, N-acetylglucosamine enzyme IID component 1" b3141 agaI 1.06 1.07 0.97 0.98 0.93 0.94 1.03 0.95 putative galactosamine-6-phosphate isomerase b3142 yraH 1.14 1.04 1.09 0.96 1.06 1.09 1.04 putative fimbrial-like protein b3143 yraI 1.51 1.04 1.06 0.88 1.02 1.28 0.99 putative chaperone b3144 yraJ 1.16 0.92 1.03 1.04 1.02 1.04 1.03 putative outer membrane protein b3145 yraK 1.04 0.99 1.10 1.12 0.83 0.91 1.04 0.95 putative fimbrial protein b3146 yraL 0.94 0.94 0.88 0.77 1.10 0.91 0.92 0.93 "orf, hypothetical protein" b3147 yraM 0.76 0.67 1.00 0.75 0.85 0.82 0.81 0.81 putative glycosylase b3148 yraN 0.87 0.76 0.84 0.96 0.90 0.93 0.82 0.93 "orf, hypothetical protein" b3149 yraO 1.03 0.83 0.90 0.85 0.96 0.92 0.92 0.91 "orf, hypothetical protein" b3150 yraP 1.01 0.89 0.76 0.91 1.10 1.03 0.89 1.01 putative periplasmic protein b3151 yraQ 0.91 1.10 0.96 0.97 0.92 1.00 0.99 0.96 "orf, hypothetical protein" b3152 yraR 1.11 1.01 1.25 1.02 0.80 1.05 1.12 0.96 "orf, hypothetical protein" b3153 yhbO 1.03 1.50 1.37 1.25 1.12 1.32 1.30 1.23 "orf, hypothetical protein" b3154 yhbP 0.96 0.98 1.06 0.96 0.85 1.01 1.00 0.94 "orf, hypothetical protein" b3155 yhbQ 0.97 1.50 1.27 0.95 0.89 0.93 1.25 0.92 "orf, hypothetical protein" b3156 yhbS 0.97 1.01 1.28 0.99 0.97 1.11 1.09 1.02 "orf, hypothetical protein" b3157 yhbT 1.05 0.91 1.12 1.01 0.97 1.18 1.03 1.05 "orf, hypothetical protein" b3158 yhbU 0.90 1.19 1.06 1.02 1.15 1.05 1.08 putative collagenase b3159 yhbV 0.90 1.08 1.02 1.05 0.93 1.10 1.00 1.03 "orf, hypothetical protein" b3160 yhbW 1.01 1.21 0.83 1.19 1.19 1.18 1.02 1.19 putative enzyme b3161 mtr 0.99 0.96 1.01 1.03 0.99 1.00 0.99 1.01 tryptophan-specific transport protein b3162 deaD 0.68 0.62 0.63 0.75 1.50 0.72 0.64 0.99 inducible ATP-independent RNA helicase b3163 yhbM 0.93 0.57 0.78 0.81 1.17 1.16 0.76 1.05 putative control proteins b3164 pnp 0.63 0.60 0.79 0.92 0.66 0.62 0.79 polynucleotide phosphorylase; cytidylate kinase activity b3165 rpsO 0.63 1.19 0.66 0.70 1.05 0.91 0.80 30S ribosomal subunit protein S15 b3166 truB 0.86 0.73 0.79 0.96 0.80 0.79 0.85 tRNA pseudouridine 5S synthase b3167 rbfA 0.70 0.63 0.60 0.83 0.91 0.80 0.64 0.85 ribosome-binding factor A b3168 infB 0.70 0.70 0.73 0.85 0.66 0.70 0.75 protein chain initiation factor IF-2 b3169 nusA 0.77 0.72 0.60 0.77 0.79 0.60 0.70 0.72 transcription pausing; L factor b3170 yhbC 0.73 0.58 0.54 0.84 0.77 0.69 0.62 0.77 "orf, hypothetical protein" b3172 argG 0.47 0.36 1.20 0.53 0.70 0.66 0.68 0.63 argininosuccinate synthetase b3173 yhbX 1.16 1.15 1.25 0.95 0.97 0.98 1.19 0.97 putative alkaline phosphatase I b3175 secG 0.61 1.37 0.73 0.78 1.18 0.99 0.90 protein export - membrane protein b3176 mrsA 0.72 0.75 0.68 0.74 0.92 0.72 0.72 0.79 similar to phosphoglucomutases and phosphomannomutases b3177 folP 0.90 1.01 0.69 0.91 0.82 0.89 0.87 0.87 "7,8-dihydropteroate synthase" b3178 hflB 0.79 0.69 1.10 0.77 0.90 0.92 0.86 0.86 "degrades sigma32, integral membrane peptidase, cell division protein" b3179 ftsJ 1.08 0.98 1.45 0.95 1.05 1.12 1.17 1.04 cell division protein b3180 yhbY 1.04 0.91 1.54 0.88 0.98 1.10 1.16 0.99 "orf, hypothetical protein" b3181 greA 1.02 0.93 1.35 0.61 0.74 0.94 1.10 0.76 transcription elongation factor: cleaves 3' nucleotide of paused mRNA b3182 dacB 0.85 1.13 1.17 0.97 1.06 0.99 1.07 "D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4" b3183 yhbZ 0.84 0.97 1.25 0.88 0.92 1.02 1.02 0.94 putative GTP-binding factor b3184 yhbE 0.98 0.86 0.91 0.98 1.03 0.98 0.92 1.00 "orf, hypothetical protein" b3185 rpmA 0.82 1.49 0.45 0.86 1.14 1.16 0.82 50S ribosomal subunit protein L27 b3186 rplU 0.92 0.92 1.32 0.52 0.54 1.09 1.05 0.72 50S ribosomal subunit protein L21 b3187 ispB 1.05 0.87 0.87 0.99 1.09 0.99 0.93 1.02 octaprenyl diphosphate synthase b3188 nlp 0.89 1.17 1.43 1.10 0.96 0.96 1.16 1.01 regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu b3189 murA 0.97 0.81 0.74 0.71 1.04 0.89 0.84 0.88 first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase b3190 yrbA 1.09 1.02 0.68 0.95 1.01 0.93 0.93 0.96 "orf, hypothetical protein" b3191 yrbB 0.93 1.02 1.11 1.04 1.00 1.07 1.02 1.04 "orf, hypothetical protein" b3192 yrbC 0.83 1.19 1.05 1.13 1.57 1.27 1.02 1.32 "orf, hypothetical protein" b3193 yrbD 0.92 0.86 0.88 0.91 0.88 0.88 0.89 0.89 "orf, hypothetical protein" b3194 yrbE 0.99 0.79 1.49 0.74 0.92 0.83 1.09 0.83 "orf, hypothetical protein" b3195 yrbF 1.04 0.95 0.92 0.78 0.91 1.00 0.97 0.90 putative ATP-binding component of a transport system b3196 yrbG 0.92 0.77 1.05 0.95 1.03 0.94 0.91 0.97 "orf, hypothetical protein" b3197 yrbH 0.97 0.82 1.02 1.02 1.06 0.89 1.03 putative isomerase b3198 yrbI 1.02 1.07 0.96 0.96 1.00 0.95 1.02 0.97 "orf, hypothetical protein" b3199 yrbK 0.94 0.58 0.93 0.96 1.05 0.92 0.82 0.98 "orf, hypothetical protein" b3200 yhbN 0.97 0.70 1.00 0.98 0.97 0.94 0.89 0.96 "orf, hypothetical protein" b3201 yhbG 1.00 0.91 0.96 0.97 0.98 0.91 0.96 0.95 putative ATP-binding component of a transport system b3202 rpoN 1.17 0.96 0.87 1.27 1.68 1.35 1.00 1.43 "RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation" b3203 yhbH 1.17 0.98 0.97 1.73 1.40 1.88 1.04 1.67 probable sigma-54 modulation protein b3204 ptsN 0.99 0.91 0.70 1.04 0.98 0.94 0.87 0.99 "phosphotransferase system enzyme IIA, regulates N metabolism" b3205 yhbJ 0.92 0.84 0.69 1.04 1.31 0.95 0.82 1.10 "orf, hypothetical protein" b3206 ptsO 1.02 1.00 1.09 1.06 1.09 0.98 1.04 1.04 "phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr" b3207 yrbL 1.09 1.02 1.79 1.47 2.01 1.86 1.30 1.78 "orf, hypothetical protein" b3208 mtgA 1.02 0.86 0.93 1.28 1.27 1.12 0.94 1.22 putative peptidoglycan enzyme b3209 yhbL 0.90 0.99 0.71 0.95 0.97 1.02 0.87 0.98 sigma cross-reacting protein 27A (SCRP-27A) b3210 arcB 1.05 1.11 1.24 1.08 1.05 1.14 "aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA" b3211 yhcC 1.00 1.52 0.84 1.12 0.99 1.19 1.12 1.10 "orf, hypothetical protein" b3212 gltB 0.91 0.61 0.60 0.34 0.91 0.52 "glutamate synthase, large subunit" b3213 gltD 0.91 0.28 0.47 0.68 0.58 0.66 0.55 0.64 "glutamate synthase, small subunit" b3214 gltF 0.93 0.87 0.76 1.03 0.97 0.98 0.85 0.99 "regulator of gltBDF operon, induction of Ntr enzymes" b3215 yhcA 1.09 0.96 1.00 0.94 0.96 1.03 0.97 putative chaperone b3216 yhcD 1.43 1.02 0.99 1.09 1.43 1.03 putative outer membrane protein b3217 yhcE 1.10 1.18 1.32 1.11 1.00 1.02 1.20 1.04 "orf, hypothetical protein" b3218 trs5_10 0.78 0.75 0.82 1.09 1.04 0.78 1.07 IS5 transposase b3219 yhcF 1.14 1.25 1.45 0.90 1.01 1.04 1.28 0.98 putative transcriptional regulator b3220 yhcG 1.02 1.33 1.23 0.88 1.01 0.95 1.19 0.95 "orf, hypothetical protein" b3221 yhcH 1.26 1.37 1.43 0.91 0.91 0.99 1.35 0.94 "orf, hypothetical protein" b3222 yhcI 1.02 1.52 1.15 0.99 1.03 1.27 1.06 putative NAGC-like transcriptional regulator b3223 yhcJ 1.02 1.16 1.03 0.97 1.06 1.09 1.02 putative enzyme b3224 nanT 1.20 1.21 1.47 1.16 1.26 1.22 1.29 1.21 sialic acid transporter b3225 nanA 1.15 1.30 1.54 1.21 1.11 1.18 1.33 1.17 N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K-12? b3226 yhcK 0.98 1.02 1.06 0.99 1.06 1.10 1.02 1.05 putative FADA-type transcriptional regulator b3227 yhcL 1.17 1.56 1.03 1.10 1.05 1.37 1.06 putative transport protein b3228 sspB 0.93 0.57 0.82 0.84 0.92 1.04 0.77 0.93 stringent starvation protein B b3229 sspA 0.73 0.74 0.79 0.94 1.15 0.94 0.75 1.01 regulator of transcription; stringent starvation protein A b3230 rpsI 0.53 0.53 0.98 0.54 0.57 0.86 0.68 0.66 30S ribosomal subunit protein S9 b3231 rplM 0.54 0.44 0.99 0.63 0.58 0.70 0.66 0.64 50S ribosomal subunit protein L13 b3232 yhcM 0.85 0.90 0.62 0.77 1.03 0.92 0.79 0.91 "orf, hypothetical protein" b3233 yhcB 1.05 1.09 0.99 0.74 0.94 1.13 1.04 0.94 "orf, hypothetical protein" b3234 degQ 1.08 1.05 1.06 1.02 0.99 1.00 1.06 1.00 serine endoprotease b3235 degS 1.02 1.01 1.32 0.95 1.17 1.05 1.12 1.06 protease b3236 mdh 0.50 0.49 0.33 0.61 0.61 0.74 0.44 0.65 malate dehydrogenase b3237 argR 1.19 1.08 1.96 0.74 1.35 1.33 1.41 1.14 repressor of arg regulon; cer-mediated site specific recombination b3238 yhcN 1.07 1.10 1.75 1.08 0.89 0.94 1.31 0.97 "orf, hypothetical protein" b3239 yhcO 1.25 2.21 2.13 1.00 1.01 1.16 1.86 1.06 "orf, hypothetical protein" b3240 yhcP 1.10 0.65 0.99 0.97 0.93 1.09 0.91 1.00 "orf, hypothetical protein" b3241 yhcQ 0.95 0.96 0.94 0.98 0.90 1.05 0.95 0.98 putative membrane protein b3242 yhcR 0.99 1.28 1.15 0.99 0.87 1.00 1.14 0.95 "orf, hypothetical protein" b3243 yhcS 1.03 1.06 0.99 1.02 1.14 1.14 1.03 1.10 putative transcriptional regulator LYSR-type b3244 tldD 1.05 0.99 1.39 1.02 1.02 1.17 1.14 1.07 suppresses inhibitory activity of CsrA b3245 yhdP 1.01 0.96 1.15 0.82 1.05 1.18 1.04 1.02 "orf, hypothetical protein" b3246 yhdR 0.95 0.99 1.04 1.01 0.94 1.04 0.99 1.00 "orf, hypothetical protein" b3247 cafA 0.98 0.94 0.99 0.87 1.03 1.03 0.97 0.98 bundles of cytoplasmic filaments b3248 yhdE 1.22 1.09 0.96 0.98 1.04 1.08 1.09 1.03 "orf, hypothetical protein" b3249 mreD 1.07 1.11 1.09 1.18 0.98 1.17 1.09 1.11 rod shape-determining protein b3250 mreC 0.88 1.05 0.87 0.98 1.00 1.09 0.93 1.02 rod shape-determining protein b3251 mreB 0.74 0.69 1.01 0.96 1.02 0.91 0.81 0.96 "regulator of ftsI, penicillin binding protein 3, septation function" b3252 yhdA 1.10 1.07 1.19 1.07 0.98 0.99 1.12 1.01 "orf, hypothetical protein" b3253 yhdH 1.08 0.91 1.26 1.50 1.17 0.99 1.31 putative dehydrogenase b3254 b3254 0.96 2.55 0.99 1.12 0.97 0.99 1.50 1.03 "orf, hypothetical protein" b3255 accB 0.71 0.61 0.71 0.88 0.83 0.74 0.68 0.82 "acetylCoA carboxylase, BCCP subunit; carrier of biotin" b3256 accC 0.74 0.51 0.72 0.82 0.83 0.81 0.66 0.82 "acetyl CoA carboxylase, biotin carboxylase subunit" b3257 yhdT 0.94 1.09 0.83 1.04 0.90 0.91 0.95 0.95 "orf, hypothetical protein" b3258 panF 1.05 1.24 0.84 1.02 0.90 0.99 1.04 0.97 sodium/pantothenate symporter b3259 prmA 0.89 1.01 0.97 1.02 0.84 0.92 0.96 0.93 methylase for 50S ribosomal subunit protein L11 b3260 yhdG 0.49 0.35 0.79 0.52 0.65 0.64 0.54 0.60 putative dehydrogenase b3261 fis 0.59 0.45 0.82 0.50 0.67 0.60 0.62 0.59 site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription b3262 yhdJ 1.02 1.08 1.06 1.09 1.01 0.91 1.05 1.00 putative methyltransferase b3263 yhdU 1.15 1.33 0.99 0.98 0.98 0.97 1.16 0.98 "orf, hypothetical protein" b3264 envR 1.02 0.76 0.78 1.09 1.02 1.02 0.85 1.04 putative transcriptional regulator b3265 acrE 1.06 1.24 0.76 0.87 0.93 1.07 1.02 0.96 transmembrane protein affects septum formation and cell membrane permeability b3266 acrF 1.01 1.17 0.96 1.08 1.04 1.16 1.05 1.09 integral transmembrane protein; acridine resistance b3267 yhdV 0.98 1.21 1.25 0.98 0.91 1.01 1.15 0.97 "orf, hypothetical protein" b3268 yhdW 3.16 1.24 0.65 11.51 3.64 7.16 1.68 7.44 putative periplasmic binding transport protein b3269 yhdX 1.11 1.11 1.61 2.93 2.41 2.35 1.28 2.56 putative transport system permease protein b3270 yhdY 1.08 1.16 1.32 2.18 1.08 1.41 1.19 1.56 putative transport system permease protein b3271 yhdZ 1.34 1.97 2.50 3.05 2.26 2.16 1.94 2.49 putative ATP-binding component of a transport system b3279 yrdA 0.77 1.49 0.92 1.01 1.07 1.13 1.00 putative transferase b3280 yrdB 1.02 1.03 0.91 0.94 0.91 0.94 0.99 0.93 "orf, hypothetical protein" b3281 aroE 1.01 1.01 0.93 1.01 1.07 0.95 0.98 1.01 dehydroshikimate reductase b3282 yrdC 0.78 0.79 0.83 0.89 0.98 0.77 0.80 0.88 "orf, hypothetical protein" b3283 yrdD 0.96 0.84 0.92 1.13 1.14 0.95 0.91 1.07 putative DNA topoisomerase b3284 smg 1.31 1.01 1.11 1.22 1.02 1.28 1.14 1.17 "orf, hypothetical protein" b3285 smf_2 1.14 0.95 0.97 1.29 0.98 0.99 1.02 1.09 "orf, fragment 2" b3286 smf_1 1.05 1.12 1.22 1.00 1.00 1.09 1.13 1.03 "orf, fragment 1" b3287 def 1.37 1.18 1.59 0.92 1.11 1.38 1.02 peptide deformylase b3288 fmt 1.04 0.83 0.94 0.96 1.05 0.90 0.94 0.97 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase b3289 sun 1.01 1.07 0.74 1.02 1.04 0.99 0.94 1.02 "orf, hypothetical protein" b3290 trkA 1.03 1.11 1.20 1.25 1.13 1.07 1.19 transport of potassium b3291 mscL 0.80 0.84 0.94 1.01 1.13 1.10 0.86 1.08 mechanosensitive channel b3292 yhdM 1.03 0.99 2.33 1.08 1.05 1.15 1.45 1.09 putative transcriptional regulator b3293 yhdN 1.07 0.97 1.00 1.03 1.01 1.14 1.01 1.06 "orf, hypothetical protein" b3294 rplQ 0.28 0.45 0.57 0.60 0.58 0.37 0.58 50S ribosomal subunit protein L17 b3295 rpoA 0.52 0.47 0.41 0.64 0.46 0.57 0.47 0.56 "RNA polymerase, alpha subunit" b3296 rpsD 0.64 0.60 0.48 0.72 0.85 0.58 0.57 0.72 30S ribosomal subunit protein S4 b3297 rpsK 0.66 0.47 0.77 0.72 0.63 0.57 0.71 30S ribosomal subunit protein S11 b3298 rpsM 0.62 0.48 0.75 0.59 0.57 0.55 0.64 30S ribosomal subunit protein S13 b3299 rpmJ 0.70 0.61 0.51 0.87 0.73 0.64 0.61 0.75 50S ribosomal subunit protein L36 b3300 prlA 0.57 0.45 0.42 0.71 0.55 0.53 0.48 0.60 putative ATPase subunit of translocase b3301 rplO 0.50 0.50 0.62 0.26 0.49 0.50 0.46 50S ribosomal subunit protein L15 b3302 rpmD 0.64 0.52 0.47 0.62 0.47 0.60 0.54 0.56 50S ribosomal subunit protein L30 b3303 rpsE 0.58 0.47 0.38 0.59 0.53 0.53 0.48 0.55 30S ribosomal subunit protein S5 b3304 rplR 0.60 0.60 0.56 0.70 0.50 0.58 0.59 0.59 50S ribosomal subunit protein L18 b3305 rplF 0.58 0.63 0.38 0.62 0.49 0.49 0.53 0.53 50S ribosomal subunit protein L6 b3306 rpsH 0.56 0.62 0.42 0.72 0.52 0.49 0.53 0.58 "30S ribosomal subunit protein S8, and regulator" b3307 rpsN 0.58 0.60 0.47 0.62 0.56 0.50 0.55 0.56 30S ribosomal subunit protein S14 b3308 rplE 0.67 0.51 0.50 0.62 0.45 0.51 0.56 0.53 50S ribosomal subunit protein L5 b3309 rplX 0.64 0.58 0.49 0.99 0.84 0.89 0.57 0.91 50S ribosomal subunit protein L24 b3310 rplN 0.72 0.55 0.57 0.70 0.75 0.89 0.61 0.78 50S ribosomal subunit protein L14 b3311 rpsQ 0.76 0.50 0.61 0.68 0.62 0.62 0.62 0.64 30S ribosomal subunit protein S17 b3312 rpmC 0.98 0.58 0.51 0.91 0.73 1.07 0.69 0.90 50S ribosomal subunit protein L29 b3313 rplP 0.65 0.51 0.72 0.71 0.65 0.58 0.69 50S ribosomal subunit protein L16 b3314 rpsC 0.62 0.45 0.71 0.50 0.71 0.53 0.64 30S ribosomal subunit protein S3 b3315 rplV 0.52 0.43 0.59 0.40 0.51 0.47 0.50 50S ribosomal subunit protein L22 b3316 rpsS 0.57 0.52 0.33 0.66 0.57 0.51 0.47 0.58 30S ribosomal subunit protein S19 b3317 rplB 0.50 0.65 0.54 0.46 0.50 0.55 50S ribosomal subunit protein L2 b3318 rplW 0.51 0.55 0.25 0.69 0.47 0.42 0.44 0.53 50S ribosomal subunit protein L23 b3319 rplD 0.57 0.44 0.29 0.70 0.47 0.49 0.43 0.55 "50S ribosomal subunit protein L4, regulates expression of S10 operon" b3320 rplC 0.53 0.60 0.43 0.78 0.42 0.47 0.52 0.56 50S ribosomal subunit protein L3 b3321 rpsJ 0.63 0.43 0.72 0.77 0.53 0.53 0.67 30S ribosomal subunit protein S10 b3322 pinO 1.08 0.86 0.85 1.10 1.03 0.97 0.99 calcium-binding protein required for initiation of chromosome replication b3323 yheD 1.01 1.16 1.33 1.15 1.02 1.03 1.17 1.07 putative export protein A for general secretion pathway (GSP) b3324 yheE 1.04 1.53 1.67 1.01 1.09 1.15 1.41 1.08 putative general secretion pathway for protein export (GSP) b3325 yheF 1.04 1.22 1.08 1.03 1.15 1.13 1.09 putative general protein secretion protein b3326 yheG 1.20 1.09 1.09 1.01 1.10 1.11 1.13 1.07 putative general secretion pathway for protein export (GSP) (TYPE II TRAFFIC WARDEN ATPASE) b3327 hofF 1.12 1.42 1.16 1.10 1.09 1.01 1.23 1.07 putative general protein secretion protein b3328 hofG 1.05 0.77 0.97 1.05 1.05 1.23 0.93 1.11 putative general protein secretion protein b3329 hofH 1.02 1.35 0.83 1.08 1.06 0.91 1.07 1.02 putative general protein secretion protein b3330 yheH 0.94 1.46 0.83 1.04 0.87 1.05 1.08 0.99 putative export protein for general secretion pathway (GSP) b3331 yheI 1.00 0.79 0.98 0.86 1.58 0.90 1.14 putative export protein I for general secretion pathway (GSP) b3332 yheJ 0.94 1.01 0.92 0.97 0.98 0.98 0.96 putative export protein J for general secretion pathway (GSP) b3333 yheK 1.17 0.80 1.27 0.89 0.88 0.85 1.08 0.87 putative general protein secretion protein b3334 pshM 1.30 1.27 1.01 1.04 1.04 1.28 1.03 putative general secretion b3335 hofD 0.98 1.38 2.00 1.04 0.90 1.05 1.45 1.00 "leader peptidase, integral membrane protein" b3336 bfr 1.62 3.45 1.38 0.99 0.97 2.53 1.11 "bacterioferrin, an iron storage homoprotein" b3337 yheA 1.03 1.18 1.06 1.02 1.11 0.89 1.09 1.01 "orf, hypothetical protein" b3338 yheB 1.06 0.74 1.05 0.89 0.91 0.90 0.95 putative enzyme b3339 tufA 0.61 0.69 0.51 0.79 0.88 0.66 0.60 0.78 protein chain elongation factor EF-Tu (duplicate of tufB) b3340 fusA 0.56 0.44 0.30 0.71 0.43 0.51 0.43 0.55 GTP-binding protein chain elongation factor EF-G b3341 rpsG 0.52 0.53 0.29 0.66 0.33 0.43 0.45 0.47 "30S ribosomal subunit protein S7, initiates assembly" b3342 rpsL 0.62 0.60 0.76 0.50 0.47 0.61 0.58 30S ribosomal subunit protein S12 b3343 yheL 1.16 1.18 1.09 1.03 1.00 1.00 1.14 1.01 "orf, hypothetical protein" b3344 yheM 1.03 1.13 1.05 1.01 0.92 0.95 1.07 0.96 "orf, hypothetical protein" b3345 yheN 1.08 1.01 0.80 0.97 1.00 0.95 0.96 0.97 "orf, hypothetical protein" b3346 yheO 1.04 1.25 1.00 1.02 1.03 1.15 1.02 "orf, hypothetical protein" b3347 fkpA 0.90 0.70 1.28 0.67 0.91 0.98 0.96 0.85 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) b3348 slyX 0.90 1.03 0.97 0.99 1.12 0.97 1.03 host factor for lysis of phiX174 infection b3349 slyD 0.98 1.24 1.03 0.88 0.88 1.11 0.93 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) b3350 kefB 0.98 1.11 0.92 1.03 1.04 1.05 1.00 K+ efflux; NEM-activable K+/H+ antiporter b3351 yheR 1.01 1.06 0.88 1.18 1.02 1.16 0.98 1.12 putative NAD(P)H oxidoreductase b3352 yheS 0.83 0.78 0.63 1.00 0.99 0.96 0.75 0.98 putative ATP-binding component of a transport system b3353 yheT 1.04 0.80 0.76 1.10 1.06 1.00 0.87 1.05 "orf, hypothetical protein" b3354 yheU 0.94 1.05 1.08 1.18 0.96 1.16 1.02 1.10 "orf, hypothetical protein" b3355 prkB 0.97 1.09 1.06 1.14 1.05 1.15 1.04 1.11 probable phosphoribulokinase b3356 yhfA 0.95 0.93 1.23 1.11 0.99 1.20 1.04 1.10 "orf, hypothetical protein" b3357 crp 0.94 0.87 1.03 1.08 1.03 1.09 0.95 1.07 cyclic AMP receptor protein b3358 yhfK 0.90 1.02 1.00 0.94 1.28 1.00 0.97 1.07 "orf, hypothetical protein" b3359 argD 0.77 0.66 1.45 0.84 1.00 0.98 0.96 0.94 acetylornithine delta-aminotransferase b3360 pabA 0.97 1.03 0.94 1.09 0.94 0.98 0.98 1.00 "p-aminobenzoate synthetase, component II" b3361 fic 1.47 1.80 1.75 1.39 1.16 1.26 1.67 1.27 "induced in stationary phase, recognized by rpoS, affects cell division" b3362 yhfG 0.92 1.45 1.45 1.05 1.04 1.02 1.27 1.04 "orf, hypothetical protein" b3363 ppiA 0.91 0.81 0.85 0.81 1.83 0.91 0.86 1.18 peptidyl-prolyl cis-trans isomerase A (rotamase A) b3364 yhfC 1.44 1.41 1.22 1.12 1.19 1.42 1.18 putative transport b3365 nirB 1.02 1.52 1.19 0.84 0.79 0.95 1.24 0.86 nitrite reductase (NAD(P)H) subunit b3366 nirD 0.97 0.86 1.75 0.89 0.90 0.91 1.19 0.90 nitrite reductase (NAD(P)H) subunit b3367 nirC 1.10 0.79 0.75 0.97 0.86 0.97 0.88 0.93 nitrite reductase activity b3368 cysG 1.72 0.98 0.69 0.93 0.98 1.07 1.13 0.99 uroporphyrinogen III methylase; sirohaeme biosynthesis b3369 yhfL 0.93 0.71 0.76 1.09 0.97 0.98 0.80 1.01 "orf, hypothetical protein" b3370 yhfM 1.13 0.98 1.03 0.91 1.09 1.06 1.01 putative amino acid/amine transport protein b3371 yhfN 0.97 0.93 1.04 1.05 0.89 1.05 0.98 1.00 putative transport protein b3372 yhfO 1.13 1.02 0.81 0.99 1.05 1.01 0.99 1.02 "orf, hypothetical protein" b3373 yhfP 1.01 0.83 0.93 1.06 0.98 0.92 0.99 "orf, hypothetical protein" b3374 yhfQ 1.20 0.95 1.01 0.78 0.96 1.08 0.92 putative kinase b3375 yhfR 1.20 1.13 1.18 1.00 1.03 1.07 1.17 1.03 putative transcriptional regulator b3376 yhfS 1.20 1.19 0.95 0.92 0.89 1.01 1.11 0.94 "orf, hypothetical protein" b3377 yhfT 1.08 0.94 0.89 1.02 1.00 1.01 0.97 putative transport system permease protein b3378 yhfU 1.05 1.39 0.90 1.06 1.02 1.15 1.11 1.08 "orf, hypothetical protein" b3379 yhfV 1.02 1.22 0.80 1.09 0.82 0.93 1.01 0.95 putative hydrolase b3380 yhfW 0.93 1.00 0.93 0.85 0.97 0.97 0.92 putative mutase b3381 yhfX 1.45 1.18 0.69 0.95 0.91 0.82 1.11 0.89 "orf, hypothetical protein" b3382 yhfY 1.01 1.18 1.08 0.94 0.97 0.97 1.09 0.96 "orf, hypothetical protein" b3383 yhfZ 1.01 0.96 1.19 0.88 0.77 0.96 1.05 0.87 "orf, hypothetical protein" b3384 trpS 0.73 0.65 0.92 0.80 0.85 0.69 0.86 tryptophan tRNA synthetase b3385 gph 0.96 0.69 0.51 1.08 1.02 0.90 0.72 1.00 phosphoglycolate phosphatase b3386 rpe 0.84 0.53 0.90 0.82 0.81 0.69 0.84 D-ribulose-5-phosphate 3-epimerase b3387 dam 0.96 0.84 0.84 1.07 1.01 0.86 0.88 0.98 DNA adenine methylase b3388 damX 0.99 0.78 0.85 1.16 0.99 1.09 0.87 1.08 putative membrane protein; interferes with cell division b3389 aroB 0.88 0.79 0.99 0.82 0.89 0.81 0.89 0.84 3-dehydroquinate synthase b3390 aroK 0.93 0.86 1.11 0.78 0.85 0.95 0.97 0.86 shikimate kinase I b3391 hofQ 1.06 1.34 0.76 0.96 1.09 1.11 1.05 1.05 putative transport portein b3392 yrfA 0.94 1.13 1.10 1.11 0.92 1.15 1.06 1.06 "orf, hypothetical protein" b3393 yrfB 0.95 1.04 0.91 1.11 0.91 1.10 0.97 1.04 "orf, hypothetical protein" b3394 yrfC 0.91 1.30 1.05 1.03 0.93 1.09 1.09 1.02 "orf, hypothetical protein" b3395 yrfD 1.01 0.97 0.75 0.96 0.75 1.11 0.91 0.94 "orf, hypothetical protein" b3396 mrcA 0.90 1.01 1.01 0.97 0.90 0.96 0.96 peptidoglycan synthetase; penicillin-binding protein 1A b3397 yrfE 0.95 1.19 1.02 1.02 1.04 1.07 1.03 "orf, hypothetical protein" b3398 yrfF 0.99 0.95 1.08 0.84 0.94 0.97 0.95 putative dehydrogenase b3399 yrfG 0.97 1.01 0.99 1.29 1.03 0.99 1.10 putative phosphatase b3400 yrfH 0.97 0.98 0.96 1.06 1.04 1.01 0.97 1.04 "orf, hypothetical protein" b3401 yrfI 0.99 0.96 1.18 0.98 0.96 0.91 1.04 0.95 "orf, hypothetical protein" b3402 yhgE 1.08 1.15 1.05 0.99 1.09 1.11 1.04 putative transport b3403 pckA 0.70 0.65 0.58 0.60 0.55 0.76 0.64 0.64 phosphoenolpyruvate carboxykinase b3404 envZ 1.00 1.45 0.89 1.11 1.04 1.10 1.11 1.08 "protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC" b3405 ompR 1.15 1.16 1.04 1.01 1.06 1.10 1.12 1.06 "response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis" b3406 greB 0.86 1.26 0.82 0.95 0.90 0.99 0.98 0.95 transcription elongation factor and transcript cleavage b3407 yhgF 0.89 0.63 0.69 1.00 1.04 0.84 0.74 0.96 "orf, hypothetical protein" b3408 feoA 0.93 0.86 1.01 0.96 0.99 0.90 0.99 ferrous iron transport protein A b3409 feoB 0.93 1.01 0.72 0.97 0.96 0.86 0.89 0.93 ferrous iron transport protein B b3410 yhgG 1.12 1.42 1.03 0.84 1.10 0.98 1.19 0.97 "orf, hypothetical protein" b3411 yhgA 0.60 1.00 1.09 0.95 0.60 1.01 "orf, hypothetical protein" b3412 bioH 0.93 0.87 0.84 0.93 0.87 1.05 0.88 0.95 biotin biosynthesis; reaction prior to pimeloyl CoA b3413 yhgH 1.09 1.29 0.83 0.94 1.02 0.97 1.07 0.98 "orf, hypothetical protein" b3414 yhgI 1.03 0.80 0.67 0.99 1.07 1.07 0.83 1.04 "orf, hypothetical protein" b3415 gntT 1.06 1.32 0.85 0.77 1.00 1.01 1.08 0.93 high-affinity transport of gluconate / gluconate permease b3416 malQ 0.98 0.81 0.43 0.99 0.96 1.07 0.74 1.01 4-alpha-glucanotransferase (amylomaltase) b3417 malP 0.83 0.70 0.35 0.93 0.89 0.96 0.63 0.93 maltodextrin phosphorylase b3418 malT 0.66 0.56 0.33 0.57 0.81 0.81 0.52 0.73 positive regulator of mal regulon b3419 yhgJ 1.24 1.07 0.95 0.97 1.03 1.16 0.98 "orf, hypothetical protein" b3420 rtcA 1.08 1.00 1.02 0.96 1.02 1.04 1.00 RNA 3'-terminal phosphate cyclase b3421 rtcB 1.18 1.35 1.25 0.95 0.89 1.10 1.26 0.98 "orf, hypothetical protein" b3422 rtcR 1.24 1.04 0.96 0.86 1.14 0.91 putative 2-component regulator b3423 glpR 0.53 0.99 1.06 0.90 0.98 0.89 0.86 0.92 repressor of the glp operon b3424 glpG 0.82 1.32 0.91 0.87 0.97 1.07 0.92 protein of glp regulon b3425 glpE 0.91 0.85 1.47 0.98 0.96 1.00 1.08 0.98 protein of glp regulon b3426 glpD 1.58 1.31 1.23 1.08 1.31 1.02 1.37 1.14 sn-glycerol-3-phosphate dehydrogenase (aerobic) b3427 yzgL 0.99 1.01 0.83 0.85 0.99 0.90 "orf, hypothetical protein" b3428 glgP 1.48 1.14 0.97 1.53 1.83 1.60 1.20 1.65 glycogen phosphorylase b3429 glgA 1.09 0.74 1.53 1.37 1.22 0.92 1.37 glycogen synthase b3430 glgC 1.16 1.14 0.68 1.41 1.35 1.24 0.99 1.33 glucose-1-phosphate adenylyltransferase b3431 glgX 1.15 0.98 0.94 1.30 1.12 1.20 1.02 1.21 "part of glycogen operon, a glycosyl hydrolase, debranching enzyme" b3432 glgB 1.03 1.04 0.73 1.27 1.17 1.05 0.93 1.16 "1,4-alpha-glucan branching enzyme" b3433 asd 0.89 0.70 0.81 1.13 1.15 0.88 0.80 1.05 aspartate-semialdehyde dehydrogenase b3434 yhgN 0.92 1.15 0.99 1.02 0.91 1.02 1.02 0.98 "orf, hypothetical protein" b3435 gntU_2 0.99 0.97 0.90 1.05 1.00 0.89 0.95 0.98 "low-affinity gluconate transport permease protein, fragment 2" b3436 gntU_1 0.94 0.81 0.94 0.94 1.15 0.87 1.01 "low-affinity gluconate transport permease protein, interrupted" b3437 gntK 0.92 1.28 0.85 0.97 1.00 0.92 1.02 0.96 "gluconokinase 2, thermoresistant" b3438 gntR 0.99 1.03 0.75 1.06 1.21 1.16 0.92 1.14 regulator of gluconate (gnt) operon b3439 yhhW 1.01 1.24 1.22 1.18 1.07 1.21 1.16 1.15 "orf, hypothetical protein" b3440 yhhX 0.96 1.06 0.97 1.09 0.91 1.07 1.00 1.02 putative regulator b3441 yhhY 0.92 1.19 1.00 1.18 1.00 1.07 1.04 1.08 "orf, hypothetical protein" b3442 yhhZ 0.98 1.04 1.05 0.94 1.03 1.01 1.01 "orf, hypothetical protein" b3443 yrhA 0.89 1.10 0.99 1.07 0.97 1.12 0.99 1.05 "orf, hypothetical protein" b3444 insA_6 0.97 0.88 0.71 1.14 0.96 1.07 0.85 1.06 IS1 protein InsA b3445 insB_6 0.97 0.84 0.74 1.03 1.06 1.07 0.85 1.05 IS1 protein InsB b3446 yrhB 1.22 1.21 1.92 1.14 0.98 1.09 1.45 1.07 "orf, hypothetical protein" b3447 ggt 1.55 1.18 0.95 1.36 1.08 1.27 1.23 1.24 gamma-glutamyltranspeptidase b3448 yhhA 1.03 2.66 2.94 1.16 1.02 1.14 2.21 1.11 "orf, hypothetical protein" b3449 ugpQ 0.90 1.16 1.47 1.05 0.79 1.06 1.18 0.97 "glycerophosphodiester phosphodiesterase, cytosolic" b3450 ugpC 1.13 1.09 1.12 1.21 1.10 1.11 1.14 ATP-binding component of sn-glycerol 3-phosphate transport system b3451 ugpE 1.12 0.98 1.00 1.13 1.21 1.05 1.11 "sn-glycerol 3-phosphate transport system, integral membrane protein" b3452 ugpA 1.08 1.21 0.94 1.10 1.00 1.11 1.08 1.07 "sn-glycerol 3-phosphate transport system, integral membrane protein" b3453 ugpB 1.13 1.30 0.88 1.34 1.23 1.27 1.10 1.28 sn-glycerol 3-phosphate transport system; periplasmic binding protein b3454 livF 0.89 0.97 0.53 1.03 1.04 1.06 0.80 1.04 ATP-binding component of leucine transport b3455 livG 1.43 0.65 0.40 1.13 2.08 0.82 0.83 1.34 ATP-binding component of high-affinity branched-chain amino acid transport system b3456 livM 0.70 0.87 0.39 0.82 0.89 0.88 0.65 0.86 high-affinity branched-chain amino acid transport b3457 livH 0.79 0.56 0.83 0.91 0.88 0.68 0.87 high-affinity branched-chain amino acid transport system; membrane component b3458 livK 0.65 0.44 0.78 0.91 0.71 0.55 0.80 high-affinity leucine-specific transport system; periplasmic binding protein b3459 yhhK 0.99 1.12 0.88 1.14 0.88 1.09 1.00 1.04 "orf, hypothetical protein" b3460 livJ 0.99 0.51 0.94 0.97 1.07 0.75 0.99 high-affinity amino acid transport system; periplasmic binding protein b3461 rpoH 1.01 1.05 1.59 1.06 1.15 1.33 1.22 1.18 "RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures" b3462 ftsX 1.03 1.06 1.20 0.97 0.94 1.11 1.10 1.01 cell division membrane protein b3463 ftsE 0.96 0.96 0.79 0.99 0.97 0.98 0.90 0.98 ATP-binding component of a membrane-associated complex involved in cell division b3464 ftsY 0.93 1.08 0.97 0.76 0.89 0.97 0.99 0.87 cell division membrane protein b3465 yhhF 1.00 0.86 1.03 0.82 0.96 0.89 0.96 0.89 "orf, hypothetical protein" b3466 yhhL 1.04 1.18 0.95 1.06 0.96 1.11 0.99 "orf, hypothetical protein" b3467 yhhM 0.87 0.88 1.25 1.18 0.64 0.94 1.00 0.92 putative receptor b3468 yhhN 0.99 1.19 1.16 1.09 1.04 1.03 1.11 1.05 putative enzyme b3469 zntA 1.00 1.49 1.07 0.97 0.98 1.25 1.01 zinc-transporting ATPase b3470 yhhP 1.16 0.98 1.30 0.83 0.97 0.97 1.15 0.92 "orf, hypothetical protein" b3471 yhhQ 1.31 0.84 0.99 1.06 0.98 1.08 1.01 "orf, hypothetical protein" b3472 b3472 1.02 0.75 1.11 0.77 1.25 0.97 0.96 1.00 "orf, hypothetical protein" b3473 yhhS 0.78 0.87 0.97 1.10 0.78 0.98 putative transport b3474 yhhT 1.16 1.06 1.32 1.05 1.06 1.05 1.18 1.05 "orf, hypothetical protein" b3475 yhhU 1.06 0.93 1.08 1.01 1.11 1.00 1.07 "orf, hypothetical protein" b3476 nikA 0.97 1.24 0.81 0.95 1.07 1.02 1.01 1.01 periplasmic binding protein for nickel b3477 nikB 0.97 1.14 1.04 0.90 1.03 1.05 0.99 "transport of nickel, membrane protein" b3478 nikC 0.98 1.12 1.11 1.03 1.02 0.93 1.07 0.99 "transport of nickel, membrane protein" b3479 nikD 1.20 0.99 0.90 1.05 1.14 1.10 1.03 ATP-binding protein of nickel transport system b3480 nikE 1.04 1.18 0.93 1.04 0.96 1.02 1.05 1.01 ATP-binding protein of nickel transport system b3481 yhhG 1.12 1.03 1.00 1.04 1.10 1.05 1.05 1.06 "orf, hypothetical protein" b3482 rhsB 1.12 0.84 1.04 0.86 1.00 0.98 0.97 rhsB protein in rhs element b3483 yhhH 1.06 1.56 1.18 1.00 1.02 0.99 1.27 1.00 "orf, hypothetical protein" b3484 yhhI 0.53 0.88 1.13 0.91 0.53 0.97 putative receptor b3485 yhhJ 0.92 1.08 1.02 0.92 1.05 putative transporter b3486 yhiH 0.69 0.57 0.95 1.01 1.09 0.63 1.02 "putative ATP-binding component of a transport system, fragment 1" b3487 yhiI 0.98 0.78 0.58 1.04 0.81 1.07 0.78 0.97 putative membrane protein b3488 yhiJ 0.95 1.51 1.49 1.00 0.89 0.99 1.32 0.96 "orf, hypothetical protein" b3489 yhiK 1.06 1.65 1.01 0.85 0.91 1.36 0.92 "orf, hypothetical protein" b3490 yhiL 0.99 1.68 2.04 1.11 0.93 1.25 1.57 1.10 "orf, hypothetical protein" b3491 yhiM 2.35 2.29 14.29 2.08 1.59 1.83 6.31 1.83 "orf, hypothetical protein" b3492 yhiN 0.92 1.09 0.88 1.06 0.93 1.07 0.96 1.02 "orf, hypothetical protein" b3493 pitA 0.81 1.04 0.78 1.03 0.92 0.93 0.91 low-affinity phosphate transport b3494 yhiO 1.08 1.71 1.37 1.30 0.92 1.22 1.39 1.15 "orf, hypothetical protein" b3495 uspA 1.04 1.06 0.95 1.25 1.25 1.10 1.02 1.20 universal stress protein; broad regulatory function? b3496 yhiP 1.14 1.23 1.09 1.07 1.12 1.19 1.09 putative transport protein b3497 yhiQ 1.05 0.83 0.86 0.97 1.02 0.94 0.95 "orf, hypothetical protein" b3498 prlC 0.94 0.62 1.08 1.04 1.05 0.78 1.06 oligopeptidase A b3499 yhiR 0.96 0.76 0.90 0.91 0.94 0.97 0.87 0.94 "orf, hypothetical protein" b3500 gor 0.97 1.07 0.94 1.05 0.92 0.96 0.99 0.98 glutathione oxidoreductase b3501 arsR 0.76 0.70 1.02 0.97 0.96 0.73 0.98 transcriptional repressor of chromosomal ars operon b3502 arsB 0.99 1.35 0.85 1.06 0.90 0.93 1.06 0.96 arsenical pump membrane protein b3503 arsC 1.31 1.06 1.09 1.00 1.04 1.19 1.04 arsenate reductase b3504 yhiS 1.38 1.40 1.32 0.94 1.03 0.97 1.37 0.98 "orf, hypothetical protein" b3505 trs5_11 0.75 0.70 0.81 1.24 1.05 1.02 0.75 1.10 IS5 transposase b3506 slp 1.90 7.04 5.56 2.54 1.95 2.73 4.83 2.41 outer membrane protein induced after carbon starvation b3507 yhiF 2.15 2.56 1.06 1.02 0.97 2.36 1.02 "orf, hypothetical protein" b3508 yhiD 1.40 1.52 4.00 1.32 0.90 1.35 2.31 1.19 putative transport ATPase b3509 hdeB 18.00 18.32 7.69 12.39 8.66 8.98 14.67 10.01 "orf, hypothetical protein" b3510 hdeA 17.19 22.36 5.56 21.43 23.75 15.98 15.04 20.39 "orf, hypothetical protein" b3511 hdeD 2.62 3.37 4.00 1.93 1.87 1.77 3.33 1.86 "orf, hypothetical protein" b3512 yhiE 35.84 10.00 2.08 1.63 2.05 22.92 1.92 "orf, hypothetical protein" b3513 yhiU 1.47 4.00 1.17 1.09 1.03 2.74 1.10 putative membrane protein b3514 yhiV 2.01 0.97 1.41 1.25 1.60 1.49 1.42 putative transport system permease protein b3515 yhiW 2.38 2.79 3.03 1.46 2.34 1.81 2.73 1.87 putative ARAC-type regulatory protein b3516 yhiX 2.65 1.33 1.71 1.12 1.59 1.99 1.47 putative ARAC-type regulatory protein b3517 gadA 13.27 7.14 19.84 17.24 15.02 10.21 17.37 glutamate decarboxylase isozyme b3518 yhjA 1.04 1.48 1.75 1.10 0.84 0.97 1.42 0.97 putative cytochrome C peroxidase (EC 1.11.1) b3519 treF 1.45 1.55 1.39 1.50 1.39 1.27 1.46 1.39 cytoplasmic trehalase b3520 yhjB 0.87 1.11 1.35 1.07 0.84 1.10 1.11 1.00 putative regulator b3521 yhjC 0.84 0.98 1.06 1.10 0.89 1.07 0.96 1.02 putative transcriptional regulator LYSR-type b3522 yhjD 1.01 1.20 0.89 1.13 0.91 1.17 1.03 1.07 "orf, hypothetical protein" b3523 yhjE 0.46 0.58 0.28 0.43 0.56 0.47 0.44 0.49 putative transport protein b3524 yhjG 1.24 1.49 1.56 1.44 1.30 1.43 1.37 "orf, hypothetical protein" b3525 yhjH 0.97 1.19 1.37 1.08 0.92 1.12 1.18 1.04 "orf, hypothetical protein" b3526 kdgK 1.04 0.96 1.14 0.89 1.14 1.05 1.02 ketodeoxygluconokinase b3527 yhjJ 0.96 1.19 0.95 1.16 1.13 1.14 1.03 1.14 "orf, hypothetical protein" b3528 dctA 0.82 1.01 0.76 0.86 1.03 0.92 0.88 uptake of C4-dicarboxylic acids b3529 yhjK 1.02 0.97 1.05 0.98 0.92 0.93 1.01 0.94 "orf, hypothetical protein" b3530 yhjL 1.56 1.17 1.16 1.20 1.56 1.18 putative oxidoreductase subunit b3531 yhjM 0.97 1.03 1.05 1.14 0.94 1.06 1.02 1.05 putative endoglucanase b3532 yhjN 1.26 1.09 0.97 1.25 1.02 1.17 1.11 1.15 "orf, hypothetical protein" b3533 yhjO 0.98 1.20 1.39 1.06 1.09 1.33 1.19 1.16 putative cellulose synthase b3534 yhjQ 0.92 0.99 0.98 1.14 1.00 1.16 0.96 1.10 "orf, hypothetical protein" b3535 yhjR 0.93 2.19 0.88 1.12 0.94 1.16 1.33 1.07 "orf, hypothetical protein" b3536 yhjS 1.44 0.99 0.92 1.27 1.14 1.32 1.12 1.24 putative protease b3537 yhjT 1.05 1.03 0.83 1.22 0.92 0.94 0.97 1.03 "orf, hypothetical protein" b3538 yhjU 1.31 3.23 0.90 1.07 1.09 2.27 1.02 "orf, hypothetical protein" b3539 yhjV 1.09 1.18 0.96 1.03 1.00 1.13 1.00 putative transporter protein b3540 dppF 1.28 1.75 1.39 1.13 1.52 1.26 putative ATP-binding component of dipeptide transport system b3541 dppD 1.32 1.52 1.32 1.26 1.30 1.42 1.29 putative ATP-binding component of dipeptide transport system b3542 dppC 1.08 1.15 1.43 1.14 1.16 1.22 1.15 dipeptide transport system permease protein 2 b3543 dppB 1.08 1.02 1.23 1.15 1.18 1.18 1.11 1.17 dipeptide transport system permease protein 1 b3544 dppA 1.74 2.14 0.77 1.63 2.45 1.32 1.55 1.80 dipeptide transport protein b3546 yhjW 0.91 1.32 0.89 0.91 0.89 1.11 0.90 "orf, hypothetical protein" b3547 yhjX 0.90 0.78 1.02 0.94 0.92 0.84 0.96 putative resistance protein b3548 yhjY 1.20 1.05 1.29 1.10 1.13 1.20 putative lipase b3549 tag 1.01 1.10 1.12 1.09 1.02 1.23 1.08 1.11 "3-methyl-adenine DNA glycosylase I, constitutive" b3550 yiaC 1.50 1.02 1.04 0.98 1.03 1.06 1.19 1.02 "orf, hypothetical protein" b3551 bisC 1.17 1.19 0.90 0.94 1.07 1.12 1.09 1.04 biotin sulfoxide reductase b3552 yiaD 0.90 0.82 0.89 0.95 0.94 1.05 0.87 0.98 putative outer membrane protein b3553 yiaE 0.85 0.94 0.57 1.02 1.57 0.90 0.79 1.16 putative dehydrogenase b3554 yiaF 1.16 1.19 1.75 0.92 1.04 1.11 1.37 1.02 "orf, hypothetical protein" b3555 yiaG 1.86 3.99 2.86 1.79 1.24 1.69 2.90 1.57 "orf, hypothetical protein" b3556 cspA 1.01 1.19 1.08 0.87 0.98 1.16 1.09 1.00 "cold shock protein 7.4, transcriptional activator of hns" b3557 yi5A 2.28 0.72 1.05 0.87 0.82 1.50 0.91 IS150 hypothetical protein b3558 t150 1.30 1.05 1.05 1.09 1.12 1.18 1.09 IS150 putative transposase b3559 glyS 0.74 0.52 0.85 0.99 0.71 0.63 0.85 "glycine tRNA synthetase, beta subunit" b3560 glyQ 0.79 0.81 0.48 0.92 0.79 0.69 0.69 0.80 "glycine tRNA synthetase, alpha subunit" b3561 yiaH 2.10 0.88 1.52 1.44 1.07 1.49 1.34 "orf, hypothetical protein" b3562 yiaA 0.99 1.14 1.08 0.80 1.00 1.06 0.96 "orf, hypothetical protein" b3563 yiaB 0.91 0.60 1.03 0.84 1.01 0.76 0.96 "orf, hypothetical protein" b3564 xylB 1.10 1.43 1.89 1.08 1.26 1.03 1.47 1.12 xylulokinase b3565 xylA 1.51 1.13 1.08 1.01 0.92 1.21 1.24 1.05 D-xylose isomerase b3566 xylF 1.37 1.23 0.95 1.05 1.13 1.30 1.04 xylose binding protein transport system b3567 xylG 0.86 1.18 1.18 1.00 1.11 0.94 1.07 1.02 putative ATP-binding protein of xylose transport system b3568 xylH 1.34 0.84 0.85 1.15 1.09 1.09 1.03 "putative xylose transport, membrane component" b3569 xylR 1.15 1.26 1.49 1.08 1.01 0.97 1.30 1.02 putative regulator of xyl operon b3570 bax 0.61 0.45 1.47 0.60 0.90 0.85 0.84 0.78 putative ATP-binding protein b3571 malS 1.24 1.09 1.05 1.13 1.21 1.17 1.13 alpha-amylase b3572 avtA 0.75 0.79 0.75 0.88 1.32 0.79 0.76 1.00 "alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C" b3573 yiaI 1.02 1.26 0.95 1.03 0.99 0.91 1.08 0.98 "orf, hypothetical protein" b3574 yiaJ 0.83 0.97 1.16 0.92 0.93 0.94 0.99 0.93 putative regulator b3575 yiaK 0.87 1.23 1.04 1.10 1.65 0.79 1.05 1.18 putative dehydrogenase b3576 yiaL 1.08 0.93 1.04 0.87 1.10 1.00 1.00 putative lipase b3577 yiaM 0.98 0.98 0.93 1.06 0.98 1.15 0.96 1.06 "orf, hypothetical protein" b3578 yiaN 0.99 1.26 0.91 0.96 0.88 1.13 0.92 putative membrane protein b3579 yiaO 0.99 1.27 0.93 1.00 0.96 1.11 1.06 1.02 putative solute-binding transport protein b3580 lyxK 1.29 1.36 1.04 1.05 1.04 1.00 1.23 1.03 "L-xylulose kinase, cryptic" b3581 sgbH 1.01 1.08 0.72 1.09 0.91 1.13 0.94 1.04 probable 3-hexulose 6-phosphate synthase b3582 sgbU 0.93 1.19 0.99 0.94 0.98 1.06 0.97 probable 3-hexulose-6-phosphate isomerase b3583 sgbE 0.99 1.33 1.23 1.11 0.97 1.09 1.18 1.06 putative epimerase/aldolase b3584 yiaT 1.02 1.00 1.01 1.15 0.97 1.01 1.01 1.04 putative outer membrane protein b3585 yiaU 1.02 1.28 1.49 1.12 1.07 1.12 1.26 1.10 putative transcriptional regulator LYSR-type b3586 yiaV 1.10 1.41 1.15 0.76 1.25 1.26 1.05 putative membrane protein b3587 yiaW 2.36 0.94 1.12 0.90 0.98 1.65 1.00 "orf, hypothetical protein" b3588 aldB 1.34 1.30 1.23 1.27 1.10 1.46 1.29 1.28 aldehyde dehydrogenase B (lactaldehyde dehydrogenase) b3589 yiaY 1.08 1.11 1.00 1.06 0.96 0.88 1.06 0.97 putative oxidoreductase b3590 selB 1.03 0.57 1.02 0.86 0.94 0.80 0.94 selenocysteinyl-tRNA-specific translation factor b3591 selA 0.92 0.94 0.61 0.99 0.75 1.05 0.82 0.93 selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase b3592 yibF 1.11 1.21 1.00 1.08 0.99 1.07 1.11 1.05 putative S-transferase b3593 rhsA 1.13 1.02 1.07 0.83 1.00 1.08 0.97 rhsA protein in rhs element b3594 yibA 1.61 1.82 1.06 0.87 0.92 1.72 0.95 "orf, hypothetical protein" b3595 yibJ 1.10 0.80 1.02 1.19 0.81 0.94 0.97 0.98 "orf, hypothetical protein" b3596 yibG 2.04 0.93 0.80 0.94 2.04 0.89 "orf, hypothetical protein" b3597 yibH 1.38 0.77 1.00 1.59 0.85 1.08 1.15 putative membrane protein b3598 yibI 0.90 1.16 1.37 1.04 0.62 0.98 1.14 0.88 "orf, hypothetical protein" b3599 mtlA 0.96 1.01 0.77 1.09 0.98 1.15 0.91 1.07 "PTS system, mannitol-specific enzyme IIABC components" b3600 mtlD 1.21 0.82 1.07 1.02 1.19 1.01 1.09 mannitol-1-phosphate dehydrogenase b3601 mtlR 0.96 1.10 1.04 1.11 1.04 1.28 1.03 1.14 repressor for mtl b3602 yibL 0.97 0.92 1.00 0.99 0.93 1.02 0.96 0.98 "orf, hypothetical protein" b3603 lldP 0.95 0.88 1.06 1.07 1.21 0.92 1.11 L-lactate permease b3604 lldR 1.12 0.96 0.69 1.08 0.96 1.09 0.92 1.04 transcriptional regulator b3605 lldD 1.08 1.04 1.23 1.10 0.94 1.20 1.12 1.08 L-lactate dehydrogenase b3606 yibK 0.91 1.08 0.96 0.91 0.86 0.94 0.98 0.90 "orf, hypothetical protein" b3607 cysE 1.06 0.98 1.12 1.09 1.01 1.11 1.05 1.07 serine acetyltransferase b3608 gpsA 0.74 0.86 0.65 1.02 0.90 0.93 0.75 0.95 glycerol-3-phosphate dehydrogenase (NAD+) b3609 secB 0.84 0.68 0.63 1.00 1.02 0.88 0.72 0.97 protein export; molecular chaperone; may bind to signel sequence b3610 grxC 0.98 1.08 0.62 1.04 0.93 1.01 0.89 0.99 glutaredoxin 3 b3611 yibN 0.95 0.82 0.76 1.02 0.83 0.91 0.84 0.92 "orf, hypothetical protein" b3612 yibO 0.82 0.81 0.51 1.05 1.07 1.21 0.71 1.11 "putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase" b3613 yibP 1.02 0.90 0.83 0.97 1.17 1.03 0.92 1.06 putative membrane protein b3614 yibQ 1.00 0.79 0.97 1.10 1.05 0.90 1.04 "orf, hypothetical protein" b3615 yibD 0.85 1.25 1.23 1.59 0.93 1.12 1.11 1.21 putative regulator b3616 tdh 1.09 1.30 1.14 1.19 0.93 1.05 1.18 1.06 threonine dehydrogenase b3617 kbl 1.10 1.04 1.02 1.09 0.93 1.11 1.05 1.04 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) b3618 htrL 0.92 1.43 0.97 0.89 0.85 1.17 0.90 involved in lipopolysaccharide biosynthesis b3619 rfaD 0.90 0.94 0.94 1.04 1.01 1.02 0.93 1.02 ADP-L-glycero-D-mannoheptose-6-epimerase b3620 rfaF 0.98 0.93 0.58 1.09 1.15 1.10 0.83 1.11 ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis b3621 rfaC 1.00 1.13 1.18 1.07 1.02 1.03 1.10 1.04 heptosyl transferase I; lipopolysaccharide core biosynthesis b3622 rfaL 1.18 0.69 1.47 0.98 0.87 0.99 1.11 0.95 O-antigen ligase; lipopolysaccharide core biosynthesis b3623 rfaK 0.93 1.08 1.35 1.08 0.90 0.82 1.12 0.93 probably hexose transferase; lipopolysaccharide core biosynthesis b3624 rfaZ 1.05 0.85 0.92 1.08 0.94 0.98 0.94 1.00 lipopolysaccharide core biosynthesis b3625 rfaY 0.94 1.00 1.05 1.10 0.92 0.97 1.02 lipopolysaccharide core biosynthesis b3626 rfaJ 1.05 0.79 1.14 0.98 0.97 0.99 0.99 0.98 UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase b3627 rfaI 1.08 0.78 1.41 1.10 0.86 0.89 1.09 0.95 "UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase" b3628 rfaB 1.11 0.95 0.96 1.87 0.71 1.03 1.18 "UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6- D-galactosyltransferase" b3629 rfaS 0.97 0.99 1.52 1.06 0.92 1.00 1.16 0.99 lipopolysaccharide core biosynthesis b3630 rfaP 1.06 0.98 1.16 1.08 1.07 1.17 1.07 1.11 lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS co b3631 rfaG 0.91 0.82 0.76 1.18 1.03 1.13 0.83 1.11 glucosyltransferase I; lipopolysaccharide core biosynthesis b3632 rfaQ 1.03 0.84 0.73 1.12 1.09 1.05 0.87 1.09 lipopolysaccharide core biosynthesis b3633 kdtA 1.03 0.97 0.96 0.95 1.16 1.07 0.99 1.06 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) b3634 kdtB 0.94 1.16 0.78 1.05 0.89 0.97 0.96 0.97 putative enzyme of lipopolysaccharide synthesis b3635 mutM 0.96 1.37 1.09 0.94 0.93 1.07 1.14 0.98 formamidopyrimidine DNA glycosylase b3636 rpmG 0.62 0.66 0.95 0.45 0.71 0.79 0.74 0.65 50S ribosomal subunit protein L33 b3637 rpmB 0.49 0.47 1.20 0.48 0.58 0.62 0.72 0.56 50S ribosomal subunit protein L28 b3638 radC 0.91 1.06 0.85 0.83 0.86 0.86 0.94 0.85 DNA repair protein b3639 dfp 1.08 0.89 0.61 0.94 0.91 0.80 0.86 0.88 flavoprotein affecting synthesis of DNA and pantothenate metabolism b3640 dut 0.58 0.54 0.89 0.86 0.79 0.56 0.85 deoxyuridinetriphosphatase b3641 ttk 0.76 0.58 0.69 0.84 0.85 0.84 0.68 0.84 putative transcriptional regulator b3642 pyrE 0.99 1.00 0.89 0.77 0.89 0.78 0.96 0.81 orotate phosphoribosyltransferase b3643 rph 0.77 0.92 1.00 0.78 0.84 0.83 0.90 0.82 RNase PH b3644 yicC 1.16 0.98 1.54 1.03 1.03 1.02 1.23 1.03 putative alpha helix protein b3645 dinD 1.03 1.28 1.28 0.98 0.98 1.12 1.20 1.03 DNA-damage-inducible protein b3646 yicG 1.19 0.90 1.03 0.86 1.09 1.05 0.99 "orf, hypothetical protein" b3647 yicF 1.06 0.91 1.17 1.11 1.38 0.99 1.22 putative enzyme b3648 gmk 0.84 0.74 1.09 1.11 1.15 1.04 0.89 1.10 guanylate kinase b3649 rpoZ 0.89 0.83 0.90 1.18 0.74 0.86 0.94 "RNA polymerase, omega subunit" b3650 spoT 0.95 0.82 0.60 0.99 1.41 0.78 0.79 1.06 "(p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase" b3651 spoU 1.02 0.71 0.93 1.03 0.85 0.86 0.94 putative RNA methylase b3652 recG 0.97 1.16 0.68 0.94 1.07 0.91 0.94 0.97 "DNA helicase, resolution of Holliday junctions, branch migration" b3653 gltS 1.11 1.15 0.78 1.04 1.12 1.13 0.98 glutamate transport b3654 yicE 0.94 1.10 1.14 0.86 0.97 1.02 0.99 putative transport protein b3655 yicH 0.99 1.03 1.14 1.11 1.00 1.13 1.05 1.08 "orf, hypothetical protein" b3656 yicI 1.15 1.07 0.80 0.95 1.15 0.94 "orf, hypothetical protein" b3657 yicJ 0.99 1.26 1.33 1.01 0.74 1.07 1.19 0.94 putative permease b3659 yicK 0.54 1.13 0.97 1.02 0.54 1.04 two-module transport protein b3660 yicL 0.85 1.08 1.61 0.98 0.82 0.85 1.18 0.88 putative permease transporter b3661 nlpA 0.72 0.68 1.67 0.60 0.60 0.78 1.02 0.66 lipoprotein-28 b3662 yicM 0.75 0.90 0.95 1.03 0.98 0.83 0.99 putative transport protein b3663 yicN 1.16 1.26 1.03 1.17 0.77 1.00 1.15 0.98 "orf, hypothetical protein" b3664 yicO 1.11 1.10 1.04 1.06 0.84 1.11 0.98 "orf, hypothetical protein" b3665 yicP 1.12 0.89 0.76 0.98 0.83 0.84 0.92 0.88 probable adenine deaminase (synthesis xanthine) b3666 uhpT 0.97 1.12 0.87 0.95 0.90 0.91 0.99 0.92 hexose phosphate transport protein b3667 uhpC 0.97 1.19 1.00 0.86 0.97 1.13 1.05 0.99 regulator of uhpT b3668 uhpB 1.09 1.13 0.78 1.05 1.05 1.05 1.00 1.05 sensor histidine protein kinase phosphorylates UhpA b3669 uhpA 0.99 0.90 0.98 1.00 1.11 0.95 1.03 "response regulator, positive activator of uhpT transcription (sensor, uhpB)" b3670 ilvN 0.73 0.57 0.71 0.90 0.71 0.85 0.67 0.82 "acetolactate synthase I, valine sensitive, small subunit" b3671 ilvB 0.43 0.48 0.65 0.74 0.73 0.64 0.52 0.70 "acetolactate synthase I,valine-sensitive, large subunit" b3672 ivbL 0.92 0.59 1.35 0.78 0.91 1.04 0.95 0.91 ilvB operon leader peptide b3673 emrD 1.03 1.06 0.83 1.11 1.01 1.07 0.97 1.06 2-module integral membrane pump; multidrug resistance b3674 yidF 0.97 1.10 0.97 1.10 0.84 1.16 1.01 1.03 putative transcriptional regulator b3675 yidG 0.95 1.09 1.00 0.81 0.96 1.02 0.92 "orf, hypothetical protein" b3676 yidH 0.98 1.23 1.30 0.99 0.93 0.95 1.17 0.96 "orf, hypothetical protein" b3677 yidI 0.93 1.03 0.97 0.86 0.94 0.98 0.92 "orf, hypothetical protein" b3678 yidJ 0.89 1.80 1.11 0.80 0.90 1.35 0.94 putative sulfatase b3679 yidK 1.51 1.06 0.86 1.06 1.51 0.99 putative cotransporter b3680 yidL 0.94 0.98 1.56 1.05 1.17 1.09 1.16 1.10 putative ARAC-type regulatory protein b3681 glvG 1.35 0.99 1.17 probable 6-phospho-beta-glucosidase b3682 glvB 1.30 1.03 0.98 0.86 1.03 1.17 0.96 "PTS system, arbutin-like IIB component" b3683 glvC 1.29 1.41 0.86 0.94 1.01 1.19 0.98 "PTS system, arbutin-like IIC component" b3684 yidP 0.95 1.20 1.14 1.00 0.85 0.87 1.10 0.91 putative transcriptional regulator b3685 yidE 1.06 1.06 0.99 1.11 1.09 1.06 1.06 putative transport protein b3686 ibpB 0.98 1.28 0.94 1.05 1.06 1.02 1.07 1.04 heat shock protein b3687 ibpA 1.09 0.94 0.98 0.97 1.06 1.04 1.00 1.02 heat shock protein b3688 yidQ 1.64 1.21 1.64 1.00 1.30 1.32 1.50 1.21 "orf, hypothetical protein" b3689 yidR 0.92 1.52 0.96 1.03 1.09 1.22 1.03 "orf, hypothetical protein" b3690 yidS 1.19 1.09 1.02 1.13 1.19 1.08 "orf, hypothetical protein" b3691 dgoT 1.17 1.14 0.98 1.01 1.16 1.15 1.05 D-galactonate transport b3692 dgoA 1.08 1.26 1.18 1.05 0.91 1.10 1.17 1.02 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase b3693 dgoK 1.07 1.02 1.06 0.90 1.00 1.05 0.99 2-oxo-3-deoxygalactonate kinase b3694 b3694 0.89 1.03 0.88 0.96 0.93 0.96 putative FADA-type transcriptional regulator b3695 yidW 0.89 0.96 0.61 1.05 0.93 0.99 0.82 0.99 regulator protein for dgo operon b3696 yidX 1.00 1.03 1.00 0.90 1.00 0.98 putative replicase EC 2.7.- b3697 yidA 1.03 1.01 0.91 0.89 1.03 0.94 "orf, hypothetical protein" b3698 yidB 0.93 1.80 1.59 1.17 0.97 1.17 1.44 1.10 "orf, hypothetical protein" b3699 gyrB 0.96 0.78 0.88 0.86 0.96 0.84 "DNA gyrase subunit B, type II topoisomerase, ATPase activity" b3700 recF 0.98 0.91 1.14 0.94 0.93 0.90 1.01 0.92 "ssDNA and dsDNA binding, ATP binding" b3701 dnaN 1.00 1.07 1.22 1.25 1.33 1.20 1.10 1.26 "DNA polymerase III, beta-subunit" b3702 dnaA 1.03 0.85 1.67 1.09 1.13 1.08 1.18 1.10 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator b3703 rpmH 0.58 0.98 0.72 0.70 0.71 0.78 0.71 50S ribosomal subunit protein L34 b3704 rnpA 0.69 0.61 0.68 0.73 0.85 0.66 0.66 0.75 "RNase P, protein component; protein C5; processes tRNA, 4.5S RNA" b3705 yidC 1.93 1.02 4.04 1.01 1.93 2.02 60 KD inner-membrane protein b3706 thdF 1.04 0.99 1.18 1.15 0.94 0.87 1.07 0.99 GTP-binding protein in thiophene and furan oxidation b3707 tnaL 0.63 0.98 0.90 0.93 0.63 0.94 tryptophanase leader peptide b3708 tnaA 0.88 1.02 0.79 0.98 0.83 0.98 0.90 0.93 tryptophanase b3709 tnaB 1.10 1.40 0.93 1.02 0.98 1.20 1.14 1.07 low affinity tryptophan permease b3710 yidY 1.17 0.70 1.20 0.97 0.92 0.94 1.03 putative transport protein b3711 yidZ 0.97 1.16 0.90 1.15 0.86 1.04 1.01 1.02 putative transcriptional regulator LYSR-type b3712 yieE 1.56 2.01 2.17 1.66 1.39 1.56 1.91 1.54 "orf, hypothetical protein" b3713 yieF 1.24 2.94 1.69 1.28 1.04 1.12 1.96 1.15 "orf, hypothetical protein" b3714 yieG 0.82 1.47 1.79 2.26 1.70 1.15 1.92 putative membrane / transport protein b3715 yieH 0.95 1.01 1.08 0.89 0.86 0.94 1.01 0.90 putative phosphatase b3716 yieI 1.01 1.05 1.28 1.06 1.05 0.95 1.11 1.02 "orf, hypothetical protein" b3717 yieJ 1.00 1.25 0.92 1.09 0.82 0.94 1.06 0.95 "orf, hypothetical protein" b3718 yieK 0.94 1.21 1.18 1.01 0.93 0.90 1.11 0.95 putative isomerase b3719 yieL 0.91 1.44 0.85 1.01 1.06 0.99 1.07 1.02 putative xylanase b3720 yieC 1.09 1.45 1.49 0.97 0.92 0.94 1.34 0.94 putative receptor protein b3721 bglB 1.08 1.14 0.77 1.11 0.94 1.27 1.00 1.11 phospho-beta-glucosidase B; cryptic b3722 bglF 0.98 1.11 1.14 1.10 1.01 1.08 1.08 1.06 "PTS system beta-glucosides, enzyme II, cryptic" b3723 bglG 1.10 1.49 0.92 1.16 1.07 1.22 1.17 1.15 positive regulation of bgl operon b3724 phoU 1.14 1.16 1.04 1.15 1.05 1.19 1.11 1.13 negative regulator for pho regulon and putative enzyme in phosphate metabolism b3725 pstB 0.87 1.06 1.06 1.16 1.09 0.97 1.10 ATP-binding component of high-affinity phosphate-specific transport system b3726 pstA 1.10 1.06 0.97 0.99 0.98 0.95 1.04 0.97 high-affinity phosphate-specific transport system b3727 pstC 1.06 0.85 0.96 1.05 1.14 0.95 1.05 "high-affinity phosphate-specific transport system, cytoplasmic membrane component" b3728 pstS 0.91 1.27 1.12 1.12 1.03 1.09 1.09 high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein b3729 glmS 0.56 0.66 0.50 0.60 0.70 0.70 0.57 0.67 L-glutamine:D-fructose-6-phosphate aminotransferase b3730 glmU 0.77 0.48 0.89 0.75 1.09 0.66 0.71 0.83 N-acetyl glucosamine-1-phosphate uridyltransferase b3731 atpC 0.58 0.82 0.57 0.73 0.98 0.70 0.76 "membrane-bound ATP synthase, F1 sector, epsilon-subunit" b3732 atpD 0.38 0.36 0.37 0.50 0.44 0.50 0.37 0.48 "membrane-bound ATP synthase, F1 sector, beta-subunit" b3733 atpG 0.38 0.36 0.29 0.55 0.54 0.45 0.34 0.51 "membrane-bound ATP synthase, F1 sector, gamma-subunit" b3734 atpA 0.35 0.30 0.28 0.44 0.31 0.40 0.31 0.38 "membrane-bound ATP synthase, F1 sector, alpha-subunit" b3735 atpH 0.41 0.33 0.26 0.53 0.74 0.86 0.33 0.71 "membrane-bound ATP synthase, F1 sector, delta-subunit" b3736 atpF 0.41 0.38 0.28 0.49 0.40 0.48 0.36 0.46 "membrane-bound ATP synthase, F0 sector, subunit b" b3737 atpE 1.49 0.53 0.48 0.50 1.49 0.50 "membrane-bound ATP synthase, F0 sector, subunit c" b3738 atpB 0.41 0.56 0.44 0.55 0.44 0.48 0.48 "membrane-bound ATP synthase, F0 sector, subunit a" b3739 atpI 0.50 0.94 0.48 0.71 0.70 0.72 0.63 "membrane-bound ATP synthase, dispensable protein, affects expression of atpB" b3740 gidB 0.97 0.80 1.04 0.92 0.79 0.98 0.94 0.90 glucose-inhibited division; chromosome replication? b3741 gidA 0.82 0.90 0.74 0.81 0.79 0.86 0.78 glucose-inhibited division; chromosome replication? b3742 mioC 0.76 0.79 0.91 0.65 0.96 0.89 0.82 0.83 initiation of chromosome replication b3743 asnC 1.00 1.20 0.72 0.98 0.90 1.09 0.97 0.99 "regulator for asnA, asnC and gidA" b3744 asnA 0.91 1.01 1.16 0.76 0.70 0.72 1.03 0.73 asparagine synthetase A b3745 yieM 1.16 1.11 0.88 0.86 0.99 1.02 1.05 0.96 "orf, hypothetical protein" b3746 yieN 1.18 1.23 1.15 1.23 1.18 1.21 1.19 putative 2-component regulator b3747 kup 1.32 1.30 0.86 1.02 0.91 1.08 1.16 1.00 low affinity potassium transport system b3748 rbsD 0.58 0.99 1.44 0.86 0.58 1.10 D-ribose high-affinity transport system; membrane-associated protein b3749 rbsA 1.01 0.85 1.35 0.95 0.93 0.98 1.07 0.95 ATP-binding component of D-ribose high-affinity transport system b3750 rbsC 1.02 1.10 0.70 1.02 1.21 0.99 0.94 1.07 D-ribose high-affinity transport system b3751 rbsB 1.26 1.01 0.81 1.10 1.23 1.14 1.05 D-ribose periplasmic binding protein b3752 rbsK 1.01 0.93 0.69 1.05 0.87 1.16 0.88 1.03 ribokinase b3753 rbsR 1.07 1.30 0.93 1.16 1.15 1.15 1.10 1.15 regulator for rbs operon b3754 yieO 1.21 1.27 0.98 1.17 1.16 1.24 1.10 putative transport protein b3755 yieP 0.85 0.84 1.01 0.89 0.77 0.91 0.90 0.86 "orf, hypothetical protein" b3762 yifA 0.98 0.92 1.03 0.91 0.87 1.02 0.98 0.93 "orf, hypothetical protein" b3763 pssR 0.92 0.77 1.47 1.03 0.90 0.98 1.05 0.97 regulator of pssA b3764 yifE 0.96 1.45 1.72 1.11 1.01 1.14 1.38 1.09 "orf, hypothetical protein" b3765 yifB 1.05 1.16 1.41 1.03 0.88 1.10 1.21 1.00 putative 2-component regulator b3766 ilvL 0.86 0.44 1.03 0.59 0.87 1.16 0.78 0.87 ilvGEDA operon leader peptide b3767 ilvG_1 0.74 0.60 1.15 0.77 0.80 0.60 0.83 0.72 "acetolactate synthase II, large subunit, cryptic, interrupted" b3768 #N/A 0.89 0.93 1.04 0.71 0.89 0.89 #N/A b3769 ilvM 0.98 1.08 0.67 1.06 0.99 0.85 0.91 0.97 "acetolactate synthase II, valine insensitive, small subunit" b3770 ilvE 0.76 0.55 0.86 0.70 0.66 0.66 0.74 branched-chain amino-acid aminotransferase b3771 ilvD 0.76 0.84 0.54 0.76 0.65 0.48 0.71 0.63 dihydroxyacid dehydratase b3772 ilvA 0.95 0.94 0.74 0.76 0.87 0.66 0.88 0.76 threonine deaminase (dehydratase) b3773 ilvY 0.95 0.96 0.91 0.98 0.89 0.90 0.94 0.92 positive regulator for ilvC b3774 ilvC 0.71 0.55 0.55 0.52 0.80 0.54 0.60 0.62 ketol-acid reductoisomerase b3775 ppiC 0.79 0.87 1.41 0.75 1.02 0.84 1.02 0.87 peptidyl-prolyl cis-trans isomerase C (rotamase C) b3776 b3776 0.99 1.15 1.61 1.00 0.93 1.02 1.25 0.98 "orf, hypothetical protein" b3777 yifN 0.96 2.51 1.79 1.09 0.84 1.02 1.75 0.98 "orf, hypothetical protein" b3778 rep 0.94 0.91 0.94 0.98 1.07 0.92 1.00 "rep helicase, a single-stranded DNA dependent ATPase" b3779 gppA 1.03 0.79 0.98 0.97 1.17 0.85 0.93 1.00 guanosine pentaphosphatase; exopolyphosphatase b3780 rhlB 0.86 0.81 1.02 0.76 0.86 0.86 putative ATP-dependent RNA helicase b3781 trxA 1.19 1.09 1.08 0.68 1.24 1.39 1.12 1.10 thioredoxin 1 b3782 rhoL 0.78 0.58 0.83 1.14 1.04 0.94 0.73 1.04 rho operon leader peptide b3783 rho 0.67 0.61 0.63 0.96 0.98 0.78 0.64 0.91 transcription termination factor Rho; polarity suppressor b3784 rfe 1.03 0.66 0.99 1.02 1.08 1.06 0.89 1.05 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA) b3785 wzzE 1.10 0.98 0.89 1.05 1.08 1.24 0.99 1.12 putative transport protein b3786 wecB 0.81 0.87 1.04 1.06 0.96 0.84 1.02 UDP-N-acetyl glucosamine -2-epimerase; synthesis of enterobacterial common antigen (ECA) b3787 wecC 0.87 0.75 0.70 0.91 0.92 0.81 0.77 0.88 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; synthesis of enterobacterial common antigen (ECA) b3788 rffG 0.88 0.89 0.78 0.86 0.74 0.85 0.85 0.82 "dTDP-glucose 4,6-dehydratase" b3789 rffH 1.06 0.93 0.74 1.01 0.96 1.02 0.91 1.00 glucose-1-phosphate thymidylyltransferase b3790 wecD 0.91 1.09 0.85 1.00 0.88 0.99 0.95 0.96 "orf, hypothetical protein" b3791 wecE 1.08 1.09 0.95 0.93 0.97 1.09 1.04 1.00 putative regulator b3792 wzxE 1.01 1.38 0.93 1.10 0.96 1.03 1.11 1.03 putative cytochrome b3793 wecF 1.11 1.06 0.88 0.97 0.92 1.01 1.02 0.97 TDP-Fuc4NAc:lipidII transferase; synthesis of enterobacterial common antigen (ECA) b3794 wecG 1.17 1.23 0.97 0.95 0.94 1.13 1.12 1.01 probable UDP-N-acetyl-D-mannosaminuronic acid transferase; synthesis of enterobacterial common antigen (ECA) b3795 yifK 1.01 0.79 0.83 0.78 0.97 0.84 0.88 0.86 putative amino acid/amine transport protein b3800 aslB 1.26 0.93 0.93 0.90 0.88 1.09 0.90 putative arylsulfatase regulator b3801 aslA 1.09 1.41 0.76 1.15 0.98 1.20 1.09 1.11 arylsulfatase b3802 hemY 0.92 0.83 1.00 0.91 1.03 1.02 0.92 0.99 a late step of protoheme IX synthesis b3803 hemX 0.90 0.83 0.75 0.95 1.09 1.06 0.83 1.03 uroporphyrinogen III methylase b3804 hemD 0.92 0.81 0.78 1.00 1.45 1.00 0.84 1.15 uroporphyrinogen III synthase b3805 hemC 0.93 0.65 0.66 0.83 0.87 0.89 0.75 0.86 porphobilinogen deaminase = hydroxymethylbilane synthase b3806 cyaA 1.23 0.82 0.91 1.16 1.34 1.20 0.99 1.23 adenylate cyclase b3807 cyaY 1.13 1.27 0.69 0.87 1.04 1.20 0.87 "orf, hypothetical protein" b3808 b3808 0.97 1.04 1.43 0.83 0.98 1.01 1.15 0.94 "orf, hypothetical protein" b3809 dapF 0.86 0.77 0.67 0.97 0.85 0.85 0.77 0.89 diaminopimelate epimerase b3810 yigA 1.03 0.81 1.00 0.91 1.02 0.92 0.98 "orf, hypothetical protein" b3811 xerC 0.88 0.69 0.46 1.01 0.93 0.97 0.68 0.97 "site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division" b3812 yigB 0.82 0.97 0.77 1.06 0.94 1.03 0.85 1.01 putative phosphatase b3813 uvrD 0.94 0.87 0.93 0.92 1.08 1.17 0.91 1.06 DNA-dependent ATPase I and helicase II b3814 b3814 1.07 1.55 1.09 1.04 0.85 0.96 1.24 0.95 "orf, hypothetical protein" b3815 yigE 1.01 1.23 1.14 1.12 0.92 1.04 1.13 1.03 "orf, hypothetical protein" b3816 corA 1.08 1.05 1.59 1.22 1.00 1.11 1.24 1.11 "Mg2+ transport, system I" b3817 yigF 1.00 1.08 1.05 0.92 0.91 1.04 0.96 "orf, hypothetical protein" b3818 yigG 0.95 1.52 0.85 1.03 0.90 0.88 1.11 0.94 "orf, hypothetical protein" b3819 rarD 0.97 1.30 0.96 0.82 0.88 0.89 1.08 0.86 "orf, hypothetical protein" b3820 yigI 0.99 1.13 1.08 0.91 0.83 1.02 1.07 0.92 "orf, hypothetical protein" b3821 pldA 0.99 0.98 0.81 0.95 1.03 1.14 0.93 1.04 outer membrane phospholipase A b3822 recQ 0.92 1.06 0.83 0.91 0.89 1.04 0.94 0.95 ATP-dependent DNA helicase b3823 yigJ 0.90 0.99 0.97 1.02 1.00 0.98 0.95 1.00 "orf, hypothetical protein" b3824 yigK 0.93 1.28 1.00 0.89 0.82 0.86 1.07 0.86 "orf, hypothetical protein" b3825 pldB 1.00 1.31 1.12 1.32 1.03 1.21 1.14 1.19 lysophospholipase L(2) b3826 yigL 1.01 1.19 1.69 1.11 0.85 1.02 1.30 0.99 "orf, hypothetical protein" b3827 yigM 0.84 0.89 0.97 0.90 0.76 0.94 0.90 0.87 "orf, hypothetical protein" b3828 metR 1.03 0.79 1.05 0.84 0.91 1.02 0.96 0.92 regulator for metE and metH b3829 metE 0.39 0.44 0.81 0.57 0.60 0.35 0.55 0.51 tetrahydropteroyltriglutamate methyltransferase b3830 ysgA 0.65 0.68 0.62 0.68 0.58 0.73 0.65 0.66 putative enzyme b3831 udp 1.05 1.13 0.80 1.43 1.24 1.26 0.99 1.31 uridine phosphorylase b3832 yigN 0.96 1.03 1.12 1.03 0.90 1.04 1.04 0.99 putative alpha helix chain b3833 ubiE 0.93 0.80 0.78 0.98 0.89 0.89 0.84 0.92 "2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone" b3834 yigP 0.86 0.74 1.01 0.90 1.11 0.80 1.01 "orf, hypothetical protein" b3835 yigR 0.88 0.83 0.78 0.91 1.02 0.94 0.83 0.96 "orf, hypothetical protein" b3836 b3836 1.04 1.11 0.88 0.93 1.00 1.08 0.94 "orf, hypothetical protein" b3837 b3837 0.86 0.82 0.93 0.87 0.94 1.02 0.87 0.94 putative histone b3838 b3838 0.81 0.89 1.01 0.97 0.99 0.93 0.90 0.96 "orf, hypothetical protein" b3839 yigU 0.91 0.92 1.08 0.85 0.92 0.97 0.89 "orf, hypothetical protein" b3840 yigW_1 1.01 1.08 0.96 1.04 0.79 0.93 1.02 0.92 "orf, hypothetical protein" b3841 yigW_2 3.19 0.99 0.76 0.96 0.92 1.02 1.65 0.97 "orf, hypothetical protein" b3842 rfaH 0.86 0.82 1.15 1.01 0.94 0.98 0.94 0.98 "transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin" b3843 yigC 0.91 0.75 0.79 0.88 0.90 0.83 0.86 putative oxidoreductase b3844 ubiB 0.90 0.75 0.90 1.14 1.01 1.02 0.85 1.06 ferrisiderophore reductase; flavin reductase (NADPH:flavin oxidoreductase) b3845 fadA 1.01 1.10 1.03 1.15 0.90 0.98 1.05 1.01 thiolase I; 3-ketoacyl-CoA thiolase; acetyl-CoA transferase b3846 fadB 0.93 0.91 1.05 0.99 1.05 0.92 1.03 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase b3847 pepQ 0.82 0.72 0.50 0.91 0.96 0.78 0.68 0.88 proline dipeptidase b3848 yigZ 0.85 0.68 0.82 1.20 0.92 1.19 0.78 1.10 "orf, hypothetical protein" b3849 trkH 2.13 0.91 0.74 1.13 0.93 0.89 1.26 0.98 "potassium uptake, requires TrkE" b3850 hemG 0.97 0.82 1.15 0.95 1.00 0.94 0.98 0.96 protoporphyrin oxidase b3856 mobB 1.09 1.26 1.39 0.93 0.98 1.01 1.25 0.97 molybdopterin-guanine dinucleotide biosynthesis protein B b3857 mobA 1.03 0.87 0.99 1.10 1.09 1.14 0.96 1.11 "molybdopterin ---> molybdopterin-guanine dinucleotide, protein Ar" b3858 yihD 0.92 1.08 0.84 0.92 0.92 0.95 "orf, hypothetical protein" b3859 yihE 0.93 0.82 0.92 1.04 0.96 1.00 0.89 1.00 "orf, hypothetical protein" b3860 dsbA 0.88 0.69 0.84 0.66 1.03 1.07 0.80 0.92 "protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction" b3861 yihF 0.97 1.57 1.23 1.03 1.06 0.89 1.26 0.99 putative GTP-binding protein b3862 yihG 0.95 1.35 1.30 1.04 0.88 1.06 1.20 0.99 putative endonuclease b3863 polA 0.92 0.83 0.52 0.93 0.98 0.89 0.76 0.93 "DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease" b3865 yihA 0.86 0.87 1.18 0.86 0.78 0.97 0.97 0.87 "orf, hypothetical protein" b3866 yihI 1.06 1.36 1.12 1.01 0.97 0.90 1.18 0.96 "orf, hypothetical protein" b3867 hemN 1.08 0.98 1.37 1.12 1.23 1.03 1.14 1.13 O2-independent coproporphyrinogen III oxidase b3868 glnG 1.42 1.57 2.08 1.71 1.18 1.43 1.69 1.44 "response regulator for gln (sensor glnL) (nitrogen regulator I, NRI)" b3869 glnL 1.49 2.19 2.13 1.85 1.89 1.39 1.94 1.71 "histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII)" b3870 glnA 2.38 2.38 2.22 2.91 4.11 2.07 2.33 3.03 glutamine synthetase b3871 yihK 0.72 0.47 0.68 0.71 0.84 0.69 0.62 0.75 putative GTP-binding factor b3872 yihL 1.41 1.15 1.05 0.93 1.14 1.28 1.04 putative transcriptional regulator b3873 yihM 1.08 1.16 0.80 0.88 1.05 1.00 1.01 0.98 "orf, hypothetical protein" b3874 yihN 1.10 0.99 0.93 0.98 1.10 0.97 putative resistance protein (transport) b3875 yshA 0.97 2.22 0.89 1.09 0.89 1.09 1.36 1.02 "orf, hypothetical protein" b3876 yihO 1.06 1.35 1.03 0.94 1.02 1.21 1.00 putative permease b3877 yihP 1.10 1.26 1.43 0.89 1.23 1.26 1.06 putative permease b3878 yihQ 1.08 1.20 1.12 1.08 0.77 1.09 1.13 0.98 putative glycosidase b3879 yihR 1.07 1.38 0.89 0.98 0.97 0.93 1.11 0.96 putative aldose-1-epimerase (EC 5.1.3.3) b3880 yihS 0.99 1.14 1.09 1.08 0.88 0.86 1.07 0.94 "orf, hypothetical protein" b3881 yihT 0.88 0.96 0.93 0.91 0.87 1.00 0.92 0.93 putative aldolase b3882 yihU 1.03 0.91 0.83 1.02 0.89 1.08 0.92 1.00 putative dehydrogenase b3883 yihV 0.93 0.97 0.85 1.01 0.97 0.78 0.92 0.92 putative kinase b3884 yihW 0.87 0.92 0.81 1.12 0.89 0.91 0.87 0.97 putative DEOR-type transcriptional regulator b3885 yihX 1.08 1.52 0.92 1.03 0.92 1.01 1.17 0.99 putative phosphatase b3886 rbn 1.02 1.11 1.01 1.18 1.09 1.03 1.05 1.10 tRNA processing exoribonuclease BN b3887 yihZ 0.89 1.04 0.76 1.07 1.11 0.87 0.90 1.02 "orf, hypothetical protein" b3888 yiiD 0.94 0.78 0.72 0.82 0.79 0.83 0.81 0.81 putative acetyltransferase (EC 2.3.1.18) b3889 yiiE 0.91 1.36 0.84 1.17 1.04 0.75 1.04 0.99 "orf, hypothetical protein" b3890 yiiF 0.91 2.78 0.86 1.02 0.98 0.96 1.52 0.99 "orf, hypothetical protein" b3891 fdhE 0.76 0.82 0.77 0.85 0.90 0.97 0.78 0.91 affects formate dehydrogenase-N b3892 fdoI 0.88 1.16 0.74 1.05 1.17 1.09 0.93 1.10 "formate dehydrogenase, cytochrome B556 (FDO) subunit" b3893 fdoH 0.89 0.82 0.85 0.93 0.81 0.87 0.85 0.87 "formate dehydrogenase-O, iron-sulfur subunit" b3894 fdoG 1.14 0.67 1.33 0.89 1.08 0.97 1.05 0.98 "formate dehydrogenase-O, major subunit" b3895 fdhD 1.06 1.20 1.22 1.08 0.87 1.23 1.16 1.06 affects formate dehydrogenase-N b3896 yiiG 0.98 1.20 1.02 0.78 0.93 1.09 0.91 "orf, hypothetical protein" b3897 frvR 1.01 1.04 0.75 1.20 0.99 1.15 0.93 1.11 putative frv operon regulatory protein b3898 frvX 0.92 0.88 0.75 0.94 1.02 0.90 0.85 0.95 frv operon protein b3899 frvB 1.10 1.07 0.86 1.17 1.04 1.20 1.01 1.14 "PTS system, fructose-like enzyme IIBC component" b3900 frvA 0.97 2.07 0.70 1.27 1.06 1.07 1.25 1.13 "PTS system, fructose-specific IIA component" b3901 yiiL 0.99 0.89 0.87 0.99 0.81 0.92 0.92 0.91 "orf, hypothetical protein" b3902 rhaD 1.08 0.99 0.88 1.25 0.99 1.21 0.98 1.15 rhamnulose-phosphate aldolase b3903 rhaA 1.12 1.06 0.88 1.23 1.03 1.14 1.02 1.13 L-rhamnose isomerase b3904 rhaB 1.11 1.34 0.92 1.12 0.91 1.34 1.12 1.12 rhamnulokinase b3905 rhaS 1.12 1.06 0.96 1.03 1.01 1.04 1.05 1.03 positive regulator for rhaBAD operon b3906 rhaR 1.03 1.38 1.03 1.02 1.16 1.07 1.15 1.08 positive regulator for rhaRS operon b3907 rhaT 1.05 1.19 0.88 1.17 0.98 1.22 1.04 1.12 rhamnose transport b3908 sodA 0.65 0.66 0.52 0.73 1.48 0.77 0.61 0.99 "superoxide dismutase, manganese" b3909 kdgT 1.28 1.32 1.08 1.13 0.99 1.10 1.23 1.07 2-keto-3-deoxy-D-gluconate transport system b3910 yiiM 1.11 0.87 1.28 1.06 0.77 0.96 1.09 0.93 "orf, hypothetical protein" b3911 cpxA 1.10 1.24 0.85 0.98 1.02 0.90 1.06 0.97 "probable sensor protein (histidine protein kinase), acting on arcA" b3912 cpxR 1.13 0.89 1.09 0.99 0.96 0.96 1.04 0.97 transcriptional regulator in 2-component system b3913 b3913 1.07 1.06 1.61 1.08 0.91 1.08 1.25 1.02 "orf, hypothetical protein" b3914 b3914 1.14 1.18 1.96 1.18 1.48 1.22 1.43 1.29 "orf, hypothetical protein" b3915 yiiP 1.00 1.06 1.12 0.98 1.00 1.19 1.06 1.06 putative transport system permease protein b3916 pfkA 0.90 0.84 0.99 1.15 1.06 1.06 0.91 1.09 6-phosphofructokinase I b3917 sbp 0.80 0.85 0.70 0.89 0.85 0.83 0.81 periplasmic sulfate-binding protein b3918 cdh 0.80 0.75 0.95 0.90 0.96 0.78 0.94 CDP-diacylglycerol phosphotidylhydrolase b3919 tpiA 0.94 1.47 0.91 0.78 1.28 1.21 0.99 triosephosphate isomerase b3920 yiiQ 0.93 0.91 0.81 0.97 0.99 0.88 0.98 "orf, hypothetical protein" b3921 yiiR 4.06 1.27 1.23 0.89 0.84 2.19 0.87 "orf, hypothetical protein" b3922 yiiS 1.37 1.08 1.15 0.81 0.82 0.85 1.20 0.83 "orf, hypothetical protein" b3923 yiiT 0.56 1.06 1.05 0.99 0.85 0.95 0.89 0.93 putative regulator b3924 fpr 0.96 0.71 0.93 1.21 0.98 0.84 1.04 ferredoxin-NADP reductase b3925 glpX 0.90 1.26 0.83 1.04 0.99 1.14 1.00 1.06 unknown function in glycerol metabolism b3926 glpK 1.02 0.80 0.75 1.21 0.92 1.20 0.86 1.11 glycerol kinase b3927 glpF 1.08 1.06 0.99 1.02 0.94 0.88 1.04 0.95 facilitated diffusion of glycerol b3928 yiiU 0.96 0.68 1.35 1.00 0.77 0.85 1.00 0.87 "orf, hypothetical protein" b3929 menG 1.31 1.69 1.72 1.00 1.12 1.45 1.57 1.19 "menaquinone biosynthesis, unknown" b3930 menA 1.13 1.06 0.97 0.91 1.10 1.10 1.05 1.04 "1,4-dihydroxy-2-naphthoate --> dimethylmenaquinone" b3931 hslU 0.85 0.86 0.91 0.86 1.01 0.90 0.87 0.92 "heat shock protein hslVU, ATPase subunit, homologous to chaperones" b3932 hslV 0.92 0.79 0.88 0.89 1.01 0.88 0.86 0.93 "heat shock protein hslVU, proteasome-related peptidase subunit" b3933 ftsN 1.02 0.86 0.96 0.96 0.90 0.83 0.95 0.90 essential cell division protein b3934 cytR 0.92 0.55 0.72 0.81 0.88 0.95 0.73 0.88 "regulator for deo operon, udp, cdd, tsx, nupC, and nupG" b3935 priA 1.00 1.22 0.78 0.94 1.14 1.07 1.00 1.05 primosomal protein N'(= factor Y)(putative helicase) b3936 rpmE 0.56 0.38 1.12 0.60 0.77 0.90 0.69 0.76 50S ribosomal subunit protein L31 b3937 yiiX 0.95 0.96 1.39 1.04 0.74 0.99 1.10 0.92 "orf, hypothetical protein" b3938 metJ 0.99 1.07 2.56 0.88 0.98 1.13 1.54 1.00 repressor of all met genes but metF b3939 metB 0.91 0.87 0.88 1.02 0.91 0.92 cystathionine gamma-synthase b3940 metL 0.88 0.88 0.84 0.82 0.86 0.88 0.84 aspartokinase II and homoserine dehydrogenase II b3941 metF 0.71 2.07 0.70 0.78 0.93 1.39 0.80 "5,10-methylenetetrahydrofolate reductase" b3942 katG 1.29 1.29 1.11 1.14 1.29 1.18 catalase; hydroperoxidase HPI(I) b3943 yijE 1.00 1.42 1.04 0.92 0.89 0.89 1.15 0.90 "orf, hypothetical protein" b3944 yijF 0.98 1.41 1.22 1.00 0.94 0.98 1.20 0.97 "orf, hypothetical protein" b3945 gldA 1.00 1.58 1.35 1.10 1.11 1.29 1.19 "glycerol dehydrogenase, (NAD)" b3946 talC 1.01 1.05 1.00 0.76 0.87 1.03 0.88 putative transaldolase b3947 ptsA 1.16 1.23 1.22 1.00 0.87 1.19 1.20 1.02 PEP-protein phosphotransferase system enzyme I b3948 yijI 1.04 1.00 0.85 0.92 0.97 0.94 0.96 0.94 "orf, hypothetical protein" b3949 frwC 1.35 1.16 1.02 0.96 1.06 1.11 1.18 1.04 "PTS system, fructose-like enzyme II component" b3950 frwB 1.12 0.94 0.98 1.18 1.00 1.01 1.01 1.06 PTS system fructose-like IIB component 1 b3951 pflD 1.09 0.96 0.94 0.94 1.08 1.03 0.99 formate acetyltransferase 2 b3952 pflC 1.11 0.83 0.94 0.88 1.13 0.97 0.98 probable pyruvate formate lyase activating enzyme 2 b3953 frwD 1.30 1.61 0.90 1.08 1.03 1.21 1.27 1.11 PTS system fructose-like IIB component 2 b3954 yijO 1.19 1.10 1.00 1.01 1.00 1.04 1.10 1.02 putative ARAC-type regulatory protein b3955 yijP 0.60 0.79 0.74 0.83 0.80 0.64 0.71 0.76 "orf, hypothetical protein" b3956 ppc 0.66 0.45 0.73 0.97 0.64 0.55 0.78 phosphoenolpyruvate carboxylase b3957 argE 0.81 0.91 1.03 0.86 0.92 0.99 0.92 0.92 acetylornithine deacetylase b3958 argC 0.66 0.50 1.59 0.73 0.81 0.82 0.92 0.79 N-acetyl-gamma-glutamylphosphate reductase b3959 argB 0.67 0.48 1.59 0.74 0.70 0.79 0.91 0.74 acetylglutamate kinase b3960 argH 0.52 0.75 1.08 0.61 0.67 0.72 0.78 0.67 argininosuccinate lyase b3961 oxyR 0.78 0.88 0.78 0.85 0.96 0.84 0.81 0.88 "activator, hydrogen peroxide-inducible genes" b3962 udhA 0.66 0.44 0.70 0.80 1.24 0.77 0.60 0.94 putative oxidoreductase b3963 yijC 1.15 1.21 0.95 0.88 0.94 0.96 1.10 0.93 "orf, hypothetical protein" b3964 yijD 0.82 1.29 1.33 0.95 0.97 1.00 1.15 0.97 "orf, hypothetical protein" b3965 trmA 1.03 0.82 1.41 0.78 0.85 0.85 1.09 0.83 tRNA (uracil-5-)-methyltransferase b3966 btuB 0.85 0.46 0.62 0.72 0.67 0.65 0.67 "outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23" b3967 murI 0.71 1.02 0.97 0.89 1.00 0.87 0.95 "glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan" b3972 murB 0.82 1.59 0.97 1.23 0.97 1.20 1.06 UDP-N-acetylenolpyruvoylglucosamine reductase b3973 birA 0.99 1.21 0.95 1.03 1.04 1.00 1.05 1.02 biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor b3974 coaA 1.06 0.82 1.05 0.93 0.91 0.91 0.98 0.92 pantothenate kinase b3975 b3975 1.04 1.14 1.43 0.99 0.86 0.89 1.20 0.91 "orf, hypothetical protein" b3980 tufB 0.63 0.63 0.47 0.74 0.88 0.69 0.58 0.77 protein chain elongation factor EF-Tu (duplicate of tufA) b3981 secE 0.72 0.93 0.78 0.92 0.95 0.83 0.88 preprotein translocase b3982 nusG 0.80 0.77 0.91 0.78 0.98 0.98 0.83 0.91 component in transcription antitermination b3983 rplK 0.64 0.52 0.58 0.55 0.49 0.55 0.58 0.53 50S ribosomal subunit protein L11 b3984 rplA 0.59 0.57 0.53 0.54 0.34 0.55 0.56 0.48 "50S ribosomal subunit protein L1, regulates synthesis of L1 and L11" b3985 rplJ 0.63 0.54 0.88 0.48 0.40 0.69 0.68 0.52 50S ribosomal subunit protein L10 b3986 rplL 1.90 0.52 0.89 1.02 0.88 0.90 1.10 0.93 50S ribosomal subunit protein L7/L12 b3987 rpoB 0.83 0.76 0.35 1.18 1.02 0.81 0.65 1.00 "RNA polymerase, beta subunit" b3988 rpoC 0.78 0.80 1.03 0.88 0.93 0.79 0.95 "RNA polymerase, beta prime subunit" b3989 htrC 1.12 0.94 1.32 0.95 1.00 0.99 1.13 0.98 heat shock protein htrC b3990 thiH 0.89 0.77 1.03 0.86 0.92 0.83 0.94 "thiamin biosynthesis, thiazole moiety" b3991 thiG 1.02 0.83 0.34 1.09 0.90 0.91 0.73 0.97 "thiamin biosynthesis, thiazole moiety" b3992 thiF 0.85 0.73 0.51 1.12 0.97 0.87 0.70 0.99 "thiamin biosynthesis, thiazole moiety" b3993 thiE 0.97 0.90 0.87 0.98 1.01 0.89 0.91 0.96 "thiamin biosynthesis, thiazole moiety" b3994 thiC 0.77 0.81 0.27 1.08 1.08 0.73 0.62 0.96 "thiamin biosynthesis, pyrimidine moiety" b3995 yjaE 1.16 1.08 1.06 1.22 1.04 1.26 1.10 1.17 putative transcriptional regulator b3996 yjaD 0.94 0.99 0.81 0.99 1.01 1.05 0.91 1.02 "orf, hypothetical protein" b3997 hemE 1.13 0.88 0.78 0.94 1.03 0.92 0.93 0.96 uroporphyrinogen decarboxylase b3998 nfi 0.95 0.86 1.02 1.15 1.02 1.06 0.94 1.08 endonuclease V (deoxyinosine 3'endoduclease) b3999 yjaG 0.94 0.94 1.04 1.12 0.99 1.09 0.97 1.07 "orf, hypothetical protein" b4000 hupA 1.48 1.24 1.20 0.70 1.13 2.01 1.31 1.28 DNA-binding protein HU-alpha (HU-2) b4001 yjaH 0.96 0.80 0.91 1.02 1.02 1.03 0.89 1.02 "orf, hypothetical protein" b4002 yjaI 0.92 1.57 1.35 1.08 0.90 0.55 1.28 0.84 "orf, hypothetical protein" b4003 hydH 1.02 1.13 0.94 1.02 0.94 1.03 1.03 1.00 "sensor kinase for HydG, hydrogenase 3 activity" b4004 hydG 0.93 1.13 1.00 0.98 0.99 0.93 1.02 0.97 response regulator of hydrogenase 3 activity (sensor HydH) b4005 purD 0.93 0.58 1.04 1.01 0.96 0.76 1.00 phosphoribosylglycinamide synthetase = GAR synthetase b4006 purH 0.75 0.79 0.40 0.88 1.04 0.73 0.65 0.88 phosphoribosylaminoimidazolecarboxamideformyltransferase = AICAR formyltransferase; IMP cyclohydrolase b4011 yjaA 0.97 1.38 0.91 1.15 0.98 1.00 1.09 1.04 "orf, hypothetical protein" b4012 yjaB 1.01 1.35 1.19 1.12 0.92 1.22 1.18 1.09 "orf, hypothetical protein" b4013 metA 1.09 0.84 2.50 0.84 0.91 1.00 1.48 0.92 homoserine transsuccinylase b4014 aceB 0.88 0.91 0.63 1.41 0.92 1.12 0.81 1.15 malate synthase A b4015 aceA 0.60 0.36 1.13 0.88 1.19 0.48 1.07 isocitrate lyase b4016 aceK 0.82 0.82 0.52 0.98 0.96 1.02 0.72 0.99 isocitrate dehydrogenase kinase/phosphatase b4017 arp 1.08 0.87 1.04 0.90 0.87 0.97 0.94 regulator of acetyl CoA synthetase b4018 iclR 0.82 0.89 1.06 0.91 0.89 0.93 0.92 0.91 repressor of aceBA operon b4019 metH 0.76 0.63 0.68 0.88 0.92 0.75 0.69 0.85 "B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF" b4020 yjbB 1.00 0.92 0.67 0.94 0.97 1.05 0.86 0.99 putative alpha helix protein b4021 pepE 0.98 0.90 0.73 0.87 1.00 0.96 0.87 0.94 "peptidase E, a dipeptidase where amino-terminal residue is aspartate" b4022 yjbC 0.98 0.87 1.00 0.93 0.99 1.18 0.95 1.03 "orf, hypothetical protein" b4023 yjbD 0.97 1.33 1.45 1.20 0.94 1.27 1.25 1.14 "orf, hypothetical protein" b4024 lysC 1.03 0.87 1.45 1.09 0.97 1.03 1.12 1.03 "aspartokinase III, lysine sensitive" b4025 pgi 1.12 1.22 1.26 1.38 1.19 1.17 1.28 glucosephosphate isomerase b4026 yjbE 1.07 1.53 1.05 0.99 0.87 0.98 1.22 0.95 "orf, hypothetical protein" b4027 yjbF 0.88 1.17 0.95 1.02 0.98 1.00 1.00 1.00 "orf, hypothetical protein" b4028 yjbG 1.02 1.02 0.92 0.90 1.00 0.96 0.99 0.95 "orf, hypothetical protein" b4029 yjbH 1.96 0.72 0.84 0.96 0.87 1.34 0.89 "orf, hypothetical protein" b4030 yjbA 1.03 2.45 3.23 0.89 0.88 0.64 2.24 0.80 "orf, hypothetical protein" b4031 xylE 1.33 2.94 1.11 1.05 2.14 1.08 xylose-proton symport b4032 malG 1.09 1.22 0.86 1.16 1.34 1.28 1.06 1.26 "part of maltose permease, inner membrane" b4033 malF 0.95 0.87 0.50 0.87 0.93 0.92 0.77 0.91 "part of maltose permease, periplasmic" b4034 malE 0.80 0.50 0.35 0.77 0.82 1.08 0.55 0.89 periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis b4035 malK 1.06 1.02 0.87 1.18 0.90 1.23 0.98 1.10 ATP-binding component of transport system for maltose b4036 lamB 0.85 0.58 0.62 0.74 0.82 0.95 0.68 0.84 phage lambda receptor protein; maltose high-affinity receptor b4037 malM 0.82 0.73 2.00 0.90 0.84 0.89 1.18 0.88 periplasmic protein of mal regulon b4038 yjbI 0.93 1.26 1.08 0.91 0.96 0.89 1.09 0.92 "orf, hypothetical protein" b4039 ubiC 0.90 0.89 0.91 0.95 0.99 1.00 0.90 0.98 chorismate lyase b4040 ubiA 0.92 0.76 1.18 0.88 0.99 1.06 0.95 0.98 4-hydroxybenzoate-octaprenyltransferase b4041 plsB 1.01 0.95 0.90 0.89 1.04 0.96 0.95 0.96 glycerol-3-phosphate acyltransferase b4042 dgkA 0.35 1.27 1.00 0.88 0.92 0.81 0.93 diacylglycerol kinase b4043 lexA 1.01 0.98 1.06 0.99 1.06 1.19 1.02 1.08 regulator for SOS(lexA) regulon b4044 dinF 1.16 1.02 1.03 0.88 1.01 0.99 1.07 0.96 DNA-damage-inducible protein F b4045 yjbJ 3.01 4.00 1.01 0.82 1.30 3.51 1.04 "orf, hypothetical protein" b4046 yjbK 1.09 1.00 0.94 0.91 1.07 1.05 0.97 putative regulator b4047 yjbL 0.93 0.96 1.00 0.87 1.02 0.95 0.96 "orf, hypothetical protein" b4048 yjbM 0.89 1.02 0.87 1.10 0.97 1.05 0.93 1.04 "orf, hypothetical protein" b4049 yjbN 0.89 0.83 0.98 0.94 1.02 1.01 0.90 0.99 "orf, hypothetical protein" b4050 yjbO 0.94 1.22 1.02 0.90 1.15 1.08 1.02 "orf, hypothetical protein" b4051 qor 1.23 1.35 1.10 1.40 1.20 1.41 1.23 1.34 quinone oxidoreductase b4052 dnaB 0.81 1.14 1.15 0.86 0.87 0.88 1.03 0.87 replicative DNA helicase; part of primosome b4053 alr 0.90 0.87 0.93 1.00 0.90 0.86 0.90 0.92 alanine racemase 1 b4054 tyrB 1.11 1.02 0.67 1.01 1.13 0.94 0.93 1.03 "tyrosine aminotransferase, tyrosine repressible" b4055 aphA 0.92 1.12 0.84 1.08 1.07 1.05 0.96 1.07 diadenosine tetraphosphatase b4056 yjbQ 1.49 2.03 1.49 1.64 1.75 1.75 1.67 1.71 "orf, hypothetical protein" b4057 yjbR 1.16 1.38 1.15 1.05 0.90 0.86 1.23 0.94 "orf, hypothetical protein" b4058 uvrA 1.25 1.06 0.99 0.98 1.17 1.07 1.10 1.07 excision nuclease subunit A b4059 ssb 0.94 0.97 1.09 0.80 0.85 1.12 1.00 0.92 ssDNA-binding protein b4060 yjcB 1.05 1.02 2.44 1.40 1.15 1.19 1.50 1.25 "orf, hypothetical protein" b4061 yjcC 1.41 1.72 1.12 1.08 1.00 1.57 1.07 "orf, hypothetical protein" b4062 soxS 0.84 1.04 0.88 1.03 1.06 1.14 0.92 1.08 regulation of superoxide response regulon b4063 soxR 1.02 1.33 1.09 1.13 0.97 1.13 1.15 1.08 redox-sensing activator of soxS b4064 yjcD 0.82 1.21 0.77 0.64 0.78 0.78 0.93 0.73 "orf, hypothetical protein" b4065 yjcE 1.02 1.26 1.25 0.91 0.96 1.00 1.18 0.96 "orf, hypothetical protein" b4066 yjcF 1.01 1.87 1.03 0.90 0.98 0.90 1.30 0.93 "orf, hypothetical protein" b4067 yjcG 1.09 1.01 0.86 0.92 0.92 1.05 0.90 putative transport protein b4068 yjcH 0.86 0.91 0.57 0.86 0.89 0.96 0.78 0.90 "orf, hypothetical protein" b4069 acs 0.92 0.43 0.69 0.82 0.80 0.68 0.77 acetyl-CoA synthetase b4070 nrfA 0.98 1.08 1.56 1.03 0.94 1.11 1.21 1.03 periplasmic cytochrome c(552): plays a role in nitrite reduction b4071 nrfB 0.93 1.22 0.95 1.11 0.99 1.12 1.03 1.07 formate-dependent nitrite reductase; a penta-haeme cytochrome c b4072 nrfC 1.04 1.19 1.05 1.15 0.81 1.29 1.09 1.08 formate-dependent nitrite reductase; Fe-S centers b4073 nrfD 0.97 1.42 1.00 1.01 1.05 1.03 1.13 1.03 formate-dependent nitrate reductase complex; transmembrane protein b4074 nrfE 1.05 1.02 1.05 0.99 0.96 1.17 1.04 1.04 formate-dependent nitrite reductase; possible assembly function b4075 nrfF 0.96 1.47 0.83 0.99 0.97 1.02 1.09 0.99 part of formate-dependent nitrite reductase complex b4076 nrfG 1.45 1.02 1.01 1.08 1.08 1.24 1.06 part of formate-dependent nitrite reductase complex b4077 gltP 0.89 0.95 0.83 0.90 0.94 0.94 0.89 0.93 glutamate-aspartate symport protein b4078 yjcO 0.97 1.01 1.00 0.98 0.88 0.97 0.99 0.94 "orf, hypothetical protein" b4079 fdhF 0.85 0.87 0.92 0.89 0.85 0.86 0.89 selenopolypeptide subunit of formate dehydrogenase H b4080 yjcP 1.02 1.14 0.91 0.79 0.91 0.98 1.02 0.89 putative enzyme b4081 yjcQ 1.08 1.16 0.94 0.89 0.98 1.12 0.94 putative enzyme b4082 yjcR 1.05 1.02 1.01 1.02 0.89 0.88 1.03 0.93 putative membrane protein b4083 yjcS 1.04 1.02 0.97 0.86 1.12 1.03 0.98 "orf, hypothetical protein" b4084 yjcT 1.19 0.96 0.94 1.19 1.00 1.08 1.04 putative NAGC-like transcriptional regulator b4085 yjcU 1.41 1.18 0.99 0.84 0.93 0.93 1.19 0.90 putative epimerase b4086 yjcV 1.15 0.94 0.98 1.05 0.98 1.10 1.02 1.04 putative transport system permease protein b4087 yjcW 1.05 1.35 0.90 1.12 0.96 1.11 1.10 1.06 putative ATP-binding component of a transport system b4088 yjcX 1.03 1.03 1.06 1.13 0.80 1.24 1.04 1.06 putative LACI-type transcriptional regulator b4089 rpiR 0.95 1.05 0.88 0.87 0.95 0.93 transcriptional repressor of rpiB expression b4090 rpiB 1.16 1.14 1.01 1.04 1.00 1.10 1.10 1.05 ribose 5-phosphate isomerase B b4091 phnQ 0.97 1.38 1.09 1.01 0.94 1.06 1.15 1.00 "orf, hypothetical protein" b4092 phnP 1.16 1.07 1.18 1.09 0.90 1.08 1.14 1.02 phosphonate metabolism b4093 phnO 1.24 1.08 1.06 0.97 1.05 1.16 1.03 "putative regulator, phn operon" b4094 phnN 0.97 1.28 1.12 1.01 0.93 0.99 1.12 0.98 ATP-binding component of phosphonate transport b4095 phnM 0.94 1.15 1.01 0.86 0.86 0.90 1.03 0.87 phosphonate metabolism b4096 phnL 0.83 1.72 1.47 0.90 0.85 0.74 1.34 0.83 ATP-binding component of phosphonate transport b4097 phnK 1.19 1.11 0.89 1.03 0.96 1.15 0.96 ATP-binding component of phosphonate transport b4098 phnJ 1.00 1.36 0.93 1.10 0.92 1.12 1.10 1.05 phosphonate metabolism b4099 phnI 0.87 1.12 1.09 0.89 1.08 1.00 1.02 phosphonate metabolism b4100 phnH 0.98 1.37 1.06 1.30 0.80 1.07 1.14 1.06 phosphonate metabolism b4101 phnG 1.01 1.64 0.85 1.17 0.81 1.18 1.17 1.05 phosphonate metabolism b4102 phnF 0.94 1.34 0.90 1.18 0.94 0.96 1.06 1.03 putative transcriptional regulator b4103 b4103 0.97 1.40 1.22 1.05 0.82 1.08 1.20 0.98 "orf, hypothetical protein" b4104 phnE 1.05 1.11 1.01 1.13 1.01 1.19 1.06 1.11 membrane channel protein component of Pn transporter b4105 phnD 1.06 0.87 1.28 1.05 0.89 1.11 1.07 1.02 periplasmic binding protein component of Pn transporter b4106 phnC 1.02 1.28 1.18 1.10 1.06 1.18 1.16 1.11 ATP-binding component of phosphonate transport b4107 phnB 1.00 1.75 1.85 1.46 1.13 1.39 1.53 1.33 "orf, hypothetical protein" b4108 phnA 0.79 0.92 1.03 0.99 1.14 1.02 0.91 1.05 "orf, hypothetical protein" b4109 yjdA 0.89 1.11 0.78 0.94 0.79 0.99 0.93 0.91 putative vimentin b4110 yjcZ 0.99 0.93 1.09 1.18 0.92 1.08 1.00 1.06 "orf, hypothetical protein" b4111 proP 0.92 0.78 0.85 1.24 1.07 1.28 0.85 1.20 low-affinity transport system; proline permease II b4112 basS 0.99 1.05 1.00 1.11 1.07 1.17 1.01 1.12 sensor protein for basR b4113 basR 0.98 1.03 0.84 1.14 1.02 0.95 0.95 1.04 "transcriptional regulatory protein, member of 2-component regulatory system," b4114 yjdB 1.14 1.09 1.19 1.11 1.00 0.98 1.14 1.03 "orf, hypothetical protein" b4115 yjdE 1.00 0.95 0.94 0.92 1.08 0.98 0.98 "putative amino acid/amine transport protein, cryptic" b4116 adiY 1.03 1.18 1.15 1.08 1.04 1.18 1.12 1.10 putative ARAC-type regulatory protein b4117 adiA 0.93 1.46 1.64 0.94 0.96 0.91 1.34 0.94 biodegradative arginine decarboxylase b4118 melR 0.82 1.00 0.97 0.94 0.94 0.91 0.95 regulator of melibiose operon b4119 melA 1.10 1.35 1.28 1.09 1.01 1.27 1.24 1.12 alpha-galactosidase b4120 melB 1.13 1.37 0.83 1.02 1.11 1.25 0.99 melibiose permease II b4121 yjdF 1.01 1.35 0.95 1.09 0.96 1.14 1.10 1.06 "orf, hypothetical protein" b4122 fumB 0.83 0.86 1.10 0.81 0.76 0.94 0.93 0.84 fumarase B= fumarate hydratase Class I; anaerobic isozyme b4123 dcuB 1.10 0.68 1.09 0.99 1.00 0.87 0.96 0.95 anaerobic dicarboxylate transport b4124 yjdG 0.89 0.93 0.94 1.09 0.83 1.00 0.92 0.97 putative 2-component transcriptional regulator b4125 yjdH 1.02 0.91 0.96 0.97 1.07 1.03 0.96 1.02 putative 2-component sensor protein b4126 yjdI 1.04 1.54 1.82 1.48 1.14 1.45 1.47 1.36 "orf, hypothetical protein" b4127 yjdJ 1.17 2.01 2.00 1.30 1.35 1.19 1.73 1.28 "orf, hypothetical protein" b4128 yjdK 0.99 1.04 0.95 0.84 0.86 1.02 0.88 "orf, hypothetical protein" b4129 lysU 0.94 0.75 0.89 0.82 0.92 0.85 0.88 "lysine tRNA synthetase, inducible; heat shock protein" b4130 yjdL 0.96 1.21 0.96 1.04 0.81 0.99 1.04 0.95 putative peptide transporter b4131 cadA 0.95 1.14 1.04 0.89 0.88 0.91 1.04 0.89 lysine decarboxylase 1 b4132 cadB 1.12 1.84 0.57 0.94 0.98 1.07 1.18 1.00 transport of lysine/cadaverine b4133 cadC 1.02 1.51 1.56 1.10 1.06 0.99 1.36 1.05 transcriptional activator of cad operon b4135 yjdC 1.43 1.45 1.45 1.48 1.60 1.40 1.44 1.49 "orf, hypothetical protein" b4136 dsbD 1.00 0.98 0.88 1.09 0.73 1.03 0.95 0.95 thiol:disulfide interchange protein; copper tolerance b4137 cutA 1.12 1.04 1.02 1.17 1.05 0.91 1.06 1.04 divalent cation tolerance protein; cytochrome c biogenesis b4138 dcuA 0.74 0.84 0.85 1.00 0.97 0.79 0.94 anaerobic dicarboxylate transport b4139 aspA 0.93 1.01 0.99 0.57 0.67 0.89 0.98 0.71 aspartate ammonia-lyase (aspartase) b4140 b4140 0.84 1.33 1.32 0.85 0.86 0.98 1.16 0.90 "orf, hypothetical protein" b4141 yjeH 0.99 0.89 1.03 0.87 0.98 0.99 0.97 0.95 putative transport b4142 mopB 0.82 0.56 0.97 0.70 0.69 0.70 0.78 0.70 "GroES, 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity" b4143 mopA 0.54 0.55 0.90 0.69 0.65 0.59 0.66 0.64 "GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein" b4144 yjeI 1.15 1.00 1.10 0.89 1.00 0.81 1.08 0.90 "orf, hypothetical protein" b4145 yjeJ 0.90 1.11 0.96 0.81 0.91 1.05 0.99 0.92 "orf, hypothetical protein" b4146 yjeK 0.98 0.79 1.06 0.95 0.97 0.93 0.94 0.95 "orf, hypothetical protein" b4147 efp 0.70 0.72 2.13 0.70 0.94 1.03 1.18 0.89 elongation factor P (EF-P) b4148 sugE 1.02 1.23 1.75 1.16 1.09 1.19 1.33 1.15 "suppresses groEL, may be chaperone" b4149 blc 1.00 1.46 1.28 1.23 1.24 1.14 1.25 1.20 outer membrane lipoprotein (lipocalin) b4150 ampC 0.96 1.04 1.04 0.98 1.01 1.02 1.01 1.00 beta-lactamase; penicillin resistance b4151 frdD 0.91 1.06 0.98 0.93 0.92 0.99 0.94 "fumarate reductase, anaerobic, membrane anchor polypeptide" b4152 frdC 0.94 0.86 1.00 0.94 0.83 0.91 0.93 0.89 "fumarate reductase, anaerobic, membrane anchor polypeptide" b4153 frdB 0.84 0.79 1.23 0.96 0.91 0.95 0.95 0.94 "fumarate reductase, anaerobic, iron-sulfur protein subunit" b4154 frdA 1.06 1.41 1.09 0.86 1.18 1.23 1.04 "fumarate reductase, anaerobic, flavoprotein subunit" b4155 yjeA 0.79 1.05 0.80 0.84 0.88 0.92 0.84 putative lysyl-tRNA synthetase b4156 yjeM 0.91 1.18 1.03 1.01 1.10 0.94 1.04 1.02 putative transport b4157 yjeN 0.96 1.04 0.88 0.95 0.85 0.94 0.96 0.91 "orf, hypothetical protein" b4158 yjeO 0.99 1.24 0.81 1.09 1.01 1.02 1.01 1.04 "orf, hypothetical protein" b4159 yjeP 1.15 0.86 0.97 0.88 0.97 1.06 0.99 0.97 putative periplasmic binding protein b4160 psd 1.03 0.79 0.96 1.02 0.88 0.91 0.95 phosphatidylserine decarboxylase; phospholipid synthesis b4161 yjeQ 0.84 0.86 1.06 0.92 0.91 0.93 0.92 0.92 "orf, hypothetical protein" b4162 yjeR 0.87 0.90 1.27 0.90 1.00 1.10 1.01 1.00 "orf, hypothetical protein" b4166 yjeS 1.16 1.42 1.33 1.18 1.24 1.22 1.30 1.21 "orf, hypothetical protein" b4167 yjeF 1.16 1.16 1.09 1.35 1.23 1.43 1.14 1.34 "orf, hypothetical protein" b4168 yjeE 0.96 0.91 0.87 1.12 0.92 1.12 0.91 1.05 "orf, hypothetical protein" b4169 amiB 1.27 1.09 1.61 1.10 1.16 1.25 1.32 1.17 N-acetylmuramoyl-l-alanine amidase II; a murein hydrolase b4170 mutL 1.02 0.90 1.18 0.97 1.03 1.12 1.03 1.04 enzyme in methyl-directed mismatch repair b4171 miaA 1.08 1.15 1.15 1.04 1.06 1.22 1.13 1.11 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase b4172 hfq 1.18 0.94 0.99 1.06 1.21 1.27 1.04 1.18 "host factor I for bacteriophage Q beta replication, a growth-related protein" b4173 hflX 1.01 0.87 0.78 1.21 1.42 1.12 0.89 1.25 GTP - binding subunit of protease specific for phage lambda cII repressor b4174 hflK 0.83 0.80 0.68 1.01 0.97 1.01 0.77 1.00 protease specific for phage lambda cII repressor b4175 hflC 0.93 0.90 0.82 0.98 1.08 1.16 0.88 1.07 protease specific for phage lambda cII repressor b4176 yjeT 0.97 1.26 0.91 1.10 0.93 1.13 1.05 1.05 "orf, hypothetical protein" b4177 purA 0.63 0.89 0.74 0.87 0.73 0.76 0.78 adenylosuccinate synthetase b4178 yjeB 1.10 0.76 0.90 1.16 1.01 0.93 1.02 "orf, hypothetical protein" b4179 vacB 1.04 0.97 0.70 1.10 1.10 0.95 0.90 1.05 putative enzyme b4180 yjfH 0.95 1.00 0.90 0.82 0.88 0.93 0.95 0.88 "orf, hypothetical protein" b4181 yjfI 1.52 0.94 0.97 0.92 1.52 0.94 "orf, hypothetical protein" b4182 yjfJ 1.01 0.87 1.02 1.06 0.85 1.01 0.97 0.97 putative alpha helical protein b4183 yjfK 1.20 1.15 0.89 0.90 0.90 0.86 1.08 0.89 "orf, hypothetical protein" b4184 yjfL 0.91 1.38 1.14 0.92 0.91 0.89 1.14 0.91 "orf, hypothetical protein" b4185 yjfM 0.96 0.93 1.02 0.99 0.93 0.94 0.97 0.95 "orf, hypothetical protein" b4186 yjfC 1.21 1.00 0.86 0.84 0.95 1.11 0.88 putative synthetase/amidase b4187 aidB 3.55 3.56 5.88 1.86 1.43 1.53 4.33 1.61 putative acyl coenzyme A dehydrogenase b4188 yjfN 0.94 1.64 1.00 0.93 1.05 1.29 0.99 "orf, hypothetical protein" b4189 yjfO 0.96 1.13 1.39 1.12 1.02 1.11 1.16 1.08 "orf, hypothetical protein" b4190 yjfP 1.00 0.85 1.14 1.11 1.26 1.13 1.00 1.17 "orf, hypothetical protein" b4191 yjfQ 1.03 0.95 0.93 1.05 0.96 1.09 0.97 1.03 putative DEOR-type transcriptional regulator b4192 yjfR 0.98 0.96 1.01 1.07 1.24 1.08 0.98 1.13 "orf, hypothetical protein" b4193 sgaT 1.04 1.11 1.08 0.99 0.82 1.22 1.08 1.01 "orf, hypothetical protein" b4194 sgaB 0.97 1.32 0.81 1.12 0.97 1.04 1.03 1.04 "orf, hypothetical protein" b4195 ptxA 0.95 1.10 0.89 1.01 1.08 1.13 0.98 1.07 putative PTS system enzyme II A component b4196 sgaH 1.00 0.99 0.81 1.06 0.90 1.19 0.93 1.05 probable hexulose-6-phosphate synthase b4197 sgaU 0.95 1.25 0.92 1.03 0.84 1.05 1.04 0.97 putative hexulose-6-phosphate isomerase b4198 sgaE 1.13 1.27 1.15 1.11 1.05 1.26 1.18 1.14 putative epimerase/aldolase b4199 yjfY 1.72 2.00 1.07 0.91 1.86 0.99 "orf, hypothetical protein" b4200 rpsF 0.52 0.52 0.51 0.60 0.46 0.66 0.52 0.57 30S ribosomal subunit protein S6 b4201 priB 0.57 0.47 0.47 0.61 0.59 0.64 0.50 0.61 primosomal replication protein N b4202 rpsR 0.49 0.48 0.50 0.64 0.61 0.63 0.49 0.63 30S ribosomal subunit protein S18 b4203 rplI 0.57 0.73 0.71 0.63 0.82 0.65 0.72 50S ribosomal subunit protein L9 b4204 yjfZ 0.97 0.76 1.05 0.87 0.79 0.98 0.93 0.88 "orf, hypothetical protein" b4205 ytfA 1.02 0.95 0.93 0.94 0.87 0.99 0.91 "orf, hypothetical protein" b4206 ytfB 1.09 1.12 1.00 0.88 1.37 1.03 1.07 1.09 "orf, hypothetical protein" b4207 fklB 1.09 1.12 1.79 0.98 1.34 1.08 1.33 1.13 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) b4208 cycA 2.18 2.45 4.76 1.72 1.16 1.83 3.13 1.57 "transport of D-alanine, D-serine, and glycine" b4209 ytfE 1.46 0.90 0.88 1.09 1.46 0.96 "orf, hypothetical protein" b4210 ytfF 1.34 1.14 1.10 0.91 0.97 1.02 1.19 0.97 putative transmembrane subunit b4211 ytfG 0.91 1.12 0.90 0.91 1.03 1.01 0.98 0.98 putative oxidoreductase b4212 ytfH 1.00 1.12 1.23 0.98 0.98 0.95 1.12 0.97 "orf, hypothetical protein" b4213 cpdB 0.95 0.94 0.85 1.03 0.96 1.07 0.91 1.02 2':3'-cyclic-nucleotide 2'-phosphodiesterase b4214 cysQ 1.29 1.82 1.12 0.93 1.34 1.55 1.13 affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis b4215 ytfI 0.72 1.03 0.91 0.92 0.92 0.88 0.92 "orf, hypothetical protein" b4216 ytfJ 0.89 0.83 1.43 1.05 0.99 1.08 1.05 1.04 "orf, hypothetical protein" b4217 ytfK 1.99 3.33 1.27 1.21 1.24 1.91 2.20 1.45 "orf, hypothetical protein" b4218 ytfL 0.95 1.15 1.30 1.12 0.88 1.01 1.13 1.00 putative transport protein b4219 msrA 0.97 1.18 0.92 1.28 1.02 1.12 1.02 1.14 peptide methionine sulfoxide reductase b4220 ytfM 1.00 0.83 0.82 0.98 1.09 1.00 0.88 1.02 "orf, hypothetical protein" b4221 ytfN 0.98 0.89 0.91 0.95 0.93 1.23 0.93 1.04 "orf, hypothetical protein" b4222 ytfP 0.93 0.80 1.67 0.90 0.85 1.14 1.13 0.96 "orf, hypothetical protein" b4223 yjfA 0.88 0.86 1.59 0.95 0.86 1.27 1.11 1.03 "orf, hypothetical protein" b4224 chpS 0.90 0.86 0.96 1.02 1.00 1.13 0.91 1.05 "suppressor of inhibitory function of ChpB, PemI-like, autoregulated" b4225 chpB 0.96 1.08 0.85 1.09 0.96 1.04 0.96 1.03 "probable growth inhibitor, PemK-like, autoregulated" b4226 ppa 0.73 0.70 1.67 0.72 0.88 0.86 1.03 0.82 inorganic pyrophosphatase b4227 ytfQ 1.08 0.78 1.06 0.92 0.95 0.93 0.98 putative LACI-type transcriptional regulator b4228 ytfR 0.89 0.83 0.95 0.82 0.97 0.86 0.91 putative ATP-binding component of a transport system b4229 ytfS 1.06 0.80 1.04 0.93 0.99 0.93 0.99 putative ATP-binding component of a transport system b4230 ytfT 0.96 1.50 0.91 0.97 0.82 0.98 1.12 0.92 putative transport system permease protein b4231 yjfF 1.31 0.73 1.07 0.88 1.00 1.02 0.98 putative transport system permease protein b4232 fbp 0.82 0.91 0.88 0.81 1.10 0.97 0.87 0.96 fructose-bisphosphatase b4233 yjfG 1.09 0.72 1.09 0.93 1.09 0.91 0.97 0.98 putative ligase b4234 yjgA 1.25 1.16 2.13 0.89 0.99 1.12 1.51 1.00 putative alpha helix protein b4235 pmbA 1.16 1.32 1.28 1.05 0.92 1.07 1.25 1.01 "maturation of antibiotic MccB17, see tld genes" b4236 cybC 0.96 1.08 1.35 1.25 1.06 1.34 1.13 1.22 cytochrome b(562) b4237 nrdG 1.10 1.92 1.01 0.87 0.96 1.51 0.95 anaerobic ribonucleotide reductase activating protein b4238 nrdD 1.14 1.23 1.22 1.17 1.11 1.13 1.20 1.14 anaerobic ribonucleoside-triphosphate reductase b4239 treC 1.15 0.91 0.81 1.11 0.89 1.13 0.96 1.04 trehalase 6-P hydrolase b4240 treB 0.93 0.72 0.97 0.94 0.83 0.96 "PTS system enzyme II, trehalose specific" b4241 treR 1.02 1.34 1.28 0.98 1.21 1.03 1.21 1.07 "repressor of treA,B,C" b4242 mgtA 0.89 0.65 1.11 0.66 0.86 0.76 0.88 0.76 "Mg2+ transport ATPase, P-type 1" b4243 yjgF 0.52 0.31 0.95 0.84 0.96 0.93 0.59 0.91 "orf, hypothetical protein" b4244 pyrI 0.29 0.17 1.14 0.88 0.90 0.97 0.53 0.92 "aspartate carbamoyltransferase, regulatory subunit" b4245 pyrB 0.20 0.73 0.93 0.90 0.86 0.46 0.90 "aspartate carbamoyltransferase, catalytic subunit" b4246 pyrL 0.99 0.97 1.06 0.74 1.08 1.13 1.01 0.98 pyrBI operon leader peptide b4247 yjgG 1.12 1.09 0.94 0.91 1.10 0.93 "orf, hypothetical protein" b4248 yjgH 1.23 1.16 1.09 1.08 1.23 1.14 1.16 1.15 "orf, hypothetical protein" b4249 yjgI 1.10 1.33 0.87 0.96 0.91 1.06 1.10 0.98 putative oxidoreductase b4250 b4250 0.96 0.92 0.81 1.09 0.84 0.89 0.90 0.94 "orf, hypothetical protein" b4251 yjgJ 1.12 1.36 1.16 1.07 1.02 1.04 1.21 1.04 "orf, hypothetical protein" b4252 yjgK 0.93 1.05 1.00 0.98 0.84 0.99 0.99 0.94 "orf, hypothetical protein" b4253 yjgL 1.17 0.94 0.96 1.07 1.04 1.06 1.02 "orf, hypothetical protein" b4254 argI 0.68 0.54 1.59 0.87 0.89 1.05 0.94 0.94 ornithine carbamoyltransferase 1 b4255 yjgD 0.92 0.80 1.96 0.80 0.90 0.94 1.23 0.88 "orf, hypothetical protein" b4256 b4256 1.05 1.41 1.20 0.90 1.02 1.08 1.22 1.00 "orf, hypothetical protein" b4257 yjgN 1.12 1.14 0.92 1.04 1.13 0.92 1.06 1.03 "orf, hypothetical protein" b4258 valS 0.74 0.58 0.58 0.75 0.87 0.82 0.63 0.81 valine tRNA synthetase b4259 holC 0.83 0.71 0.63 1.07 0.97 0.88 0.72 0.97 "DNA polymerase III, chi subunit" b4260 pepA 0.90 0.75 0.98 1.01 0.90 0.83 0.96 aminopeptidase A/I b4261 yjgP 0.98 0.88 1.15 0.93 1.03 0.92 1.00 0.96 "orf, hypothetical protein" b4262 yjgQ 1.01 0.94 1.30 0.95 1.06 1.28 1.08 1.10 "orf, hypothetical protein" b4263 yjgR 1.33 0.99 1.59 1.18 1.01 1.16 1.30 1.12 "orf, hypothetical protein" b4264 idnR 1.07 1.11 0.93 1.14 1.00 1.16 1.04 1.10 L-idonate transcriptional regulator b4265 idnT 1.13 0.90 0.89 1.12 0.99 1.19 0.97 1.10 L-idonate transporter b4266 idnO 1.00 1.22 0.84 1.19 0.92 1.10 1.02 1.07 5-keto-D-gluconate 5-reductase b4267 idnD 0.97 1.21 0.90 1.02 0.79 1.13 1.03 0.98 L-idonate dehydrogenase b4268 idnK 1.10 1.19 0.91 1.08 0.99 1.09 1.07 1.05 "gluconate kinase, thermosensitive glucokinase" b4269 yjgB 1.10 1.45 1.24 0.98 1.31 1.28 1.18 putative oxidoreductase b4271 intB 1.75 1.02 0.92 1.03 1.75 0.99 prophage P4 integrase b4272 yi21_6 1.09 0.87 1.11 1.01 1.00 0.98 1.04 IS2 hypothetical protein b4273 yi22_6 1.00 0.98 1.03 1.09 1.01 1.12 1.00 1.07 IS2 hypothetical protein b4274 yjgW 1.00 1.15 1.05 1.02 1.01 1.00 1.07 1.01 "orf, hypothetical protein" b4275 yjgX 1.16 1.01 1.25 1.05 1.09 1.10 1.14 1.08 "orf, hypothetical protein" b4276 yjgY 0.95 1.09 1.14 1.00 0.94 1.06 1.06 1.00 "orf, hypothetical protein" b4277 yjgZ 0.99 1.20 1.06 1.09 0.92 1.06 1.08 1.02 "orf, hypothetical protein" b4278 yi41 1.21 0.98 1.03 0.92 1.13 1.10 1.03 IS4 hypothetical protein b4279 yjhB 1.09 1.16 0.96 1.06 0.91 0.91 1.07 0.96 putative transport protein b4280 yjhC 0.90 0.84 0.92 0.86 0.90 0.87 putative dehydrogenase b4281 yjhD 1.15 1.67 0.88 1.02 1.03 1.09 1.23 1.05 "orf, hypothetical protein" b4282 yjhE 0.99 1.14 0.89 0.97 0.84 0.90 1.01 0.90 "orf, hypothetical protein" b4283 yi91b 1.12 1.11 1.08 0.84 1.05 1.04 1.10 0.98 IS911 hypothetical protein (IS911B) b4284 tra8_3 1.16 0.92 0.91 1.01 1.05 1.03 1.00 1.03 IS30 transposase b4285 b4285 1.01 1.01 0.93 1.07 0.97 0.91 0.98 0.98 putative transposase b4286 b4286 1.01 1.23 0.94 1.08 0.88 0.94 1.06 0.97 "orf, hypothetical protein" b4287 fecE 0.91 1.18 0.91 1.04 0.83 0.89 1.00 0.92 ATP-binding component of citrate-dependent iron(III) transport protein b4288 fecD 1.18 1.17 0.86 0.97 0.92 1.00 1.07 0.96 "citrate-dependent iron transport, membrane-bound protein" b4289 fecC 1.00 1.09 0.85 1.01 0.88 1.05 0.98 0.98 "citrate-dependent iron(III) transport protein, cytosolic" b4290 fecB 1.14 1.24 0.85 1.04 1.06 1.11 1.08 1.07 "citrate-dependent iron transport, periplasmic protein" b4291 fecA 1.31 1.10 0.44 1.10 1.08 1.10 0.95 1.09 "outer membrane receptor; citrate-dependent iron transport, outer membrane receptor" b4292 fecR 1.01 0.96 0.27 1.10 0.97 1.07 0.75 1.05 "regulator for fec operon, periplasmic" b4293 fecI 1.05 0.97 0.47 0.96 1.03 0.97 0.83 0.99 probable RNA polymerase sigma factor b4294 insA_7 1.01 0.87 0.93 0.90 1.00 1.05 0.94 0.98 IS1 protein InsA b4295 yjhU 1.12 0.99 1.20 0.89 0.86 0.99 1.10 0.91 "orf, hypothetical protein" b4296 yjhF 1.23 1.24 1.15 1.22 0.91 1.36 1.21 1.16 putative transport system permease b4297 yjhG 0.91 1.26 0.98 0.94 0.87 1.41 1.05 1.07 putative dehydratase b4298 yjhH 1.09 1.05 0.90 1.04 0.91 0.89 1.01 0.95 putative lyase/synthase b4299 yjhI 1.02 1.65 0.77 1.12 0.92 1.11 1.15 1.05 putative regulator b4300 sgcR 0.90 1.01 0.98 1.01 0.99 1.12 0.96 1.04 putative DEOR-type transcriptional regulator b4301 sgcE 1.15 1.02 0.89 1.00 0.98 1.07 1.02 1.02 putative epimerase b4302 sgcA 1.03 1.01 0.95 1.08 0.99 1.09 1.00 1.05 putative PTS system enzyme II A component b4303 sgcQ 0.97 1.19 1.19 1.07 0.94 1.07 1.12 1.03 putative nucleoside triphosphatase b4304 sgcC 2.08 1.03 1.02 1.10 1.00 1.12 1.38 1.07 putative PTS system enzyme IIC component b4305 sgcX 1.04 1.07 1.02 1.03 0.88 1.00 1.04 0.97 putative lyase/synthase b4306 yjhP 1.14 0.95 1.09 0.83 1.05 1.05 0.99 putative methyltransferase b4307 yjhQ 0.97 1.11 0.80 0.94 1.01 1.07 0.96 1.01 "orf, hypothetical protein" b4308 yjhR 0.94 1.21 1.14 0.94 0.93 1.01 1.10 0.96 putative frameshift suppressor b4309 yjhS 1.02 0.88 0.87 1.05 1.03 1.07 0.92 1.05 "orf, hypothetical protein" b4310 yjhT 1.11 1.55 1.18 1.33 1.14 1.23 1.28 1.23 "orf, hypothetical protein" b4311 yjhA 0.91 1.08 1.11 1.05 1.04 1.02 1.03 1.04 "orf, hypothetical protein" b4312 fimB 0.85 0.80 0.77 0.94 0.90 0.99 0.81 0.94 recombinase involved in phase variation; regulator for fimA b4313 fimE 1.09 1.34 1.20 0.99 1.16 0.90 1.21 1.02 recombinase involved in phase variation; regulator for fimA b4314 fimA 0.69 0.60 0.35 1.05 0.84 1.14 0.55 1.01 major type 1 subunit fimbrin (pilin) b4315 fimI 0.87 0.88 0.61 1.13 0.98 1.06 0.79 1.06 fimbrial protein b4316 fimC 0.86 1.02 0.53 1.05 0.91 1.00 0.80 0.99 "periplasmic chaperone, required for type 1 fimbriae" b4317 fimD 0.99 1.09 0.49 1.23 1.15 1.15 0.86 1.18 "outer membrane protein; export and assembly of type 1 fimbriae, interrupted" b4318 fimF 0.94 1.09 0.99 1.12 0.94 1.15 1.01 1.07 fimbrial morphology b4319 fimG 1.04 1.11 0.72 1.21 0.88 1.11 0.96 1.07 fimbrial morphology b4320 fimH 0.99 1.27 0.81 1.12 1.00 1.19 1.02 1.10 "minor fimbrial subunit, D-mannose specific adhesin" b4321 gntP 1.06 1.13 0.97 1.14 0.94 0.97 1.05 1.02 gluconate transport system permease 3 b4322 uxuA 1.02 1.17 0.42 1.01 0.86 1.11 0.87 0.99 mannonate hydrolase b4323 uxuB 0.97 1.22 0.63 1.04 0.85 1.24 0.94 1.04 D-mannonate oxidoreductase b4324 uxuR 1.17 1.20 0.85 0.94 1.04 1.29 1.07 1.09 regulator for uxu operon b4325 yjiC 0.98 1.80 1.19 1.08 0.80 0.99 1.32 0.96 "orf, hypothetical protein" b4326 yjiD 1.42 0.96 1.04 1.00 1.10 1.19 1.05 "orf, hypothetical protein" b4327 yjiE 1.06 1.01 0.87 1.11 0.94 1.21 0.98 1.09 putative transcriptional regulator LYSR-type b4328 iadA 0.88 0.81 0.66 0.73 0.77 0.84 0.78 0.78 isoaspartyl dipeptidase b4329 yjiG 1.14 0.91 0.73 1.05 0.96 0.86 0.93 0.96 "orf, hypothetical protein" b4330 yjiH 1.17 1.23 0.76 0.98 0.86 1.02 1.05 0.95 "orf, hypothetical protein" b4331 yjiI 0.99 1.06 1.14 1.00 0.98 0.94 1.06 0.97 "orf, hypothetical protein" b4332 yjiJ 1.12 1.12 1.16 0.94 1.04 1.03 1.13 1.00 putative transport protein b4333 yjiK 0.96 1.04 1.18 1.06 1.04 0.85 1.06 0.98 "orf, hypothetical protein" b4334 yjiL 0.97 1.15 0.78 0.87 0.96 1.07 0.97 0.97 putative enzyme b4335 yjiM 1.29 0.96 0.97 1.08 1.08 1.06 1.07 1.07 "orf, hypothetical protein" b4336 yjiN 1.10 1.27 1.45 1.21 0.90 0.98 1.27 1.03 "orf, hypothetical protein" b4337 yjiO 0.98 1.14 0.89 0.89 1.14 1.03 1.00 1.02 putative transport protein b4338 yjiP 1.09 1.42 0.92 0.95 1.04 0.95 1.14 0.98 "orf, hypothetical protein" b4339 yjiQ 1.08 1.26 1.20 1.05 1.12 1.09 1.18 1.09 "orf, hypothetical protein" b4340 yjiR 0.96 1.06 0.94 1.02 0.94 1.05 0.99 1.00 putative regulator b4341 yjiS 1.03 1.08 0.92 0.96 0.92 1.02 1.01 0.97 "orf, hypothetical protein" b4342 yjiT 0.72 0.51 0.48 0.70 0.84 0.80 0.57 0.78 "orf, hypothetical protein" b4343 yjiU 1.10 1.23 1.47 0.84 0.96 1.27 0.90 "orf, hypothetical protein" b4344 mcrD 0.90 1.01 1.45 0.68 0.79 0.92 1.12 0.80 inhibits McrE 5-methylcytosine restriction system b4345 mcrC 0.97 0.93 0.81 0.89 0.80 0.95 0.83 "component of McrBC 5-methylcytosine restriction system, expands range of sequences restricted" b4346 mcrB 0.99 1.08 0.77 0.86 0.87 0.87 0.95 0.87 component of McrBC 5-methylcytosine restriction system b4347 yjiW 1.05 1.23 0.95 1.14 1.04 1.03 1.08 1.07 "orf, hypothetical protein" b4348 hsdS 0.84 1.17 0.93 0.95 1.09 1.06 0.98 1.03 specificity determinant for hsdM and hsdR b4349 hsdM 0.82 0.96 0.78 0.85 0.86 0.69 0.85 0.80 host modification; DNA methylase M b4350 hsdR 0.86 0.82 0.49 0.74 0.84 0.84 0.72 0.81 host restriction; endonuclease R b4351 mrr 0.97 1.19 0.87 0.95 1.09 1.09 1.01 1.04 restriction of methylated adenine b4352 yjiA 1.01 1.02 0.72 0.94 0.93 0.98 0.92 0.95 "orf, hypothetical protein" b4353 yjiX 1.17 1.14 0.73 1.04 1.02 0.92 1.01 0.99 "orf, hypothetical protein" b4354 yjiY 0.84 1.21 0.79 1.08 1.04 0.76 0.95 0.96 putative carbon starvation protein b4355 tsr 0.98 1.15 1.12 1.02 0.93 0.90 1.08 0.95 "methyl-accepting chemotaxis protein I, serine sensor receptor" b4356 yjiZ 1.27 1.26 1.61 0.94 0.89 0.97 1.38 0.93 "putative transport protein, cryptic, orf, joins former yjiZ and yjjL" b4357 yjjM 1.18 0.94 1.02 0.99 1.11 1.06 1.04 "orf, hypothetical protein" b4358 yjjN 1.03 0.70 0.55 1.00 0.92 0.99 0.76 0.97 putative oxidoreductase b4359 mdoB 0.89 0.77 1.04 0.95 0.77 0.92 0.90 0.88 phosphoglycerol transferase I b4360 yjjA 1.09 1.19 1.25 1.06 0.99 1.05 1.18 1.03 putative glycoprotein/receptor b4361 dnaC 1.11 1.30 1.02 1.00 0.92 1.08 1.14 1.00 chromosome replication; initiation and chain elongation b4362 dnaT 0.97 0.84 1.15 1.07 1.13 0.91 1.12 DNA biosynthesis; primosomal protein i b4363 yjjB 1.04 1.14 0.97 1.09 0.87 0.81 1.05 0.92 "orf, hypothetical protein" b4364 yjjP 1.32 1.11 0.98 1.21 0.99 1.62 1.14 1.27 putative structural protein b4365 yjjQ 0.91 1.52 0.97 1.02 0.98 0.94 1.13 0.98 putative regulator b4366 bglJ 0.94 0.97 0.47 0.95 0.84 1.03 0.79 0.94 2-component transcriptional regulator b4367 fhuF 1.05 1.06 0.37 0.65 1.09 0.91 0.83 0.88 "orf, hypothetical protein" b4371 yjjT 0.87 0.74 1.01 0.83 0.81 0.87 0.87 0.84 putative enzyme b4372 holD 0.85 0.94 1.05 0.95 1.19 0.92 0.95 1.02 "DNA polymerase III, psi subunit" b4373 rimI 0.96 0.97 0.98 0.86 0.99 0.90 0.97 0.92 acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine b4374 yjjG 1.00 1.03 0.91 0.98 0.97 0.95 0.98 0.97 putative phosphatase b4375 prfC 0.77 0.86 0.69 0.76 0.71 0.82 0.72 peptide chain release factor RF-3 b4376 osmY 1.17 1.35 0.80 2.01 1.46 2.04 1.11 1.84 hyperosmotically inducible periplasmic protein b4377 yjjU 2.74 3.29 4.17 1.28 1.20 1.23 3.40 1.24 "orf, hypothetical protein" b4378 yjjV 1.58 1.82 2.13 1.00 1.07 1.07 1.84 1.05 "orf, hypothetical protein" b4379 yjjW 1.08 1.57 1.41 1.11 1.04 1.14 1.35 1.10 putative activating enzyme b4380 yjjI 1.05 1.32 0.86 1.02 0.96 0.97 1.08 0.98 "orf, hypothetical protein" b4381 deoC 1.23 0.70 0.97 2-deoxyribose-5-phosphate aldolase b4382 deoA 1.20 1.30 0.85 1.04 1.10 1.04 1.12 1.06 thymidine phosphorylase b4383 deoB 1.13 1.23 0.78 1.29 1.06 1.02 1.05 1.12 phosphopentomutase b4384 deoD 1.05 1.05 0.61 1.02 1.14 1.04 0.90 1.07 purine-nucleoside phosphorylase b4385 yjjJ 1.15 0.94 0.85 1.09 0.92 1.10 0.98 1.04 "orf, hypothetical protein" b4386 lplA 0.98 1.11 0.83 1.04 0.93 1.06 0.97 1.01 lipoate-protein ligase A b4387 smp 1.04 0.92 0.75 1.14 0.92 0.93 0.90 1.00 "orf, hypothetical protein" b4388 serB 0.87 0.77 0.84 0.73 0.77 0.82 0.78 3-phosphoserine phosphatase b4389 sms 0.84 0.92 1.01 0.76 0.92 0.88 0.90 probable ATP-dependent protease b4390 nadR 0.98 1.03 1.02 1.05 0.90 0.98 1.01 0.98 probable nadAB transcriptional regulator b4391 yjjK 0.91 0.66 1.37 0.85 0.86 0.86 0.98 0.86 putative ATP-binding component of a transport system b4392 slt 1.17 0.90 1.03 1.33 1.09 1.26 1.03 1.23 soluble lytic murein transglycosylase b4393 trpR 0.99 1.09 1.35 0.91 1.14 1.14 1.14 1.06 regulator for trp operon and aroH; trp aporepressor b4394 yjjX 1.06 1.12 0.93 0.95 0.86 1.11 1.04 0.97 "orf, hypothetical protein" b4395 gpmB 1.00 1.03 1.12 0.85 0.94 1.02 1.05 0.94 phosphoglyceromutase 2 b4396 rob 1.13 1.00 0.96 1.23 2.05 1.10 1.03 1.46 right origin-binding protein b4397 creA 0.90 0.94 0.96 0.97 1.08 0.96 0.93 1.00 "orf, hypothetical protein" b4398 creB 1.16 1.16 0.78 1.05 0.90 1.12 1.03 1.02 catabolic regulation response regulator b4399 creC 1.13 1.09 0.97 1.03 1.16 1.33 1.06 1.17 catabolite repression sensor kinase for PhoB; alternative sensor for pho regulon b4400 creD 1.02 1.10 0.97 1.01 1.18 1.04 1.03 1.08 tolerance to colicin E2 b4401 arcA 2.01 2.06 3.45 1.58 1.51 2.19 2.51 1.76 "negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)" b4402 yjjY 2.08 2.38 3.70 1.36 1.62 1.42 2.72 1.47 "orf, hypothetical protein" b4403 lasT 1.06 1.06 1.43 0.97 0.98 0.96 1.18 0.97 "orf, hypothetical protein" b4404 yifM_1 1.06 0.96 1.02 1.01 "orf, conceptual translation in SwissProt is fused with b4405" b4405 yifM_2 0.99 1.20 1.00 0.92 1.12 1.10 1.01 "orf, conceptual translation in SwissProt is fused with b4404" * For this experiment dyes were reversed on a slide In all cases comparison was made for cells grown on NC minimal medium with glucose and ammonium (green) vs glucose and glutamine (red) Gene names and descriptions were taken from coli.berkeley.edu database